mRNA_P-lacustris_contig1222.1663.1 (mRNA) Pleurocladia lacustris SAG_25_93

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-lacustris_contig1222.1663.1
Unique NamemRNA_P-lacustris_contig1222.1663.1
TypemRNA
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig1222.1663.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig1222contigP-lacustris_contig1222:38592..39345 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size754
Cds size387
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig1222.1663.1prot_P-lacustris_contig1222.1663.1Pleurocladia lacustris SAG_25_93polypeptideP-lacustris_contig1222 38917..39303 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815541.0136707-UTR-P-lacustris_contig1222:38591..389161622815541.0136707-UTR-P-lacustris_contig1222:38591..38916Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1222 38592..38916 +
1693493599.1690967-UTR-P-lacustris_contig1222:38591..389161693493599.1690967-UTR-P-lacustris_contig1222:38591..38916Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1222 38592..38916 +
1622815541.0378034-UTR-P-lacustris_contig1222:39303..393451622815541.0378034-UTR-P-lacustris_contig1222:39303..39345Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1222 39304..39345 +
1693493599.1851635-UTR-P-lacustris_contig1222:39303..393451693493599.1851635-UTR-P-lacustris_contig1222:39303..39345Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1222 39304..39345 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815541.0262043-CDS-P-lacustris_contig1222:38916..393031622815541.0262043-CDS-P-lacustris_contig1222:38916..39303Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1222 38917..39303 +
1693493599.177418-CDS-P-lacustris_contig1222:38916..393031693493599.177418-CDS-P-lacustris_contig1222:38916..39303Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1222 38917..39303 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-lacustris_contig1222.1663.1

>prot_P-lacustris_contig1222.1663.1 ID=prot_P-lacustris_contig1222.1663.1|Name=mRNA_P-lacustris_contig1222.1663.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=129bp
MSLRMLAQSHVYYIRGGCVALLSELYIHVPAQSLLSIIYPPSSRKLQCTS
FSLVVLLPSRAIAKLVISRAANSSQSITRNKQRRLFSKRAGTHLFRVFRL
LTNGFPQHLSIISNPIRPSSPLVNSTKP*
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mRNA from alignment at P-lacustris_contig1222:38592..39345+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-lacustris_contig1222.1663.1 ID=mRNA_P-lacustris_contig1222.1663.1|Name=mRNA_P-lacustris_contig1222.1663.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=754bp|location=Sequence derived from alignment at P-lacustris_contig1222:38592..39345+ (Pleurocladia lacustris SAG_25_93)
GGGAGAAAAAGGCGAAGGTATGCATAGCAACAAGGAGAAGAGAGAGAAAA
AGCTGAGAGAAGCAAAGAAAGAAAATGCTACAACATGTCTTAAGGTTGAC
AGTGGCGCTGTGCACGTTACATAATATTCGTCATTATTCAACGAAAAGAA
AGACGCAAGTTGGAGGTCCACGATGCGGGAGGCAAATTAGCAATGGATTC
ATTCATATGTTTGGCAACGACCTTCTTTTCTTTATTCAACGAAAACACAA
CAGCTCCACCTCTATCTGTGGACAAGAGTCCAAAACGAAATAGCAATGAG
TTCATAGTGTGCGTGGGGCCAATTTATGTCTCTAAGGATGCTGGCACAAT
CACACGTTTACTACATACGGGGGGGGTGCGTGGCGCTTTTGTCAGAGCTG
TATATACATGTACCCGCCCAGTCTCTCCTTTCTATCATCTATCCGCCAAG
CTCCCGTAAACTGCAGTGCACCTCCTTTAGTCTAGTCGTGTTACTGCCCT
CGCGTGCGATTGCGAAGCTCGTTATCTCTCGCGCCGCCAACAGCAGTCAG
TCGATAACTCGCAACAAGCAACGACGCTTATTTTCAAAACGAGCAGGTAC
ACATTTGTTCCGAGTCTTTCGCTTGCTCACGAATGGGTTTCCACAGCATC
TCAGCATCATATCAAACCCAATCCGACCCTCCTCCCCGCTCGTCAATTCA
ACAAAACCCTAAAACGTTAGCCGAAAGCTCTTGGCCATCTGCCTGAACTT
CTCG
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Coding sequence (CDS) from alignment at P-lacustris_contig1222:38592..39345+

>mRNA_P-lacustris_contig1222.1663.1 ID=mRNA_P-lacustris_contig1222.1663.1|Name=mRNA_P-lacustris_contig1222.1663.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=774bp|location=Sequence derived from alignment at P-lacustris_contig1222:38592..39345+ (Pleurocladia lacustris SAG_25_93)
ATGTCTCTAAGGATGCTGGCACAATCACACGTTTACTACATACGGGGGGG
GTGCGTGGCGCTTTTGTCAGAGCTGTATATACATGTACCCGCCCAGTCTC
TCCTTTCTATCATCTATCCGCCAAGCTCCCGTAAACTGCAGTGCACCTCC
TTTAGTCTAGTCGTGTTACTGCCCTCGCGTGCGATTGCGAAGCTCGTTAT
CTCTCGCGCCGCCAACAGCAGTCAGTCGATAACTCGCAACAAGCAACGAC
GCTTATTTTCAAAACGAGCAGGTACACATTTGTTCCGAGTCTTTCGCTTG
CTCACGAATGGGTTTCCACAGCATCTCAGCATCATATCAAACCCAATCCG
ACCCTCCTCCCCGCTCGTCAATTCAACAAAACCCTAAATGTCTCTAAGGA
TGCTGGCACAATCACACGTTTACTACATACGGGGGGGGTGCGTGGCGCTT
TTGTCAGAGCTGTATATACATGTACCCGCCCAGTCTCTCCTTTCTATCAT
CTATCCGCCAAGCTCCCGTAAACTGCAGTGCACCTCCTTTAGTCTAGTCG
TGTTACTGCCCTCGCGTGCGATTGCGAAGCTCGTTATCTCTCGCGCCGCC
AACAGCAGTCAGTCGATAACTCGCAACAAGCAACGACGCTTATTTTCAAA
ACGAGCAGGTACACATTTGTTCCGAGTCTTTCGCTTGCTCACGAATGGGT
TTCCACAGCATCTCAGCATCATATCAAACCCAATCCGACCCTCCTCCCCG
CTCGTCAATTCAACAAAACCCTAA
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