mRNA_P-lacustris_contig99.16181.1 (mRNA) Pleurocladia lacustris SAG_25_93
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Overview
Homology
BLAST of mRNA_P-lacustris_contig99.16181.1 vs. uniprot
Match: D8LNR4_ECTSI (RanBP2-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LNR4_ECTSI) HSP 1 Score: 436 bits (1122), Expect = 4.890e-127 Identity = 325/586 (55.46%), Postives = 367/586 (62.63%), Query Frame = 3
Query: 1284 GANKKRDRLLRERREEAEKISRLQNARESRERSLKEEAFKDVLEDSXXXXXXXXHKPEETSAEQAGRPGDHRAPASVAAVAAMSESSGATPSGQDADQAGRVQQQSDRCG-CVINMLPPDLLLQCAEYLGDTRSLCRVREVCLGWMVALDGREAGKRLWRPLFYRLRASGSIHKATDATGQQNGQLKVYDLGNAATRTHRNGTPGASALRNGYVAGMSTPSPSQQ-RLSSEGPSSATAAGKRSLWSSERSVSGSSAVAMSSEVSFSCVVCGLIQREAYSGKDCEMCASALALVWGREPPSPATPRLAYTLVNLSGGAAGGXXXXXXGSCSS---PIQ---QQRQRCSVSG------PPLGHRKEGRENVGGI-PVDATRDGSVSEAERS--------GVAPDREEEVDEGGKERSVDWHFLVKRLAEEKRIAGVGVAAPRVVVAPARTPEHALAATWRRA------ARPLHRARPGLP*SRAAHSLWRFPRRWSTREGGTRPRRSSAATAAAAGKH----PTGEGRAGGDGEPDPRVTKLVRKLSSKKWVLLYDSLKATFTLQAEGIAREVVFEAMAAADAAAARD 2942
GANKKRDRLLRERREEAEK+SRLQ AR R+RSLKEEA KDVLEDS ++ E A +P + P S A+ SE++ A P+ + + +QQ G CVI++LPPDLLLQCAEYLGD RSLCRVREV LGW++ALD REAG RLWRPLFYRLRASGSIHKATDATGQQN QLKVYDLG TR G+ ASA NG AG+STPSPSQ+ RLSS GP A AAGK + WSS SGS+A A+ V+ SCVVCGLIQR+ YSGKDCEMCASAL LV GRE SPATPRLAYT VNLSGG GSCSS P QQ C V+G P L R++GR VGGI P AT DG+ EAERS G A EEE GG RSVDWHFLVKRLAEEKRIA + V R ++ L RR A L A P P + + TR G + P PT GRA DGEPDPR+ +LVRKLS+KKWV+LYDSLKATFTLQAEGIARE+V A +AA AAAR+
Sbjct: 143 GANKKRDRLLRERREEAEKLSRLQTARRCRDRSLKEEALKDVLEDSSDSENDDHNRRGEGPASHTTKPVEDETPVSTASA---SETTSAAPADDNTGRTKTLQQHPGTGGGCVISILPPDLLLQCAEYLGDARSLCRVREVGLGWLLALDDREAGSRLWRPLFYRLRASGSIHKATDATGQQNRQLKVYDLG---TRPPNRGSS-ASAFGNGLTAGVSTPSPSQKTRLSSGGPP-ALAAGKGTPWSSG---SGSAAAAV---VASSCVVCGLIQRDGYSGKDCEMCASALVLVRGRE--SPATPRLAYTRVNLSGGG---------GSCSSFSSPTTMRWQQHPGCLVTGAGSSRSPDL--RQKGR--VGGITPAGATADGA-REAERSIGSCNSSGGGAQGLEEEF--GGGARSVDWHFLVKRLAEEKRIANGWGSLQHGWVWLQRELQNML--RRRRGHEQLGPAPSLTAAVPTHPPPQVELAALSSASGVGTRGGASHPGAQQXXXXXXXXXXXXXTPTAAGRAAADGEPDPRIARLVRKLSTKKWVVLYDSLKATFTLQAEGIAREIVLAAASAAAVAAARE 694
BLAST of mRNA_P-lacustris_contig99.16181.1 vs. uniprot
Match: A0A835YZ22_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZ22_9STRA) HSP 1 Score: 100 bits (250), Expect = 3.870e-19 Identity = 99/337 (29.38%), Postives = 140/337 (41.54%), Query Frame = 2
Query: 3017 DGLRGCVAAWEAYKDWCEEVDMACELLNEQISAERYRTAGAGCGRGTTRPTFERPRC*ASGIPSP*TSSRSAPFCARQYPKACLPQKQASSRGGLRQKVGRNEPGSGPEQQNPQLDAAAASGDADE------LFTDLELMEDSRAIEFSVRSFSIERRVLATGXXXXXXXXXXXXXXXXXXXXXXXXXXXGGRALNVASSRSSRGSRPGNYYDWFLSKLEGKEAGIIRGDIDARGKSIVRLTASGETGAMGVGGAAGEGGVGLQTAT-----REELLEMVGDMIEELDVADDALSKDRQTQGAMRRLLLLPIKRWQAXXXXXXXXXXXXXDPRNLLL 3994
D LRG + AW+AY+DWCEEVD + + + A R F + + + + + GG ++ ++ GSG AA+GDA LFTDLEL+ED RA+ FSV+ RR +TG R L ++S + R R +YYDW L ++EG+ I+RG +DARG + GGV L +T R++LL + +EELDV DD LS DR TQG+MRR +LLP+ RW+A +P LL+
Sbjct: 5 DVLRGVLRAWDAYRDWCEEVDERPFIRDAALLAFRNN--------------FVMNVQVCAAVSAVAQHAAAXXXXXXXXXXXXXXXXXXRRMGGRKRACSASDGGSGD-----MGVGGAAAGDAGTNNEDSMLFTDLELVEDCRALNFSVQH---SRR--STGSE---------------------------RGLKTSTSTAERHHR--HYYDWILERVEGRAEDILRGTVDARGIA---------------------GGVKLALSTAAPESRQQLLSRLLSAVEELDVPDDDLSGDRHTQGSMRRAMLLPLLRWRAAMDECAANRNDNDEPSALLM 267 The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig99.16181.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-lacustris_contig99.16181.1 >prot_P-lacustris_contig99.16181.1 ID=prot_P-lacustris_contig99.16181.1|Name=mRNA_P-lacustris_contig99.16181.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=368bp MSESSGATPSGQDADQAGRVQQQSDRCGCVINMLPPDLLLQCAEYLGDTRback to top mRNA from alignment at P-lacustris_contig99:91737..106537+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-lacustris_contig99.16181.1 ID=mRNA_P-lacustris_contig99.16181.1|Name=mRNA_P-lacustris_contig99.16181.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=14801bp|location=Sequence derived from alignment at P-lacustris_contig99:91737..106537+ (Pleurocladia lacustris SAG_25_93)back to top Coding sequence (CDS) from alignment at P-lacustris_contig99:91737..106537+ >mRNA_P-lacustris_contig99.16181.1 ID=mRNA_P-lacustris_contig99.16181.1|Name=mRNA_P-lacustris_contig99.16181.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=2208bp|location=Sequence derived from alignment at P-lacustris_contig99:91737..106537+ (Pleurocladia lacustris SAG_25_93)back to top |