prot_P-lacustris_contig99.16181.1 (polypeptide) Pleurocladia lacustris SAG_25_93

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-lacustris_contig99.16181.1
Unique Nameprot_P-lacustris_contig99.16181.1
Typepolypeptide
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Sequence length368
Homology
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BLAST of mRNA_P-lacustris_contig99.16181.1 vs. uniprot
Match: D8LNR4_ECTSI (RanBP2-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LNR4_ECTSI)

HSP 1 Score: 313 bits (801), Expect = 3.650e-94
Identity = 216/349 (61.89%), Postives = 238/349 (68.19%), Query Frame = 0 
Query:    2 SESSGATPSGQDADQAGRVQQQSDRCG-CVINMLPPDLLLQCAEYLGDTRSLCRVREVCLGWMVALDGREAGKRLWRPLFYRLRASGSIHKATDATGQQNGQLKVYDLGNAATRTHRNGTPGASALRNGYVAGMSTPSPSQQ-RLSSEGPSSATAAGKRSLWSSERSVSGSSAVAMSSEVSFSCVVCGLIQREAYSGKDCEMCASALALVWGREPPSPATPRLAYTLVNLSGGAAGGXXXXXXGSCSS---PIQ---QQRQRCSVSG------PPLGHRKEGRENVGGI-PVDATRDGSVSEAERS--------GVAPDREEEVDEGGKERSVDWHFLVKRLAEEKRIA 327
            SE++ A P+  +  +   +QQ     G CVI++LPPDLLLQCAEYLGD RSLCRVREV LGW++ALD REAG RLWRPLFYRLRASGSIHKATDATGQQN QLKVYDLG   TR    G+  ASA  NG  AG+STPSPSQ+ RLSS GP  A AAGK + WSS    SGS+A A+   V+ SCVVCGLIQR+ YSGKDCEMCASAL LV GRE  SPATPRLAYT VNLSGG          GSCSS   P     QQ   C V+G      P L  R++GR  VGGI P  AT DG+  EAERS        G A   EEE   GG  RSVDWHFLVKRLAEEKRIA
Sbjct:  223 SETTSAAPADDNTGRTKTLQQHPGTGGGCVISILPPDLLLQCAEYLGDARSLCRVREVGLGWLLALDDREAGSRLWRPLFYRLRASGSIHKATDATGQQNRQLKVYDLG---TRPPNRGSS-ASAFGNGLTAGVSTPSPSQKTRLSSGGPP-ALAAGKGTPWSSG---SGSAAAAV---VASSCVVCGLIQRDGYSGKDCEMCASALVLVRGRE--SPATPRLAYTRVNLSGGG---------GSCSSFSSPTTMRWQQHPGCLVTGAGSSRSPDL--RQKGR--VGGITPAGATADGA-REAERSIGSCNSSGGGAQGLEEEF--GGGARSVDWHFLVKRLAEEKRIA 542
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig99.16181.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LNR4_ECTSI3.650e-9461.89RanBP2-type domain-containing protein n=2 Tax=Ecto... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D1.20.1280.50coord: 30..77
e-value: 2.2E-6
score: 29.5
IPR036047F-box-like domain superfamilySUPERFAMILY81383F-box domaincoord: 27..83

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig99contigP-lacustris_contig99:98743..102234 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig99.16181.1mRNA_P-lacustris_contig99.16181.1Pleurocladia lacustris SAG_25_93mRNAP-lacustris_contig99 91737..106537 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-lacustris_contig99.16181.1 ID=prot_P-lacustris_contig99.16181.1|Name=mRNA_P-lacustris_contig99.16181.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=368bp
MSESSGATPSGQDADQAGRVQQQSDRCGCVINMLPPDLLLQCAEYLGDTR
SLCRVREVCLGWMVALDGREAGKRLWRPLFYRLRASGSIHKATDATGQQN
GQLKVYDLGNAATRTHRNGTPGASALRNGYVAGMSTPSPSQQRLSSEGPS
SATAAGKRSLWSSERSVSGSSAVAMSSEVSFSCVVCGLIQREAYSGKDCE
MCASALALVWGREPPSPATPRLAYTLVNLSGGAAGGGSASASGSCSSPIQ
QQRQRCSVSGPPLGHRKEGRENVGGIPVDATRDGSVSEAERSGVAPDREE
EVDEGGKERSVDWHFLVKRLAEEKRIAGVGVAAPRVVVAPARTPEHALAA
TWRRAARPLHRARPGLP*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036047F-box-like_dom_sf