mRNA_P-lacustris_contig986.16159.1 (mRNA) Pleurocladia lacustris SAG_25_93

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-lacustris_contig986.16159.1
Unique NamemRNA_P-lacustris_contig986.16159.1
TypemRNA
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig986.16159.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig986contigP-lacustris_contig986:35445..36064 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size622
Cds size318
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817416.9622386-CDS-P-lacustris_contig986:35444..357621622817416.9622386-CDS-P-lacustris_contig986:35444..35762Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig986 35445..35762 +
1693495052.0730617-CDS-P-lacustris_contig986:35444..357621693495052.0730617-CDS-P-lacustris_contig986:35444..35762Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig986 35445..35762 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817416.9734788-UTR-P-lacustris_contig986:35762..360641622817416.9734788-UTR-P-lacustris_contig986:35762..36064Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig986 35763..36064 +
1693495052.090367-UTR-P-lacustris_contig986:35762..360641693495052.090367-UTR-P-lacustris_contig986:35762..36064Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig986 35763..36064 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig986.16159.1prot_P-lacustris_contig986.16159.1Pleurocladia lacustris SAG_25_93polypeptideP-lacustris_contig986 35445..35762 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-lacustris_contig986.16159.1

>prot_P-lacustris_contig986.16159.1 ID=prot_P-lacustris_contig986.16159.1|Name=mRNA_P-lacustris_contig986.16159.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=106bp
SSKHILLFLLFKSFQGGFGAYEHTYLLSLRGCRLLVFDKTRTNYSSKHAV
VVNKVSPAAVDLANSIERPSTERTQVPRRQNAAVDLTNSIERPRQRGHNS
SGGST*
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mRNA from alignment at P-lacustris_contig986:35445..36064+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-lacustris_contig986.16159.1 ID=mRNA_P-lacustris_contig986.16159.1|Name=mRNA_P-lacustris_contig986.16159.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=620bp|location=Sequence derived from alignment at P-lacustris_contig986:35445..36064+ (Pleurocladia lacustris SAG_25_93)
AGCTCGAAACACATACTGCTGTTCTTGTTGTTCAAGTCTTTTCAAGGGGG
TTTTGGTGCGTACGAACATACATATCTCCTGAGCCTACGGGGTTGTAGAC
TACTGGTTTTCGATAAAACACGAACAAACTACAGTAGTAAACATGCCGTG
GTCGTCAATAAGGTTTCTCCTGCCGCTGTAGATCTAGCAAACTCCATCGA
ACGTCCTTCGACAGAGAGGACACAAGTGCCGCGTCGTCAAAATGCCGCTG
TAGATCTAACAAACTCCATCGAACGTCCTCGACAGCGAGGACACAACAGC
AGCGGTGGATCTACGTAGGTGAATTACCGTTATTTACAACCTGCTGCAGC
AGTTGTTCTAGAGAGCCGGAAAATGCTCTGTGAGGGTTATGGTTATGGTT
ATGCTACACTTACACCGGCGCCTACGTGCTCCATCATCATCAGCAAAGTG
TAGCAGTTGGGTTCTCACATATTCGCAATACTGACTACTACTACTGTCAG
CAATGCCGTCCTTCTTCAACCCATGTGGACAACGAGAGATTTCTCAAAAT
ACTCCGTACGAACTGCACACCAAAGCTCATACAAAACCTTTCAGCAACTC
GAGTGGCAGGTACAGCGAGG
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Coding sequence (CDS) from alignment at P-lacustris_contig986:35445..36064+

>mRNA_P-lacustris_contig986.16159.1 ID=mRNA_P-lacustris_contig986.16159.1|Name=mRNA_P-lacustris_contig986.16159.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=636bp|location=Sequence derived from alignment at P-lacustris_contig986:35445..36064+ (Pleurocladia lacustris SAG_25_93)
AGCTCGAAACACATACTGCTGTTCTTGTTGTTCAAGTCTTTTCAAGGGGG
TTTTGGTGCGTACGAACATACATATCTCCTGAGCCTACGGGGTTGTAGAC
TACTGGTTTTCGATAAAACACGAACAAACTACAGTAGTAAACATGCCGTG
GTCGTCAATAAGGTTTCTCCTGCCGCTGTAGATCTAGCAAACTCCATCGA
ACGTCCTTCGACAGAGAGGACACAAGTGCCGCGTCGTCAAAATGCCGCTG
TAGATCTAACAAACTCCATCGAACGTCCTCGACAGCGAGGACACAACAGC
AGCGGTGGATCTACGTAGAGCTCGAAACACATACTGCTGTTCTTGTTGTT
CAAGTCTTTTCAAGGGGGTTTTGGTGCGTACGAACATACATATCTCCTGA
GCCTACGGGGTTGTAGACTACTGGTTTTCGATAAAACACGAACAAACTAC
AGTAGTAAACATGCCGTGGTCGTCAATAAGGTTTCTCCTGCCGCTGTAGA
TCTAGCAAACTCCATCGAACGTCCTTCGACAGAGAGGACACAAGTGCCGC
GTCGTCAAAATGCCGCTGTAGATCTAACAAACTCCATCGAACGTCCTCGA
CAGCGAGGACACAACAGCAGCGGTGGATCTACGTAG
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