mRNA_P-lacustris_contig977.16082.1 (mRNA) Pleurocladia lacustris SAG_25_93

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-lacustris_contig977.16082.1
Unique NamemRNA_P-lacustris_contig977.16082.1
TypemRNA
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Homology
BLAST of mRNA_P-lacustris_contig977.16082.1 vs. uniprot
Match: D7FNM0_ECTSI (Tetrahydrofolate synthase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNM0_ECTSI)

HSP 1 Score: 145 bits (367), Expect = 1.280e-38
Identity = 76/90 (84.44%), Postives = 84/90 (93.33%), Query Frame = 1
Query:    7 VDGAGGDAPGLRTFEEAKSTLYGTISS-GAALASASRRRKSTVTNVAAYLDRIQLDITGLSVIHVAGTKGKGSTCAMVESVLRHHGFRTG 273
            V GAGGDA GLRTFE+AKSTLYGTIS+ GAAL  AS+RR+STVT+VAAYLDRIQLD++GLSVIHV GTKGKGSTCAMVES+LRHHGFRTG
Sbjct:    4 VHGAGGDATGLRTFEDAKSTLYGTISAAGAALEKASKRRESTVTSVAAYLDRIQLDLSGLSVIHVTGTKGKGSTCAMVESILRHHGFRTG 93          
BLAST of mRNA_P-lacustris_contig977.16082.1 vs. uniprot
Match: A0A835ZAG6_9STRA (Tetrahydrofolate synthase (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAG6_9STRA)

HSP 1 Score: 77.0 bits (188), Expect = 1.940e-14
Identity = 42/79 (53.16%), Postives = 54/79 (68.35%), Query Frame = 1
Query:   43 TFEEAKSTLYGTISSGAALASASRRRKSTVTNVAAYLD--RIQLDITGLSVIHVAGTKGKGSTCAMVESVLRHHGFRTG 273
            TF  A   +   IS+GAAL +A+ +RK TV  +  YL   R+ LDI+GL V+HV GTKGKGSTC  VES+L+H+G  TG
Sbjct:   10 TFTAAVDIVNNAISTGAALEAAAAQRKQTVEAMHHYLGPTRLNLDISGLKVVHVTGTKGKGSTCCFVESILQHYGVATG 88          
BLAST of mRNA_P-lacustris_contig977.16082.1 vs. uniprot
Match: A0A7R9YD74_9STRA (Hypothetical protein (Fragment) n=2 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YD74_9STRA)

HSP 1 Score: 73.9 bits (180), Expect = 1.980e-14
Identity = 41/85 (48.24%), Postives = 54/85 (63.53%), Query Frame = 1
Query:   46 FEEAKSTLYGTISSGAALASASRRRKSTVTNVAAYLDRIQLDITGLSVIHVAGTKGKGSTCAMVESVLR-HHGFRTGTASHARFV 297
            FE   S LYG  S GAAL ++S  RK+TV  +  Y +R   D  GL ++H+AGTKGKGS CA++E++LR H G +TG  S    V
Sbjct:   26 FESTISHLYGLQSRGAALQASSANRKATVEVMRQYAERAGTDFGGLKILHIAGTKGKGSCCALLEALLRAHFGLKTGFFSSPHLV 110          
BLAST of mRNA_P-lacustris_contig977.16082.1 vs. uniprot
Match: A0A5B7EBU6_PORTR (Tetrahydrofolate synthase n=3 Tax=Portunidae TaxID=6757 RepID=A0A5B7EBU6_PORTR)

HSP 1 Score: 73.2 bits (178), Expect = 5.530e-13
Identity = 44/90 (48.89%), Postives = 57/90 (63.33%), Query Frame = 1
Query:   46 FEEAKSTLYGTISSGAALASASRRRKSTVTNVAA---YLDRIQL---DITGLSVIHVAGTKGKGSTCAMVESVLRHHGFRTGTASHARFV 297
            +EEA  TL  ++ S AA+    R+ +    NV A   +LDR+ +   D+  LSVIH+AGTKGKGSTC+ VES+LR HGFRTG  S    V
Sbjct:   48 YEEAVQTLN-SLQSNAAVLQRIRQERGFTNNVQATEGFLDRVGISLKDLDSLSVIHIAGTKGKGSTCSFVESILREHGFRTGFYSSPHLV 136          
BLAST of mRNA_P-lacustris_contig977.16082.1 vs. uniprot
Match: UPI000D73548E (folylpolyglutamate synthase, mitochondrial-like n=1 Tax=Pomacea canaliculata TaxID=400727 RepID=UPI000D73548E)

HSP 1 Score: 71.6 bits (174), Expect = 1.900e-12
Identity = 37/63 (58.73%), Postives = 44/63 (69.84%), Query Frame = 1
Query:  118 RKSTVTNVAAYLDRIQL---DITGLSVIHVAGTKGKGSTCAMVESVLRHHGFRTGTASHARFV 297
            +K+ V+ V  +L R+ L   DI  LSVIHVAGTKGKGSTCA  ES+LRHHGF+TG  S    V
Sbjct:   31 KKAKVSRVVNFLQRVGLSVDDIDNLSVIHVAGTKGKGSTCAYAESILRHHGFKTGFYSSPHLV 93          
BLAST of mRNA_P-lacustris_contig977.16082.1 vs. uniprot
Match: A0A2T7NKT5_POMCA (Uncharacterized protein n=2 Tax=Pomacea canaliculata TaxID=400727 RepID=A0A2T7NKT5_POMCA)

HSP 1 Score: 71.6 bits (174), Expect = 1.980e-12
Identity = 37/63 (58.73%), Postives = 44/63 (69.84%), Query Frame = 1
Query:  118 RKSTVTNVAAYLDRIQL---DITGLSVIHVAGTKGKGSTCAMVESVLRHHGFRTGTASHARFV 297
            +K+ V+ V  +L R+ L   DI  LSVIHVAGTKGKGSTCA  ES+LRHHGF+TG  S    V
Sbjct:   18 KKAKVSRVVNFLQRVGLSVDDIDNLSVIHVAGTKGKGSTCAYAESILRHHGFKTGFYSSPHLV 80          
BLAST of mRNA_P-lacustris_contig977.16082.1 vs. uniprot
Match: A0A6G0XFF3_9STRA (Tetrahydrofolate synthase n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XFF3_9STRA)

HSP 1 Score: 71.2 bits (173), Expect = 2.570e-12
Identity = 37/78 (47.44%), Postives = 50/78 (64.10%), Query Frame = 1
Query:   40 RTFEEAKSTLYGTISSGAALASASRRRKSTVTNVAAYLDRIQLDITGLSVIHVAGTKGKGSTCAMVESVLRHHGFRTG 273
            R  + A   L G     A +   S  R+  +  + +YL R+++DI+GLS+IHVAGTKGKGSTCA  ES+LR HG +TG
Sbjct:   22 RGIDGAMDILLGMPGRPAYVGKTSDSREVAIEMMVSYLKRLRMDISGLSIIHVAGTKGKGSTCAFTESILRAHGAKTG 99          
BLAST of mRNA_P-lacustris_contig977.16082.1 vs. uniprot
Match: A0A813C1F6_9DINO (Tetrahydrofolate synthase n=3 Tax=Sar TaxID=2698737 RepID=A0A813C1F6_9DINO)

HSP 1 Score: 70.9 bits (172), Expect = 3.610e-12
Identity = 40/82 (48.78%), Postives = 56/82 (68.29%), Query Frame = 1
Query:   40 RTFEEAKSTLYGTISSGAALASASRRRKSTVTNVAAYLDRIQL--DITGLSVIHVAGTKGKGSTCAMVESVLRHHGFRTGTA 279
            R++  A+  L+ +ISSGAAL +A++RR   V  +  Y+ R+ L  D+  L V+H+AGTKGKGST  MVE++LR  G RTG A
Sbjct:    8 RSYSAAERALWSSISSGAALDAAAKRRGRVVELMLVYIRRMGLVDDLLRLPVVHIAGTKGKGSTACMVEAMLRSAGLRTGEA 89          
BLAST of mRNA_P-lacustris_contig977.16082.1 vs. uniprot
Match: A0A7S4NQ94_GUITH (Tetrahydrofolate synthase (Fragment) n=1 Tax=Guillardia theta TaxID=55529 RepID=A0A7S4NQ94_GUITH)

HSP 1 Score: 69.7 bits (169), Expect = 3.980e-12
Identity = 34/54 (62.96%), Postives = 42/54 (77.78%), Query Frame = 1
Query:  112 RRRKSTVTNVAAYLDRIQLDITGLSVIHVAGTKGKGSTCAMVESVLRHHGFRTG 273
            R R   V     +L+++QLDI+ LSVIHVAGTKGKGSTC+MVES+LR  G+RTG
Sbjct:  101 RLRTDAVEATREHLEQLQLDISRLSVIHVAGTKGKGSTCSMVESILRSKGYRTG 154          
BLAST of mRNA_P-lacustris_contig977.16082.1 vs. uniprot
Match: A0A815YXK3_ADIRI (Tetrahydrofolate synthase n=2 Tax=Protostomia TaxID=33317 RepID=A0A815YXK3_ADIRI)

HSP 1 Score: 70.5 bits (171), Expect = 5.110e-12
Identity = 43/90 (47.78%), Postives = 60/90 (66.67%), Query Frame = 1
Query:   37 LRTFEEAKSTLYGTISSGAALASASRRRKSTVTNVAAYLD--RIQLD-ITGLSVIHVAGTKGKGSTCAMVESVLRHHGFRTGTASHARFV 297
            L  +EEA STL  ++ +  ++ +A++R   ++T+V  YL    IQLD I  L+VIHVAGTKGKGSTCA  ES+LR +G+RTG  S    +
Sbjct:  163 LSQYEEAISTLN-SLQTNQSVVAANKRAGKSMTDVLRYLSCLNIQLDQIDRLNVIHVAGTKGKGSTCAFTESILRQYGYRTGFYSSPHLI 251          
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig977.16082.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FNM0_ECTSI1.280e-3884.44Tetrahydrofolate synthase n=1 Tax=Ectocarpus silic... [more]
A0A835ZAG6_9STRA1.940e-1453.16Tetrahydrofolate synthase (Fragment) n=1 Tax=Tribo... [more]
A0A7R9YD74_9STRA1.980e-1448.24Hypothetical protein (Fragment) n=2 Tax=Pinguiococ... [more]
A0A5B7EBU6_PORTR5.530e-1348.89Tetrahydrofolate synthase n=3 Tax=Portunidae TaxID... [more]
UPI000D73548E1.900e-1258.73folylpolyglutamate synthase, mitochondrial-like n=... [more]
A0A2T7NKT5_POMCA1.980e-1258.73Uncharacterized protein n=2 Tax=Pomacea canalicula... [more]
A0A6G0XFF3_9STRA2.570e-1247.44Tetrahydrofolate synthase n=1 Tax=Aphanomyces eute... [more]
A0A813C1F6_9DINO3.610e-1248.78Tetrahydrofolate synthase n=3 Tax=Sar TaxID=269873... [more]
A0A7S4NQ94_GUITH3.980e-1262.96Tetrahydrofolate synthase (Fragment) n=1 Tax=Guill... [more]
A0A815YXK3_ADIRI5.110e-1247.78Tetrahydrofolate synthase n=2 Tax=Protostomia TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig977contigP-lacustris_contig977:27155..28092 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score146.0
Seed ortholog evalue9.6e-33
Seed eggNOG ortholog2880.D7FNM0
Preferred nameFPGS
KEGG rclassRC00064,RC00090,RC00162
KEGG koko:K01930
KEGG ReactionR00942,R02237,R04241
KEGG Pathwayko00790,ko01100,ko01523,map00790,map01100,map01523
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0004326,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006575,GO:0006725,GO:0006732,GO:0006760,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009108,GO:0009396,GO:0009987,GO:0016053,GO:0016874,GO:0016879,GO:0016881,GO:0018130,GO:0019438,GO:0019752,GO:0034641,GO:0042398,GO:0042558,GO:0042559,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046394,GO:0046483,GO:0046900,GO:0046901,GO:0051186,GO:0051188,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576
EggNOG free text desc.tetrahydrofolylpolyglutamate synthase activity
EggNOG OGsCOG0285@1,KOG2525@2759
EC6.3.2.17
COG Functional cat.H
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Exons3
Model size300
Cds size300
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig977.16082.1prot_P-lacustris_contig977.16082.1Pleurocladia lacustris SAG_25_93polypeptideP-lacustris_contig977 27155..28092 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817407.4986284-CDS-P-lacustris_contig977:27154..272891622817407.4986284-CDS-P-lacustris_contig977:27154..27289Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig977 27155..27289 -
1693495044.4156752-CDS-P-lacustris_contig977:27154..272891693495044.4156752-CDS-P-lacustris_contig977:27154..27289Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig977 27155..27289 -
1622817407.511831-CDS-P-lacustris_contig977:27542..275941622817407.511831-CDS-P-lacustris_contig977:27542..27594Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig977 27543..27594 -
1693495044.431308-CDS-P-lacustris_contig977:27542..275941693495044.431308-CDS-P-lacustris_contig977:27542..27594Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig977 27543..27594 -
1622817407.526304-CDS-P-lacustris_contig977:27979..280921622817407.526304-CDS-P-lacustris_contig977:27979..28092Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig977 27980..28092 -
1693495044.4483426-CDS-P-lacustris_contig977:27979..280921693495044.4483426-CDS-P-lacustris_contig977:27979..28092Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig977 27980..28092 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-lacustris_contig977.16082.1

>prot_P-lacustris_contig977.16082.1 ID=prot_P-lacustris_contig977.16082.1|Name=mRNA_P-lacustris_contig977.16082.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=100bp
MEVDGAGGDAPGLRTFEEAKSTLYGTISSGAALASASRRRKSTVTNVAAY
LDRIQLDITGLSVIHVAGTKGKGSTCAMVESVLRHHGFRTGTASHARFV*
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mRNA from alignment at P-lacustris_contig977:27155..28092-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-lacustris_contig977.16082.1 ID=mRNA_P-lacustris_contig977.16082.1|Name=mRNA_P-lacustris_contig977.16082.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=938bp|location=Sequence derived from alignment at P-lacustris_contig977:27155..28092- (Pleurocladia lacustris SAG_25_93)
ATGGAGGTGGATGGCGCGGGTGGTGATGCTCCTGGCTTGCGAACCTTCGA GGAAGCCAAGTCGACGCTCTATGGAACCATCTCGTCAGGCGCAGCACTGG CAAGCGCGTCCAGGTGTGTTCGCATTGAATTCCGATCACGCTCGGAAAAG AAGATAATGTTTTGAAGCAGTCGTCCAGCTGGTATCTCGCTGAGGAGTGT TTGTAGGGATCAAGGGACGGCTCGATCAGAATACAGCAGTTTAGTAGCTC TCATGAGTGTGTGAGCTGCCGGACGTGTGCTGCAGCTGGTTGAAGCTGCA GGGGGGCAGCAGTAATGATGTGCGGATTGGGTTCATCAGAGACTCTGTCC GTCGTTGATCCAGCTACATCTAAATCCGCGCACGCACTGCAACTTCGAAG CCCAGCTAGCTACACAATGCCAACCTTCGGTTGATGAAGGTGATGACAGC TGTCTGTGCATTCCGCCGTCGTCGCTCCTAACTCCCCCCCTACAACAGAC GAAGAAAGTCCACGGTGACCAACGTCGCAGCCTACCTCGACAGAATCCAG GTGAAGACTACAGGGTCGTCACTAGCCAAGTTTAACGCAACTTCAGCTTT TGGCCTCCAATGTCTAACAGCCGCCCATTGCCCTCTGACTCCGTGGTAGC CACCGAACTGCAAAACGTTGAACCTGTCTTGTGCGGGGAACTTCTTCACA ATAAACACGGCAGCAGTTTGAGGATTTCACGCATGTAACTTGGGCGCCGT GCGTTGCTTTCGATTTCGGTTGCCCCACCGTTGCACTGCGTTGTGTGGGA CAGCTAGACATAACCGGTCTATCGGTGATCCATGTGGCGGGTACCAAGGG CAAGGGCAGCACGTGCGCGATGGTCGAGTCCGTCCTTCGTCACCATGGCT TCAGAACAGGCACGGCTAGCCATGCCCGCTTCGTGTGA
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Coding sequence (CDS) from alignment at P-lacustris_contig977:27155..28092-

>mRNA_P-lacustris_contig977.16082.1 ID=mRNA_P-lacustris_contig977.16082.1|Name=mRNA_P-lacustris_contig977.16082.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=600bp|location=Sequence derived from alignment at P-lacustris_contig977:27155..28092- (Pleurocladia lacustris SAG_25_93)
ATGGAGGTGGATGGCGCGGGTGGTGATGCTCCTGGCTTGCGAACCTTCGA
GGAAGCCAAGTCGACGCTCTATGGAACCATCTCGTCAGGCGCAGCACTGG
CAAGCGCGTCCAGATGGAGGTGGATGGCGCGGGTGGTGATGCTCCTGGCT
TGCGAACCTTCGAGGAAGCCAAGTCGACGCTCTATGGAACCATCTCGTCA
GGCGCAGCACTGGCAAGCGCGTCCAGACGAAGAAAGTCCACGGTGACCAA
CGTCGCAGCCTACCTCGACAGAATCCAGACGAAGAAAGTCCACGGTGACC
AACGTCGCAGCCTACCTCGACAGAATCCAGCTAGACATAACCGGTCTATC
GGTGATCCATGTGGCGGGTACCAAGGGCAAGGGCAGCACGTGCGCGATGG
TCGAGTCCGTCCTTCGTCACCATGGCTTCAGAACAGGCACGGCTAGCCAT
GCCCGCTTCGTGTGACTAGACATAACCGGTCTATCGGTGATCCATGTGGC
GGGTACCAAGGGCAAGGGCAGCACGTGCGCGATGGTCGAGTCCGTCCTTC
GTCACCATGGCTTCAGAACAGGCACGGCTAGCCATGCCCGCTTCGTGTGA
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