mRNA_P-lacustris_contig12.1482.1 (mRNA) Pleurocladia lacustris SAG_25_93

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-lacustris_contig12.1482.1
Unique NamemRNA_P-lacustris_contig12.1482.1
TypemRNA
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Homology
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BLAST of mRNA_P-lacustris_contig12.1482.1 vs. uniprot
Match: A0A6H5KJI1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJI1_9PHAE)

HSP 1 Score: 119 bits (299), Expect = 6.660e-29
Identity = 80/147 (54.42%), Postives = 96/147 (65.31%), Query Frame = 3 
Query:  162 QRNNKNT-VSPCDPENGN----GYLCMG--LGFLPSKEAVASKGLEAKVDMATHGHDSWALTNLGAWRNKSLSTSSEGKSAEFVKSRQREARRAMLGAAPEGGAARKDKD--APDEQSVGAGVGCRPVPAVVPAKPPGEGGCSDMAV 575
            QR+++   +SP D + G+    G + +G  LG LPSKEA+ASKGLEAKVDMAT+GH SWALTNLGAWR++SL  S  GK A+FVKSRQREA+RAMLG A             AP   +V      RPV  VVPAKPP E G S M +
Sbjct:    7 QRHHRGCGLSPGDLKTGDDSIDGSVGLGNWLGSLPSKEAMASKGLEAKVDMATYGHQSWALTNLGAWRSQSLGASGGGKPADFVKSRQREAKRAMLGTAAXXXXXXXTGPGAAPTNATVVEEGADRPVLMVVPAKPPEEMGRSAMVI 153
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig12.1482.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KJI1_9PHAE6.660e-2954.42Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig12contigP-lacustris_contig12:8073..9925 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-06_010470.1
Exons2
Model size1193
Cds size504
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig12.1482.1prot_P-lacustris_contig12.1482.1Pleurocladia lacustris SAG_25_93polypeptideP-lacustris_contig12 8150..9313 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815511.960468-UTR-P-lacustris_contig12:8072..81491622815511.960468-UTR-P-lacustris_contig12:8072..8149Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig12 8073..8149 +
1693493582.2266128-UTR-P-lacustris_contig12:8072..81491693493582.2266128-UTR-P-lacustris_contig12:8072..8149Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig12 8073..8149 +
1622815511.995181-UTR-P-lacustris_contig12:9313..99251622815511.995181-UTR-P-lacustris_contig12:9313..9925Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig12 9314..9925 +
1693493582.268778-UTR-P-lacustris_contig12:9313..99251693493582.268778-UTR-P-lacustris_contig12:9313..9925Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig12 9314..9925 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815511.972151-CDS-P-lacustris_contig12:8149..83561622815511.972151-CDS-P-lacustris_contig12:8149..8356Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig12 8150..8356 +
1693493582.2375784-CDS-P-lacustris_contig12:8149..83561693493582.2375784-CDS-P-lacustris_contig12:8149..8356Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig12 8150..8356 +
1622815511.9841306-CDS-P-lacustris_contig12:9016..93131622815511.9841306-CDS-P-lacustris_contig12:9016..9313Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig12 9017..9313 +
1693493582.2548735-CDS-P-lacustris_contig12:9016..93131693493582.2548735-CDS-P-lacustris_contig12:9016..9313Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig12 9017..9313 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-lacustris_contig12.1482.1

>prot_P-lacustris_contig12.1482.1 ID=prot_P-lacustris_contig12.1482.1|Name=mRNA_P-lacustris_contig12.1482.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=168bp
MPRFYATSLVAAVPCCTCRVRLTLLGFHQRNNKNTVSPCDPENGNGYLCM
GLGFLPSKEAVASKGLEAKVDMATHGHDSWALTNLGAWRNKSLSTSSEGK
SAEFVKSRQREARRAMLGAAPEGGAARKDKDAPDEQSVGAGVGCRPVPAV
VPAKPPGEGGCSDMAVG*
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mRNA from alignment at P-lacustris_contig12:8073..9925+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-lacustris_contig12.1482.1 ID=mRNA_P-lacustris_contig12.1482.1|Name=mRNA_P-lacustris_contig12.1482.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=1853bp|location=Sequence derived from alignment at P-lacustris_contig12:8073..9925+ (Pleurocladia lacustris SAG_25_93)
AGGTGATACAAAGCTCTTGCTTCCCACCATTAGGGTGGGGGTGGCATAGG
GTGGTTCAGCGCACGGCCACGAAATCGATGCCCCGGTTTTACGCCACCTC
CCTCGTTGCTGCTGTGCCTTGTTGCACCTGCCGGGTGCGCCTTACGCTAC
TCGGTTTTCATCAGAGAAATAACAAGAATACGGTAAGCCCTTGCGATCCG
GAGAACGGAAATGGATACTTATGCATGGGTCTTGGATTTCTCCCGTCAAA
GGAGGCCGTGGCATCGAAGGGCCTCGAGGCAAAGGTGACATTAGCAAAGG
ACCTCCCCAGCCAATGGCCCTTACTCTGGCAATAGTACAAAAATTGCGTA
CGATTGGGTGTGTGCAGTCATTAGATGACGGGTAGACATCGCTCTTGACG
ATTTCAGGAATGAACGATTGTTGCCCATCGCGCACAACTTACACCGATAT
TGCTGAGTGGAGTGAAATTGTAACATTGACGAGACGAGTCCGGTTTTTGT
CAGGCGAAACCGAGGAACGTTACAAGTAGTACGAAATGCGGGGGATTAGT
TGAGAGCGGAGAGAGAGCAGAATGATTGGCTTCGGTTTCTTTACATGGAA
ACAACTGCTAGATTGAAGTAGCAATGGCAGTTGGACCGCCGTACCTATGT
GGTCGGGATGGCGTTGTCCATCTATTGCGGCTTGTTTAGTCCATCAAACC
TTGACCCCGTTCTCGTTAGCCGGCTCATACATTCACGCTAGGCTCTCTGC
CTCTCTGAAACGTCGCTCAGAGCCGCCGGGGGCCACGCGGAGAGATTTTT
CCGGAGAAGTGAGTAGTTTACATTCGAAACAGAACCTTGACCGAGTGCTC
ACCCACCCAAGAGGCTGAAACCGTCGGCTCGACAGTCTCCAGCACTGCAT
TTGCTGGGACCTTGCTGTTTTTTTTTCTGTTTTCAAACGTGAAGGTGGAC
ATGGCTACACACGGACACGACTCTTGGGCGCTGACTAACCTCGGTGCGTG
GCGAAATAAATCGTTGAGCACATCAAGCGAAGGGAAATCAGCCGAGTTTG
TCAAGAGCAGACAGCGCGAGGCTAGAAGGGCGATGTTGGGAGCTGCTCCT
GAGGGTGGTGCAGCAAGAAAAGATAAAGATGCTCCAGATGAGCAGTCAGT
TGGGGCTGGGGTTGGTTGTCGCCCTGTACCAGCGGTCGTCCCTGCGAAGC
CACCAGGAGAGGGGGGCTGCAGTGACATGGCAGTGGGGTGAAGACATTAA
ATTGACGGGATATATCTGGCTGCAATAGTGTAATGATTCAGAGCGGCAGC
AGCTTATTTTGAATAGTATGTTTTATTATGGAAAGAGTACAATGTGCCTC
AATTTGTATATATTTAAAAAACTTTTGTTCCAGCCGCACAGCGTAGAGAC
TCCCCTACATATAACACGCCAAATAGGCGGCTGGCGTCATTTTAGCCGTC
ATTGTGAAGACTTGGACGTGAACCACCTGCAAGGGACTTCTCAGATGACA
GTCTTCCTTTGATGTGTTGTCTTTCTTCTTGAAACACGGTGGAGAAGAGC
GGGAGGAGATGGCAGCATCCGGGATAAAGACATGGGTAACACGCTCTGGT
GGTGTTGCATCTCGTGAGGTCGGCTTCTTCGTGATTCTAAATGACCAAGA
TGCTCTTTTATCGTTCTGGCTCGGGAAAACACGTGACTGGGCGGTTACTA
TCTTGGAACTTTCCAGTGCCATGTCTCCTGTCTTGGAGGCAGCCTTCACT
CCATAGGAAGCGTAGCCGTGTGGAGGGAGCCGGCAGTAAAGTTTATGCGG
GGTAAGGAATAACATCTTCCGGCCGAATGGGCGTCGTCGTTGATGTCTCT
CAC
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Coding sequence (CDS) from alignment at P-lacustris_contig12:8073..9925+

>mRNA_P-lacustris_contig12.1482.1 ID=mRNA_P-lacustris_contig12.1482.1|Name=mRNA_P-lacustris_contig12.1482.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=1008bp|location=Sequence derived from alignment at P-lacustris_contig12:8073..9925+ (Pleurocladia lacustris SAG_25_93)
ATGCCCCGGTTTTACGCCACCTCCCTCGTTGCTGCTGTGCCTTGTTGCAC
CTGCCGGGTGCGCCTTACGCTACTCGGTTTTCATCAGAGAAATAACAAGA
ATACGGTAAGCCCTTGCGATCCGGAGAACGGAAATGGATACTTATGCATG
GGTCTTGGATTTCTCCCGTCAAAGGAGGCCGTGGCATCGAAGGGCCTCGA
GGCAAAGATGCCCCGGTTTTACGCCACCTCCCTCGTTGCTGCTGTGCCTT
GTTGCACCTGCCGGGTGCGCCTTACGCTACTCGGTTTTCATCAGAGAAAT
AACAAGAATACGGTAAGCCCTTGCGATCCGGAGAACGGAAATGGATACTT
ATGCATGGGTCTTGGATTTCTCCCGTCAAAGGAGGCCGTGGCATCGAAGG
GCCTCGAGGCAAAGGTGGACATGGCTACACACGGACACGACTCTTGGGCG
CTGACTAACCTCGGTGCGTGGCGAAATAAATCGTTGAGCACATCAAGCGA
AGGGAAATCAGCCGAGTTTGTCAAGAGCAGACAGCGCGAGGCTAGAAGGG
CGATGTTGGGAGCTGCTCCTGAGGGTGGTGCAGCAAGAAAAGATAAAGAT
GCTCCAGATGAGCAGTCAGTTGGGGCTGGGGTTGGTTGTCGCCCTGTACC
AGCGGTCGTCCCTGCGAAGCCACCAGGAGAGGGGGGCTGCAGTGACATGG
CAGTGGGGTGAGTGGACATGGCTACACACGGACACGACTCTTGGGCGCTG
ACTAACCTCGGTGCGTGGCGAAATAAATCGTTGAGCACATCAAGCGAAGG
GAAATCAGCCGAGTTTGTCAAGAGCAGACAGCGCGAGGCTAGAAGGGCGA
TGTTGGGAGCTGCTCCTGAGGGTGGTGCAGCAAGAAAAGATAAAGATGCT
CCAGATGAGCAGTCAGTTGGGGCTGGGGTTGGTTGTCGCCCTGTACCAGC
GGTCGTCCCTGCGAAGCCACCAGGAGAGGGGGGCTGCAGTGACATGGCAG
TGGGGTGA
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