mRNA_P-lacustris_contig1002.131.1 (mRNA) Pleurocladia lacustris SAG_25_93

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-lacustris_contig1002.131.1
Unique NamemRNA_P-lacustris_contig1002.131.1
TypemRNA
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Homology
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BLAST of mRNA_P-lacustris_contig1002.131.1 vs. uniprot
Match: A0A6H5JEB8_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEB8_9PHAE)

HSP 1 Score: 289 bits (740), Expect = 1.280e-87
Identity = 170/268 (63.43%), Postives = 198/268 (73.88%), Query Frame = 2 
Query:   56 MASNSWRLHVGGVRLLISVLLLFSKPQATH--TAAEPTAHHNQLKK------------DTPAERRSGAAEPAVAVGATALPSGESAKGSTAAEVKMFDFSFSPVGPHGLQDTYAKAAAGAGDGDVEQEPHSAAAVPPSALSLRECSLGDVGVAEFARSPWVCGRTGVRALSLRQNQVTAVGMRALMESLRSSTDS-DRLACLELDFNPIGDAGAQPLPAYLKERAERGGGGLEELSLRFCDIGPAGCRYLSSALLKSATAAKIADNSD 814
            MAS +  L+ GG++LL SVLL  S P+A H  T+A  T+HH++L              DT +  R   AEPA+++   A+P  E   G+T  EV+M DFSFSP+GP GLQDT   AA    +G   + P + +  PPSALSLRECSLGD+GVAE ARSPWV G+ GVRALSLRQNQVTA G+RAL++SLRS+ DS DRLACLELDFNPIGDAGAQPLPAYLKERA RGGGGLEELSLRFCDIGPAGCRYLSSALLKSA AAKI+ N D
Sbjct:    1 MASKASVLNGGGLKLLTSVLLAISTPRAIHCGTSAGSTSHHDRLATAAAPPGDMTPPADTSSRSR---AEPALSI---AIPPREPVTGNTPLEVQMLDFSFSPLGPRGLQDTDIDAAGVVEEGQHHRYPDTNS--PPSALSLRECSLGDLGVAEVARSPWVRGKAGVRALSLRQNQVTAAGVRALLDSLRSAADSGDRLACLELDFNPIGDAGAQPLPAYLKERAARGGGGLEELSLRFCDIGPAGCRYLSSALLKSAAAAKISANDD 260
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BLAST of mRNA_P-lacustris_contig1002.131.1 vs. uniprot
Match: D8LLY3_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLY3_ECTSI)

HSP 1 Score: 257 bits (657), Expect = 9.440e-72
Identity = 146/200 (73.00%), Postives = 162/200 (81.00%), Query Frame = 2 
Query:  218 AEPAVAVGATALPSGESAKGSTAAEVKMFDFSFSPVGPHGLQDTYAKAAAGAGDGDVEQEPHSAAAVPPSALSLRECSLGDVGVAEFARSPWVCGRTGVRALSLRQNQVTAVGMRALMESLRSSTDS-DRLACLELDFNPIGDAGAQPLPAYLKERAERGGGGLEELSLRFCDIGPAGCRYLSSALLKSATAAKIADNSD 814
            AEP++AV   A+P  E A G+   EV+M DFSFSP+GP GLQDT   AA    +G   + P++    PPSALSLRECSLGD+GVAE ARSPWV G+ GVRALSLRQNQVTA G+RAL++SLRS+TDS DRLACLELDFNPIGDAGAQPLPAYLKERA RGGGGLEELSLRFCDIGPAG  YLSSALLKSA AAKIA N D
Sbjct:   13 AEPSLAV---AIPPHEPATGNAPLEVQMLDFSFSPLGPRGLQDTDIDAAGVVEEGQQHRHPNTNP--PPSALSLRECSLGDLGVAEVARSPWVRGKAGVRALSLRQNQVTAAGVRALLDSLRSATDSGDRLACLELDFNPIGDAGAQPLPAYLKERAARGGGGLEELSLRFCDIGPAG--YLSSALLKSAAAAKIAANDD 205
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BLAST of mRNA_P-lacustris_contig1002.131.1 vs. uniprot
Match: A0A835Z931_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z931_9STRA)

HSP 1 Score: 115 bits (289), Expect = 9.360e-24
Identity = 76/166 (45.78%), Postives = 91/166 (54.82%), Query Frame = 2 
Query:  296 KMFDFSFSPVGPHGLQDTYAKAAAGAGDGDVEQEPHSAAAVPPSALSLRECSLGDVGVAEFARSPWVCGRTGVRALSLRQNQVTAVGMRALMESLRSSTDSDRLACLELDFNPIGDAGAQPLPAYLKERAERGGGGLEELSLRFCDIGPAGCRYLSSALLKSATAA 793
            +  D SFS VGP G  +  +                S A+  PS L L+ECSLGD G  +   S  V    GV  LSLR N +  VG R+L++ LR  T  DRL  L LDFN IGDAG QPLPA LK+ +    G LE LSLRFC I  AGCR ++SAL K+   A
Sbjct:   53 QFIDLSFSHVGPVGASEVLSGL--------------SEASAAPSGLLLQECSLGDRGALDVVSSTLVSSPEGVGVLSLRHNHIGRVGSRSLLQHLR--TAPDRLQTLVLDFNLIGDAGLQPLPALLKDSSN---GRLESLSLRFCGISAAGCRSIASALSKAQVNA 199
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig1002.131.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JEB8_9PHAE1.280e-8763.43Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
D8LLY3_ECTSI9.440e-7273.00Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
A0A835Z931_9STRA9.360e-2445.78Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig1002contigP-lacustris_contig1002:36932..39566 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score260.4
Seed ortholog evalue1e-66
Seed eggNOG ortholog2880.D8LLY3
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.interleukin-8 biosynthetic process
EggNOG OGsKOG4308@1,KOG4308@2759
Ec32 ortholog descriptionHypothetical leucine rich repeat protein
Ec32 orthologEc-14_002100.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons3
Model size1535
Cds size888
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig1002.131.1prot_P-lacustris_contig1002.131.1Pleurocladia lacustris SAG_25_93polypeptideP-lacustris_contig1002 37524..39511 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815269.437565-UTR-P-lacustris_contig1002:36931..375231622815269.437565-UTR-P-lacustris_contig1002:36931..37523Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1002 36932..37523 -
1693493440.5155897-UTR-P-lacustris_contig1002:36931..375231693493440.5155897-UTR-P-lacustris_contig1002:36931..37523Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1002 36932..37523 -
1622815269.4806106-UTR-P-lacustris_contig1002:39511..395661622815269.4806106-UTR-P-lacustris_contig1002:39511..39566Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1002 39512..39566 -
1693493440.5683463-UTR-P-lacustris_contig1002:39511..395661693493440.5683463-UTR-P-lacustris_contig1002:39511..39566Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1002 39512..39566 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815269.447666-CDS-P-lacustris_contig1002:37523..377131622815269.447666-CDS-P-lacustris_contig1002:37523..37713Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1002 37524..37713 -
1693493440.5272663-CDS-P-lacustris_contig1002:37523..377131693493440.5272663-CDS-P-lacustris_contig1002:37523..37713Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1002 37524..37713 -
1622815269.4591568-CDS-P-lacustris_contig1002:38054..382661622815269.4591568-CDS-P-lacustris_contig1002:38054..38266Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1002 38055..38266 -
1693493440.5434334-CDS-P-lacustris_contig1002:38054..382661693493440.5434334-CDS-P-lacustris_contig1002:38054..38266Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1002 38055..38266 -
1622815269.468998-CDS-P-lacustris_contig1002:39025..395111622815269.468998-CDS-P-lacustris_contig1002:39025..39511Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1002 39026..39511 -
1693493440.5556183-CDS-P-lacustris_contig1002:39025..395111693493440.5556183-CDS-P-lacustris_contig1002:39025..39511Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1002 39026..39511 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-lacustris_contig1002.131.1

>prot_P-lacustris_contig1002.131.1 ID=prot_P-lacustris_contig1002.131.1|Name=mRNA_P-lacustris_contig1002.131.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=296bp
MASNSWRLHVGGVRLLISVLLLFSKPQATHTAAEPTAHHNQLKKDTPAER
RSGAAEPAVAVGATALPSGESAKGSTAAEVKMFDFSFSPVGPHGLQDTYA
KAAAGAGDGDVEQEPHSAAAVPPSALSLRECSLGDVGVAEFARSPWVCGR
TGVRALSLRQNQVTAVGMRALMESLRSSTDSDRLACLELDFNPIGDAGAQ
PLPAYLKERAERGGGGLEELSLRFCDIGPAGCRYLSSALLKSATAAKIAD
NSDTGTDNDNDNQPIGGVSTERGEDEQVDGEMETGVMEGTHCHPP*
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mRNA from alignment at P-lacustris_contig1002:36932..39566-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-lacustris_contig1002.131.1 ID=mRNA_P-lacustris_contig1002.131.1|Name=mRNA_P-lacustris_contig1002.131.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=2635bp|location=Sequence derived from alignment at P-lacustris_contig1002:36932..39566- (Pleurocladia lacustris SAG_25_93)
TTTCGCCGCTCGCCGCCCCGCCGACTTTGACAAACTGAGCACGACATGCA
TGTAGATGGCTTCGAACTCATGGAGACTACATGTTGGTGGAGTAAGGCTG
CTAATTTCCGTGCTTCTGCTGTTCTCGAAGCCCCAAGCAACCCACACAGC
TGCAGAACCGACCGCACATCATAATCAACTCAAGAAGGATACTCCAGCGG
AAAGGAGAAGCGGCGCTGCCGAGCCGGCCGTGGCTGTCGGGGCGACTGCT
TTGCCGTCTGGCGAGTCCGCCAAGGGAAGCACAGCAGCGGAGGTCAAAAT
GTTCGACTTCTCCTTCAGCCCCGTCGGGCCTCACGGCCTGCAAGACACCT
ACGCCAAAGCAGCAGCAGGAGCAGGAGACGGAGATGTTGAACAAGAGCCG
CACTCCGCAGCGGCGGTTCCACCTTCCGCCCTCAGCCTCCGGGAGTGTTC
CCTCGGGGACGTGGGGGTCGCAGAGTTTGCGAGATCCCCGTGGGTGTGTG
GCAGAACGGGAGTGAGGGCATTGTCGCTGCGGCAGAACCAGGTACGGAGC
TCACCACCAGCAGGTGCTTAATTAACACGTGGGTGCAGTGCGTGATCTCA
AAACAGCCAACATGTTTGCGCGTTAACGATCCCAAGAAGTGTTCTAGCAG
CACATAGGAGCGGCAGCAGCACAACAGCCCGCCGGGCGTGCGTGCGTTTC
CATTGTCTGTAACTATATTGTAGGCTGGGTTCTAATCACAGCGGAAAGTG
TGTAGCTTAATTGCAATCATGTACAACTGAGCGTTGTGCAACACACAACG
GTTTCAAGCAGACGTAACCGTCGTTGGGTTTTGCTTTTCTTCCCTCTAGT
TCTTTGTCCTCGGTGGTGCGTACGTCGTGTGTAGCATCAATGCACGAAGG
AAACTCTTCGATAACTCCTCATTACTGTAGTGTACAAGCGTTCTCTACTC
GTGGCAGTTACAGTACCCCTCTTGCTGGCGTGACCACCGTTGTGGCCTCG
GCAGAGCTGGTGCGGCTGTCCCGGTATCATGCATACAGCAGCAGCGATCG
ATAAGCGGCGTCGTTAGTCTGAAACGCCGTTCTTGCCATGTGGAAGAACG
GCAGCCTCGATAGGAACCTGTCGTTGCTGTCTGGCGACAATCTACGTACC
GAGGTCGTGTATATCAGCTGGTACATTTGCGGGATTTGTCCTCCTACGCG
AAAAACTACAAGCCATGGAGACCACACGCGCCTTTCACAACAAACGGCCC
GCCGCCCCCCTATCCGCCACCCCTACCACGGTCATCTCCCGCGAGAGCAG
GTGACAGCGGTCGGCATGCGAGCGCTGATGGAGTCCCTCCGCTCTTCGAC
CGACTCCGACAGGTTAGCCTGCCTCGAGCTCGACTTCAATCCTATTGGGG
ATGCGGGCGCGCAGCCCCTGCCGGCTTACCTGAAAGAGCGCGCAGAGAGG
GGGGGCGGCGGGCTGGAGGAGCTGTCGCTGCGGTTTTGCGACATCGGGCC
GGCGGGATGCAGGTTGGCTTTGGCCCGGTCTAGCTACAGTCGAGAGGGAC
AGCGAAGAGTTGGGTTATTTGTCGGGGTGGCACTCGACAGGCGCCAGGAC
AACATGCGCGTGATCGTGAGCATGCGCATGAAGGGAAGGGACGAAGCGGG
TGTTTTGTTCCCCGAAAGTCCGGCCGGCCGGAACCTGCCGATCCTCCGAT
CGTGCTGCGTTTGTTGTCGAGATAGGTCCTACTCGACTCGACACGAAAAA
TAACGACTACTGTCATCACGATCAACGCAAAGGAACCACAGCAGCATCGC
CAGCCAGAACTCACGCTCTTCCTCTCTCCCTCACTCCGTGTACCCTGTAT
CAGGTACCTCTCATCGGCGCTCTTGAAGAGCGCGACCGCCGCAAAGATTG
CCGATAACAGCGACACTGGCACTGACAACGACAACGATAACCAACCGATT
GGTGGGGTTTCTACCGAGCGGGGGGAAGACGAGCAGGTGGACGGGGAGAT
GGAGACGGGGGTGATGGAGGGTACTCACTGCCACCCCCCGTAGCTTCCGG
AATTCGACGGCTTCTTTTGACGGGAAATAATCGCCTCGGTGACGCGGGGG
TGAGAGCACTCGCGTCGGCGCTAAAGAAGGACTGTTCTCTCGAAGTTCTG
GACCTTACCAGGTAGTACGGTGTGGAATGCCGAAGTTGTGGTACGTATTT
GTAGCCGGCAGGATTGTTGTTGTTACTGTTGTTGTCGTTGTTGTTTTTGT
TGTCTCGACTCTAATAACCGTTCTGACGTATCCAGACCTCGTCTTCGGTC
CTCTCCAACGGCAGAGAATCGAATCTCGTGGCAATAAGCTAACCTTGGGA
TTGATTGGATACAATGAGTCTGCAGGAGAATGTCCCACCAATGCTGTTAT
CGTGACAAAATAAAGGTTCCTGAGCAGAGGCTGGTTGCGATGCAGGTGCC
GGTTTTTGGTTGTGGTATCTGTTTGAGGGCCACCTTTCGTTCGCTCGTAT
GCACATGCTCCAGTCTCTGTGCCCTTGCGTCCAATTATATAATCCTCCAT
CCGCCGCTTTTTTTAATGCTCGAATTGAAGACTAGAGCCCAGAATAGAAG
GTATGACGACACTCACGTTGATTGAAACTGCCCAG
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Coding sequence (CDS) from alignment at P-lacustris_contig1002:36932..39566-

>mRNA_P-lacustris_contig1002.131.1 ID=mRNA_P-lacustris_contig1002.131.1|Name=mRNA_P-lacustris_contig1002.131.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=1776bp|location=Sequence derived from alignment at P-lacustris_contig1002:36932..39566- (Pleurocladia lacustris SAG_25_93)
ATGGCTTCGAACTCATGGAGACTACATGTTGGTGGAGTAAGGCTGCTAAT
TTCCGTGCTTCTGCTGTTCTCGAAGCCCCAAGCAACCCACACAGCTGCAG
AACCGACCGCACATCATAATCAACTCAAGAAGGATACTCCAGCGGAAAGG
AGAAGCGGCGCTGCCGAGCCGGCCGTGGCTGTCGGGGCGACTGCTTTGCC
GTCTGGCGAGTCCGCCAAGGGAAGCACAGCAGCGGAGGTCAAAATGTTCG
ACTTCTCCTTCAGCCCCGTCGGGCCTCACGGCCTGCAAGACACCTACGCC
AAAGCAGCAGCAGGAGCAGGAGACGGAGATGTTGAACAAGAGCCGCACTC
CGCAGCGGCGGTTCCACCTTCCGCCCTCAGCCTCCGGGAGTGTTCCCTCG
GGGACGTGGGGGTCGCAGAGTTTGCGAGATCCCCGTGGGTGTGTGGCAGA
ACGGGAGTGAGGGCATTGTCGCTGCGGCAGAACCAGATGGCTTCGAACTC
ATGGAGACTACATGTTGGTGGAGTAAGGCTGCTAATTTCCGTGCTTCTGC
TGTTCTCGAAGCCCCAAGCAACCCACACAGCTGCAGAACCGACCGCACAT
CATAATCAACTCAAGAAGGATACTCCAGCGGAAAGGAGAAGCGGCGCTGC
CGAGCCGGCCGTGGCTGTCGGGGCGACTGCTTTGCCGTCTGGCGAGTCCG
CCAAGGGAAGCACAGCAGCGGAGGTCAAAATGTTCGACTTCTCCTTCAGC
CCCGTCGGGCCTCACGGCCTGCAAGACACCTACGCCAAAGCAGCAGCAGG
AGCAGGAGACGGAGATGTTGAACAAGAGCCGCACTCCGCAGCGGCGGTTC
CACCTTCCGCCCTCAGCCTCCGGGAGTGTTCCCTCGGGGACGTGGGGGTC
GCAGAGTTTGCGAGATCCCCGTGGGTGTGTGGCAGAACGGGAGTGAGGGC
ATTGTCGCTGCGGCAGAACCAGGTGACAGCGGTCGGCATGCGAGCGCTGA
TGGAGTCCCTCCGCTCTTCGACCGACTCCGACAGGTTAGCCTGCCTCGAG
CTCGACTTCAATCCTATTGGGGATGCGGGCGCGCAGCCCCTGCCGGCTTA
CCTGAAAGAGCGCGCAGAGAGGGGGGGCGGCGGGCTGGAGGAGCTGTCGC
TGCGGTTTTGCGACATCGGGCCGGCGGGATGCAGGTGACAGCGGTCGGCA
TGCGAGCGCTGATGGAGTCCCTCCGCTCTTCGACCGACTCCGACAGGTTA
GCCTGCCTCGAGCTCGACTTCAATCCTATTGGGGATGCGGGCGCGCAGCC
CCTGCCGGCTTACCTGAAAGAGCGCGCAGAGAGGGGGGGCGGCGGGCTGG
AGGAGCTGTCGCTGCGGTTTTGCGACATCGGGCCGGCGGGATGCAGGTAC
CTCTCATCGGCGCTCTTGAAGAGCGCGACCGCCGCAAAGATTGCCGATAA
CAGCGACACTGGCACTGACAACGACAACGATAACCAACCGATTGGTGGGG
TTTCTACCGAGCGGGGGGAAGACGAGCAGGTGGACGGGGAGATGGAGACG
GGGGTGATGGAGGGTACTCACTGCCACCCCCCGTAGGTACCTCTCATCGG
CGCTCTTGAAGAGCGCGACCGCCGCAAAGATTGCCGATAACAGCGACACT
GGCACTGACAACGACAACGATAACCAACCGATTGGTGGGGTTTCTACCGA
GCGGGGGGAAGACGAGCAGGTGGACGGGGAGATGGAGACGGGGGTGATGG
AGGGTACTCACTGCCACCCCCCGTAG
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