mRNA_P-lacustris_contig1001.124.1 (mRNA) Pleurocladia lacustris SAG_25_93

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-lacustris_contig1001.124.1
Unique NamemRNA_P-lacustris_contig1001.124.1
TypemRNA
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig1001.124.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig1001contigP-lacustris_contig1001:11728..12053 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size326
Cds size324
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815269.0148208-CDS-P-lacustris_contig1001:11727..120511622815269.0148208-CDS-P-lacustris_contig1001:11727..12051Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1001 11728..12051 +
1693493440.2164629-CDS-P-lacustris_contig1001:11727..120511693493440.2164629-CDS-P-lacustris_contig1001:11727..12051Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1001 11728..12051 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig1001.124.1prot_P-lacustris_contig1001.124.1Pleurocladia lacustris SAG_25_93polypeptideP-lacustris_contig1001 11728..12051 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-lacustris_contig1001.124.1

>prot_P-lacustris_contig1001.124.1 ID=prot_P-lacustris_contig1001.124.1|Name=mRNA_P-lacustris_contig1001.124.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=108bp
RSVSTLHLVVDSEDMPARLLDDASPSETRSTNNANATRVPALCPLKVTWK
LPASALSRNRHIFDNVECFTLSDESNGAVDEVAWPPRLQRLFLGDAFNCS
LDNVSWPA
back to top

mRNA from alignment at P-lacustris_contig1001:11728..12053+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-lacustris_contig1001.124.1 ID=mRNA_P-lacustris_contig1001.124.1|Name=mRNA_P-lacustris_contig1001.124.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=326bp|location=Sequence derived from alignment at P-lacustris_contig1001:11728..12053+ (Pleurocladia lacustris SAG_25_93)
CGAAGCGTGTCGACGTTGCACTTGGTGGTGGACAGCGAGGATATGCCTGC
ACGGCTGTTGGATGATGCGTCACCTTCGGAGACCCGTAGCACCAATAACG
CCAACGCAACGCGCGTGCCGGCGCTTTGCCCGCTCAAGGTTACGTGGAAG
CTACCCGCATCGGCACTGAGTCGAAACAGGCATATTTTCGACAATGTGGA
GTGCTTCACCCTAAGCGATGAGTCGAACGGTGCTGTGGACGAGGTGGCGT
GGCCTCCTCGGCTTCAGCGGCTGTTCCTCGGCGACGCGTTCAACTGTTCG
TTGGACAATGTCTCCTGGCCGGCATC
back to top

Coding sequence (CDS) from alignment at P-lacustris_contig1001:11728..12053+

>mRNA_P-lacustris_contig1001.124.1 ID=mRNA_P-lacustris_contig1001.124.1|Name=mRNA_P-lacustris_contig1001.124.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=648bp|location=Sequence derived from alignment at P-lacustris_contig1001:11728..12053+ (Pleurocladia lacustris SAG_25_93)
CGAAGCGTGTCGACGTTGCACTTGGTGGTGGACAGCGAGGATATGCCTGC
ACGGCTGTTGGATGATGCGTCACCTTCGGAGACCCGTAGCACCAATAACG
CCAACGCAACGCGCGTGCCGGCGCTTTGCCCGCTCAAGGTTACGTGGAAG
CTACCCGCATCGGCACTGAGTCGAAACAGGCATATTTTCGACAATGTGGA
GTGCTTCACCCTAAGCGATGAGTCGAACGGTGCTGTGGACGAGGTGGCGT
GGCCTCCTCGGCTTCAGCGGCTGTTCCTCGGCGACGCGTTCAACTGTTCG
TTGGACAATGTCTCCTGGCCGGCACGAAGCGTGTCGACGTTGCACTTGGT
GGTGGACAGCGAGGATATGCCTGCACGGCTGTTGGATGATGCGTCACCTT
CGGAGACCCGTAGCACCAATAACGCCAACGCAACGCGCGTGCCGGCGCTT
TGCCCGCTCAAGGTTACGTGGAAGCTACCCGCATCGGCACTGAGTCGAAA
CAGGCATATTTTCGACAATGTGGAGTGCTTCACCCTAAGCGATGAGTCGA
ACGGTGCTGTGGACGAGGTGGCGTGGCCTCCTCGGCTTCAGCGGCTGTTC
CTCGGCGACGCGTTCAACTGTTCGTTGGACAATGTCTCCTGGCCGGCA
back to top