mRNA_P-lacustris_contig1001.127.1 (mRNA) Pleurocladia lacustris SAG_25_93

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-lacustris_contig1001.127.1
Unique NamemRNA_P-lacustris_contig1001.127.1
TypemRNA
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig1001.127.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig1001contigP-lacustris_contig1001:65211..68261 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size771
Cds size603
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig1001.127.1prot_P-lacustris_contig1001.127.1Pleurocladia lacustris SAG_25_93polypeptideP-lacustris_contig1001 67659..68261 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815268.9441466-UTR-P-lacustris_contig1001:65210..653181622815268.9441466-UTR-P-lacustris_contig1001:65210..65318Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1001 65211..65318 +
1693493440.1879227-UTR-P-lacustris_contig1001:65210..653181693493440.1879227-UTR-P-lacustris_contig1001:65210..65318Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1001 65211..65318 +
1622815268.9585629-UTR-P-lacustris_contig1001:67599..676581622815268.9585629-UTR-P-lacustris_contig1001:67599..67658Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1001 67600..67658 +
1693493440.1957285-UTR-P-lacustris_contig1001:67599..676581693493440.1957285-UTR-P-lacustris_contig1001:67599..67658Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1001 67600..67658 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815268.9706094-CDS-P-lacustris_contig1001:67658..682611622815268.9706094-CDS-P-lacustris_contig1001:67658..68261Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1001 67659..68261 +
1693493440.2036283-CDS-P-lacustris_contig1001:67658..682611693493440.2036283-CDS-P-lacustris_contig1001:67658..68261Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1001 67659..68261 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-lacustris_contig1001.127.1

>prot_P-lacustris_contig1001.127.1 ID=prot_P-lacustris_contig1001.127.1|Name=mRNA_P-lacustris_contig1001.127.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=201bp
MSRSQGGASDKSSDSAAAQRMDKIEESISRISKTMELMMDMISRLAAVPG
GAAQEGERTSGGAQVGAPQATLGVTVGAGGTTAGRRPASLPESVGPAIGQ
QGSGDVRGFAPTGMVAAGGGGFAGPGSAFGSDGVGSGVFPRNHPHNSQQQ
LLQRIKPPLLKGKDNYSTFKRDFLQAAKCVGLFEQYTGDDVRAVPVGDPK
H
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mRNA from alignment at P-lacustris_contig1001:65211..68261+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-lacustris_contig1001.127.1 ID=mRNA_P-lacustris_contig1001.127.1|Name=mRNA_P-lacustris_contig1001.127.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=3051bp|location=Sequence derived from alignment at P-lacustris_contig1001:65211..68261+ (Pleurocladia lacustris SAG_25_93)
AAGGCCAGAGCAAGAGGGCAAGAGCGGAGTGCAGCAGGACTCAACCTCCC
TCGAAGGCAGGTTGGACGTTGTCCGTGGCGTTGTTGGGAGCTCCGGAATC
GGAATCAGGCGAGTGCAGGCCCACGATTACCGGCAACATCTCTAGGAACA
GCGTCGTCGAGGTGTAGAACACACTTTACTGCCTGAAATGTAGCCCGACA
CGATCTCTCAACATGCGCGGCTACATAAGGGTTAACTACGCATTTTCCAA
ACCGAACGGCAACATGAATGCCGTTCCTCACGTGAATATCTTGCCTATCC
CGAGCTCCTTGGTCGATACAGATATTTTGTTGTTGTTTTTGTTCACTAGA
TGACAGCGGCCTAAATGCACACCCGTACTCAATGTCAGTTGTTGTGGCAT
GGGGTAGTTGATCTAAACCGACGCGGTACACTGCCGACCTTTCGCCCCCC
TGAGCTGGTACAGCGATGAGAATGCAAGGCCAAGGAATCTTACGTTGAGG
CTATCAAACTAGCGGACCTCGCCTAGAGTCAGGCAGGCTCGCGGGGGTCT
CATCCACGCGCTCACTTAGGCTAGGGGGGATCACCTCCTCGCCCCGTTCC
GCGGGCACTATCGTTCAACCGATGCCTACCTTATTCCACACAAGATACCA
CACCCCTTGGACCGATTTCAATTCTCGATTTCTTCACACAAGAGACGGTG
CCAACACCATGCCACTCGTCCGTGGAAAGGAATGAATGTCACCTGCTAGT
GCTACCCATTTGGGTATTGGTACTCTCCATGCTCTCAGAAATCGACTGCT
TCGAAAACCGATCCAGCGGGTGTGGTCTCTTCCGTGGAATACGGTACAGC
TGGAAGACTGTTGTTGTTGTTGGTTGTATGGCATTGTTGTATTTGGGGCG
TGCTCGCGGGTTCGTTGCCGCCGCCCCCACATGTTTGCTACTACTGTTTT
CTTTGCCCTCGAGCAACCTTTGGAACCGACGCTTCCCCTTGCTGCAAATC
ATGTGTTGTGCGAGCCTCGCACAGAGTTATGGTGGCTCTTCTTCACGCCG
CCGTACGTCGAGCGAGGTGTCTATTTCTTCCTCTGAGACATCGTGTAGCT
TGATGTTTTGGATGCTTTGTCCCATTTTGCCCTACGGTTCTGAACACTTG
AAGATATTGTACGTTTGCCACCACGCTACGCAGCGGCATGCATGCAGCCT
GTGTACGGAGTCACCAGCTTGGCTATACTTCTATCAGTTCATTGCTAGTC
TAGTGGGCGGATATGGATATGGCAGCTGTAGTTTTTTTTCGTATGCCCAT
GTTGTGTGAGCTCCAGAGTCCAAAGAGTGTTGTTAACCACATGTATTAGA
TCGTAGAGGGAGACATGAGAGAGAAGGAAGAGGAGGAGATGCTCGGGAGA
GCGCTCCCCAGGACCCCGCGAATCACCTGCTGTAACCCCTAGGGCGGTAA
TACATTCCTATCTGCGACCCTACGAAAGACGGCTCATTCCAGATATTGGA
ACTACAGTAATCGATGCACCGACGAACACCCTCCCTGGTTCTGCACGCCA
GTAAATAACCCCTAAGGAGCGTCATGGATTTCCCAAACCAGAATTAATTC
TAGCACAAAAAAAACGTGATGAGGGGAAACCCGGTCACCGGATCAAAACC
CCTCGCGGAATGTCCCCCATCGGAAACCACAGCAGTATTCACGGCAACGA
GACTCGGCACTAGCTAGAGGGACGATAAAATGCGAAATCAATTCTGCCCC
GCGAGTATACTTATCTGCAATGAGAGGTGATCAGTCCCTCGCTCAAACCT
TGAGAAAACCCATACAGAAAACAAGTGCCGCATGACATCTCTCTCATCAC
CGGGGTGCAATGAATGTCTGCTCTACATGAATCCATCACTACAATGAATC
CATCAGGTTACGAGCGGCCGACATACCTCCTGAAAAGGAACACGTGAACA
CCCTCCCTGGTTCTTCACGCCAGTGACTAACCACTCGTGCGTCGAAAAGT
GCATCCGGACAGAAGATACCGAAAAACAACGCCAATCGAAAAATAAGGGG
AAACTCGCTATCGGATCAAAAGCCCTCACGAAGCTCAACGCGTTCACGCC
GTTCATACTCAAAATATTCCAACGGTCGTACTACGGCAGACCAAAGTAGG
GCAATATACTACCGCCCCCAGGACTCGTTCCGCACGCCGCGCGTGGGTGA
CTTCACAATATCCGTCCTTGCGCAGCACAAGAATACAATCGACCACGTCC
TCACCCCGTTGGTGAAGCTGTACGACAAACTTCTTCAAAACCACAAATAA
ATGAGCAACTGAACACTGTTGTTGTTGTCTGCTCCTAGAACAAAGTCCTG
ACGATCTAAGCGCTATGCCCTCCCTTGCGCAACTCGCAGCCTAGTAGGGG
GCGACGAACACACTAGTGTTATAATCCTTCGAAGGAGCCTTTCCGAAGAT
GTCGCGATCGCAAGGTGGTGCGAGCGACAAGAGCAGCGACTCCGCAGCCG
CCCAGAGAATGGATAAGATTGAGGAGTCCATATCGCGCATCAGCAAGACC
ATGGAGTTGATGATGGACATGATATCCCGATTAGCGGCCGTGCCCGGAGG
CGCAGCCCAGGAGGGAGAGCGAACGAGCGGCGGAGCCCAGGTAGGGGCCC
CGCAAGCCACTCTTGGTGTCACGGTTGGCGCAGGAGGAACAACAGCAGGA
AGGAGACCAGCGAGTCTTCCTGAGAGTGTTGGCCCGGCGATCGGGCAACA
GGGTAGCGGCGACGTCAGGGGCTTTGCCCCCACAGGTATGGTAGCCGCTG
GTGGTGGTGGTTTTGCTGGTCCTGGTTCTGCGTTCGGAAGCGATGGCGTT
GGCAGCGGGGTATTCCCAAGAAACCACCCGCACAACAGTCAACAGCAGCT
TTTACAGCGAATAAAACCACCCCTTTTGAAGGGAAAAGACAACTATTCCA
CATTCAAGCGTGATTTTCTCCAGGCCGCCAAGTGCGTCGGACTGTTCGAG
CAATATACTGGTGATGATGTACGTGCGGTGCCAGTGGGCGACCCGAAGCA
C
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Coding sequence (CDS) from alignment at P-lacustris_contig1001:65211..68261+

>mRNA_P-lacustris_contig1001.127.1 ID=mRNA_P-lacustris_contig1001.127.1|Name=mRNA_P-lacustris_contig1001.127.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=1206bp|location=Sequence derived from alignment at P-lacustris_contig1001:65211..68261+ (Pleurocladia lacustris SAG_25_93)
ATGTCGCGATCGCAAGGTGGTGCGAGCGACAAGAGCAGCGACTCCGCAGC
CGCCCAGAGAATGGATAAGATTGAGGAGTCCATATCGCGCATCAGCAAGA
CCATGGAGTTGATGATGGACATGATATCCCGATTAGCGGCCGTGCCCGGA
GGCGCAGCCCAGGAGGGAGAGCGAACGAGCGGCGGAGCCCAGGTAGGGGC
CCCGCAAGCCACTCTTGGTGTCACGGTTGGCGCAGGAGGAACAACAGCAG
GAAGGAGACCAGCGAGTCTTCCTGAGAGTGTTGGCCCGGCGATCGGGCAA
CAGGGTAGCGGCGACGTCAGGGGCTTTGCCCCCACAGGTATGGTAGCCGC
TGGTGGTGGTGGTTTTGCTGGTCCTGGTTCTGCGTTCGGAAGCGATGGCG
TTGGCAGCGGGGTATTCCCAAGAAACCACCCGCACAACAGTCAACAGCAG
CTTTTACAGCGAATAAAACCACCCCTTTTGAAGGGAAAAGACAACTATTC
CACATTCAAGCGTGATTTTCTCCAGGCCGCCAAGTGCGTCGGACTGTTCG
AGCAATATACTGGTGATGATGTACGTGCGGTGCCAGTGGGCGACCCGAAG
CACATGTCGCGATCGCAAGGTGGTGCGAGCGACAAGAGCAGCGACTCCGC
AGCCGCCCAGAGAATGGATAAGATTGAGGAGTCCATATCGCGCATCAGCA
AGACCATGGAGTTGATGATGGACATGATATCCCGATTAGCGGCCGTGCCC
GGAGGCGCAGCCCAGGAGGGAGAGCGAACGAGCGGCGGAGCCCAGGTAGG
GGCCCCGCAAGCCACTCTTGGTGTCACGGTTGGCGCAGGAGGAACAACAG
CAGGAAGGAGACCAGCGAGTCTTCCTGAGAGTGTTGGCCCGGCGATCGGG
CAACAGGGTAGCGGCGACGTCAGGGGCTTTGCCCCCACAGGTATGGTAGC
CGCTGGTGGTGGTGGTTTTGCTGGTCCTGGTTCTGCGTTCGGAAGCGATG
GCGTTGGCAGCGGGGTATTCCCAAGAAACCACCCGCACAACAGTCAACAG
CAGCTTTTACAGCGAATAAAACCACCCCTTTTGAAGGGAAAAGACAACTA
TTCCACATTCAAGCGTGATTTTCTCCAGGCCGCCAAGTGCGTCGGACTGT
TCGAGCAATATACTGGTGATGATGTACGTGCGGTGCCAGTGGGCGACCCG
AAGCAC
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