mRNA_P-lacustris_contig1001.125.1 (mRNA) Pleurocladia lacustris SAG_25_93

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-lacustris_contig1001.125.1
Unique NamemRNA_P-lacustris_contig1001.125.1
TypemRNA
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig1001.125.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig1001contigP-lacustris_contig1001:16508..16977 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size471
Cds size468
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815268.9057314-CDS-P-lacustris_contig1001:16507..169751622815268.9057314-CDS-P-lacustris_contig1001:16507..16975Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1001 16508..16975 +
1693493440.1782568-CDS-P-lacustris_contig1001:16507..169751693493440.1782568-CDS-P-lacustris_contig1001:16507..16975Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1001 16508..16975 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig1001.125.1prot_P-lacustris_contig1001.125.1Pleurocladia lacustris SAG_25_93polypeptideP-lacustris_contig1001 16508..16975 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-lacustris_contig1001.125.1

>prot_P-lacustris_contig1001.125.1 ID=prot_P-lacustris_contig1001.125.1|Name=mRNA_P-lacustris_contig1001.125.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=156bp
YKGCKICRKIGRKVTGHDPKQMWLPLLLSFPRYIERTQNMQENRKGRRQL
MTGSTRGSYILLPVLPPTILKEKAHDVKHTWFPLIPPAIYTKNAGTSARY
IERMQNSRYNKECTDAGGCCALSCDLLSLFPPAIYKEWSNPPLYSSNADN
RKECCL
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mRNA from alignment at P-lacustris_contig1001:16508..16977+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-lacustris_contig1001.125.1 ID=mRNA_P-lacustris_contig1001.125.1|Name=mRNA_P-lacustris_contig1001.125.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=470bp|location=Sequence derived from alignment at P-lacustris_contig1001:16508..16977+ (Pleurocladia lacustris SAG_25_93)
TACAAAGGATGCAAAATATGCAGGAAAATAGGAAGGAAGGTGACAGGTCA
TGACCCGAAGCAGATGTGGCTACCTCTACTTCTTTCCTTCCCCCGGTACA
TTGAAAGAACGCAAAATATGCAGGAAAATAGGAAAGGGAGGCGGCAGTTG
ATGACCGGAAGCACACGCGGCTCTTATATCCTCCTGCCGGTACTTCCTCC
CACTATCTTGAAAGAAAAAGCTCACGACGTGAAGCACACTTGGTTTCCGC
TAATTCCTCCCGCTATATATACAAAGAATGCTGGTACTTCTGCCCGTTAT
ATTGAGAGAATGCAAAACTCTCGCTACAATAAAGAATGCACAGACGCAGG
TGGCTGTTGCGCGCTTTCATGTGACCTGCTTTCGCTATTTCCTCCCGCTA
TATACAAAGAATGGTCAAATCCCCCGCTATATTCGAGCAATGCAGACAAC
AGGAAGGAGTGCTGCCTTCC
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Coding sequence (CDS) from alignment at P-lacustris_contig1001:16508..16977+

>mRNA_P-lacustris_contig1001.125.1 ID=mRNA_P-lacustris_contig1001.125.1|Name=mRNA_P-lacustris_contig1001.125.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=936bp|location=Sequence derived from alignment at P-lacustris_contig1001:16508..16977+ (Pleurocladia lacustris SAG_25_93)
TACAAAGGATGCAAAATATGCAGGAAAATAGGAAGGAAGGTGACAGGTCA
TGACCCGAAGCAGATGTGGCTACCTCTACTTCTTTCCTTCCCCCGGTACA
TTGAAAGAACGCAAAATATGCAGGAAAATAGGAAAGGGAGGCGGCAGTTG
ATGACCGGAAGCACACGCGGCTCTTATATCCTCCTGCCGGTACTTCCTCC
CACTATCTTGAAAGAAAAAGCTCACGACGTGAAGCACACTTGGTTTCCGC
TAATTCCTCCCGCTATATATACAAAGAATGCTGGTACTTCTGCCCGTTAT
ATTGAGAGAATGCAAAACTCTCGCTACAATAAAGAATGCACAGACGCAGG
TGGCTGTTGCGCGCTTTCATGTGACCTGCTTTCGCTATTTCCTCCCGCTA
TATACAAAGAATGGTCAAATCCCCCGCTATATTCGAGCAATGCAGACAAC
AGGAAGGAGTGCTGCCTTTACAAAGGATGCAAAATATGCAGGAAAATAGG
AAGGAAGGTGACAGGTCATGACCCGAAGCAGATGTGGCTACCTCTACTTC
TTTCCTTCCCCCGGTACATTGAAAGAACGCAAAATATGCAGGAAAATAGG
AAAGGGAGGCGGCAGTTGATGACCGGAAGCACACGCGGCTCTTATATCCT
CCTGCCGGTACTTCCTCCCACTATCTTGAAAGAAAAAGCTCACGACGTGA
AGCACACTTGGTTTCCGCTAATTCCTCCCGCTATATATACAAAGAATGCT
GGTACTTCTGCCCGTTATATTGAGAGAATGCAAAACTCTCGCTACAATAA
AGAATGCACAGACGCAGGTGGCTGTTGCGCGCTTTCATGTGACCTGCTTT
CGCTATTTCCTCCCGCTATATACAAAGAATGGTCAAATCCCCCGCTATAT
TCGAGCAATGCAGACAACAGGAAGGAGTGCTGCCTT
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