mRNA_P-lacustris_contig1000.123.1 (mRNA) Pleurocladia lacustris SAG_25_93

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-lacustris_contig1000.123.1
Unique NamemRNA_P-lacustris_contig1000.123.1
TypemRNA
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig1000.123.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig1000contigP-lacustris_contig1000:56169..56704 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size538
Cds size381
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815268.8108299-UTR-P-lacustris_contig1000:56168..563231622815268.8108299-UTR-P-lacustris_contig1000:56168..56323Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1000 56169..56323 +
1693493440.1370583-UTR-P-lacustris_contig1000:56168..563231693493440.1370583-UTR-P-lacustris_contig1000:56168..56323Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1000 56169..56323 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815268.8238516-CDS-P-lacustris_contig1000:56323..567041622815268.8238516-CDS-P-lacustris_contig1000:56323..56704Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1000 56324..56704 +
1693493440.1471386-CDS-P-lacustris_contig1000:56323..567041693493440.1471386-CDS-P-lacustris_contig1000:56323..56704Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1000 56324..56704 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig1000.123.1prot_P-lacustris_contig1000.123.1Pleurocladia lacustris SAG_25_93polypeptideP-lacustris_contig1000 56324..56704 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-lacustris_contig1000.123.1

>prot_P-lacustris_contig1000.123.1 ID=prot_P-lacustris_contig1000.123.1|Name=mRNA_P-lacustris_contig1000.123.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=127bp
MGFAAACVFSRPATLVSAKCRPWRAALERVCMAWAGRGGTLDDAMRMDGA
CVPCLCCVCGVVDLCAYTLHARAPSDESCNKLYAREPADESCRGIQRLEQ
VGPLPTRHDAAGGCCCSGFLRSEGRTP
back to top

mRNA from alignment at P-lacustris_contig1000:56169..56704+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-lacustris_contig1000.123.1 ID=mRNA_P-lacustris_contig1000.123.1|Name=mRNA_P-lacustris_contig1000.123.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=536bp|location=Sequence derived from alignment at P-lacustris_contig1000:56169..56704+ (Pleurocladia lacustris SAG_25_93)
GCGCGCATGCAACTTGCCTGAGTGGCCGTGTGCACACACGCAACAACACC
ACACACACAACACGTGGATTGTTATGCATTGGGGCGGCACCCATGACAAA
GCAAGAACAGATGGTTGGGAGCGTCAATCTCGTACTACGTTAGTTTTGCT
GCGGCATGGGTTTTGCTGCAGCATGTGTTTTTTCGAGACCTGCGACATTG
GTTTCGGCGAAGTGCCGGCCTTGGAGAGCGGCCTTGGAGAGAGTTTGTAT
GGCGTGGGCGGGGCGGGGCGGCACTCTTGATGATGCTATGAGGATGGATG
GAGCGTGTGTGCCTTGTCTGTGTTGCGTGTGTGGTGTTGTTGACTTGTGT
GCGTACACGCTGCATGCGCGCGCGCCATCAGATGAGAGTTGCAACAAGTT
GTATGCGCGCGAGCCGGCAGATGAGAGTTGCAGAGGTATCCAACGGTTGG
AGCAAGTAGGTCCGCTGCCAACACGTCACGACGCAGCGGGGGGATGCTGT
TGCAGCGGGTTCCTCCGCTCTGAAGGGCGTACTCCG
back to top

Coding sequence (CDS) from alignment at P-lacustris_contig1000:56169..56704+

>mRNA_P-lacustris_contig1000.123.1 ID=mRNA_P-lacustris_contig1000.123.1|Name=mRNA_P-lacustris_contig1000.123.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=762bp|location=Sequence derived from alignment at P-lacustris_contig1000:56169..56704+ (Pleurocladia lacustris SAG_25_93)
ATGGGTTTTGCTGCAGCATGTGTTTTTTCGAGACCTGCGACATTGGTTTC
GGCGAAGTGCCGGCCTTGGAGAGCGGCCTTGGAGAGAGTTTGTATGGCGT
GGGCGGGGCGGGGCGGCACTCTTGATGATGCTATGAGGATGGATGGAGCG
TGTGTGCCTTGTCTGTGTTGCGTGTGTGGTGTTGTTGACTTGTGTGCGTA
CACGCTGCATGCGCGCGCGCCATCAGATGAGAGTTGCAACAAGTTGTATG
CGCGCGAGCCGGCAGATGAGAGTTGCAGAGGTATCCAACGGTTGGAGCAA
GTAGGTCCGCTGCCAACACGTCACGACGCAGCGGGGGGATGCTGTTGCAG
CGGGTTCCTCCGCTCTGAAGGGCGTACTCCGATGGGTTTTGCTGCAGCAT
GTGTTTTTTCGAGACCTGCGACATTGGTTTCGGCGAAGTGCCGGCCTTGG
AGAGCGGCCTTGGAGAGAGTTTGTATGGCGTGGGCGGGGCGGGGCGGCAC
TCTTGATGATGCTATGAGGATGGATGGAGCGTGTGTGCCTTGTCTGTGTT
GCGTGTGTGGTGTTGTTGACTTGTGTGCGTACACGCTGCATGCGCGCGCG
CCATCAGATGAGAGTTGCAACAAGTTGTATGCGCGCGAGCCGGCAGATGA
GAGTTGCAGAGGTATCCAACGGTTGGAGCAAGTAGGTCCGCTGCCAACAC
GTCACGACGCAGCGGGGGGATGCTGTTGCAGCGGGTTCCTCCGCTCTGAA
GGGCGTACTCCG
back to top