mRNA_P-lacustris_contig1000.122.1 (mRNA) Pleurocladia lacustris SAG_25_93

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-lacustris_contig1000.122.1
Unique NamemRNA_P-lacustris_contig1000.122.1
TypemRNA
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig1000.122.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig1000contigP-lacustris_contig1000:48179..48462 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons2
Model size199
Cds size198
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815268.7627723-CDS-P-lacustris_contig1000:48178..482921622815268.7627723-CDS-P-lacustris_contig1000:48178..48292Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1000 48179..48292 +
1693493440.1110153-CDS-P-lacustris_contig1000:48178..482921693493440.1110153-CDS-P-lacustris_contig1000:48178..48292Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1000 48179..48292 +
1622815268.7752454-CDS-P-lacustris_contig1000:48377..484611622815268.7752454-CDS-P-lacustris_contig1000:48377..48461Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1000 48378..48461 +
1693493440.122796-CDS-P-lacustris_contig1000:48377..484611693493440.122796-CDS-P-lacustris_contig1000:48377..48461Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1000 48378..48461 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig1000.122.1prot_P-lacustris_contig1000.122.1Pleurocladia lacustris SAG_25_93polypeptideP-lacustris_contig1000 48179..48461 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-lacustris_contig1000.122.1

>prot_P-lacustris_contig1000.122.1 ID=prot_P-lacustris_contig1000.122.1|Name=mRNA_P-lacustris_contig1000.122.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=66bp
RRRLLANSVGRHVRWVRRSAPQNSGQAGCGYGCIGVRRLSGDMFGGFDAA
PPQRKPRQASAAANTP
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mRNA from alignment at P-lacustris_contig1000:48179..48462+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-lacustris_contig1000.122.1 ID=mRNA_P-lacustris_contig1000.122.1|Name=mRNA_P-lacustris_contig1000.122.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=284bp|location=Sequence derived from alignment at P-lacustris_contig1000:48179..48462+ (Pleurocladia lacustris SAG_25_93)
CGGCGGCGGCTTCTGGCGAACTCTGTCGGGCGACATGTTCGGTGGGTTCG
ACGGTCCGCCCCGCAGAACAGCGGCCAAGCCGGCTGCGGCTACGGCTGCA
TCGGCGTCCGGCGAGTTGTCTGGAGATATGTTCGATGGGTTCGACGGACC
TCCTCGCTCGCGGCCGTCGCCGCCTGCACCACCGGTAGCCGCCGGGGAGC
TGTCCGGCGACATGTTCGGCGGCTTCGATGCCGCGCCGCCGCAGAGGAAG
CCTAGGCAGGCGTCTGCCGCTGCCAACACGCCCT
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Coding sequence (CDS) from alignment at P-lacustris_contig1000:48179..48462+

>mRNA_P-lacustris_contig1000.122.1 ID=mRNA_P-lacustris_contig1000.122.1|Name=mRNA_P-lacustris_contig1000.122.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=396bp|location=Sequence derived from alignment at P-lacustris_contig1000:48179..48462+ (Pleurocladia lacustris SAG_25_93)
CGGCGGCGGCTTCTGGCGAACTCTGTCGGGCGACATGTTCGGTGGGTTCG
ACGGTCCGCCCCGCAGAACAGCGGCCAAGCCGGCTGCGGCTACGGCTGCA
TCGGCGTCCGGCGACGGCGGCGGCTTCTGGCGAACTCTGTCGGGCGACAT
GTTCGGTGGGTTCGACGGTCCGCCCCGCAGAACAGCGGCCAAGCCGGCTG
CGGCTACGGCTGCATCGGCGTCCGGCGACTGTCCGGCGACATGTTCGGCG
GCTTCGATGCCGCGCCGCCGCAGAGGAAGCCTAGGCAGGCGTCTGCCGCT
GCCAACACGCCCCTGTCCGGCGACATGTTCGGCGGCTTCGATGCCGCGCC
GCCGCAGAGGAAGCCTAGGCAGGCGTCTGCCGCTGCCAACACGCCC
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