mRNA_P-lacustris_contig1000.120.1 (mRNA) Pleurocladia lacustris SAG_25_93

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-lacustris_contig1000.120.1
Unique NamemRNA_P-lacustris_contig1000.120.1
TypemRNA
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Homology
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BLAST of mRNA_P-lacustris_contig1000.120.1 vs. uniprot
Match: D7G824_ECTSI (PDZ domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G824_ECTSI)

HSP 1 Score: 81.6 bits (200), Expect = 1.630e-13
Identity = 41/62 (66.13%), Postives = 48/62 (77.42%), Query Frame = 1 
Query:  184 GPALEKLLAHDFSSPRGRSVAEKNAHIPVRKRKFQFAAAVFLLPRPTMLKGLAGQSVLSVND 369
            G  LEKLLAHDFSSPRGRS AEKNA++ +RKRKF+ AAAVFLLPRP M+K      ++ V D
Sbjct: 1864 GQRLEKLLAHDFSSPRGRSAAEKNAYVLLRKRKFKSAAAVFLLPRPAMVKEALQVILMHVKD 1925
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BLAST of mRNA_P-lacustris_contig1000.120.1 vs. uniprot
Match: A0A6H5K928_9PHAE (PDZ domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K928_9PHAE)

HSP 1 Score: 80.1 bits (196), Expect = 5.440e-13
Identity = 40/62 (64.52%), Postives = 47/62 (75.81%), Query Frame = 1 
Query:  184 GPALEKLLAHDFSSPRGRSVAEKNAHIPVRKRKFQFAAAVFLLPRPTMLKGLAGQSVLSVND 369
            G  LEKLLAHDFSSPRGRS AEKNA++ +RKRKF+ A AVFLLPRP M+K      ++ V D
Sbjct: 1955 GQRLEKLLAHDFSSPRGRSAAEKNAYVLLRKRKFKSAVAVFLLPRPAMVKEALQVILMHVKD 2016
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig1000.120.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G824_ECTSI1.630e-1366.13PDZ domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5K928_9PHAE5.440e-1364.52PDZ domain-containing protein n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig1000contigP-lacustris_contig1000:44306..46716 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score82.4
Seed ortholog evalue2.1e-13
Seed eggNOG ortholog2880.D7G824
Hectar predicted targeting categorymitochondrion
EggNOG free text desc.vacuolar proton-transporting V-type ATPase complex assembly
EggNOG OGsKOG1064@1,KOG1064@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons3
Model size884
Cds size477
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig1000.120.1prot_P-lacustris_contig1000.120.1Pleurocladia lacustris SAG_25_93polypeptideP-lacustris_contig1000 44306..46310 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815268.6286154-CDS-P-lacustris_contig1000:44305..443881622815268.6286154-CDS-P-lacustris_contig1000:44305..44388Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1000 44306..44388 +
1693493440.0411181-CDS-P-lacustris_contig1000:44305..443881693493440.0411181-CDS-P-lacustris_contig1000:44305..44388Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1000 44306..44388 +
1622815268.6405303-CDS-P-lacustris_contig1000:45419..455031622815268.6405303-CDS-P-lacustris_contig1000:45419..45503Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1000 45420..45503 +
1693493440.055292-CDS-P-lacustris_contig1000:45419..455031693493440.055292-CDS-P-lacustris_contig1000:45419..45503Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1000 45420..45503 +
1622815268.6517708-CDS-P-lacustris_contig1000:46000..463101622815268.6517708-CDS-P-lacustris_contig1000:46000..46310Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1000 46001..46310 +
1693493440.0635126-CDS-P-lacustris_contig1000:46000..463101693493440.0635126-CDS-P-lacustris_contig1000:46000..46310Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1000 46001..46310 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815268.6750252-UTR-P-lacustris_contig1000:46310..467161622815268.6750252-UTR-P-lacustris_contig1000:46310..46716Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1000 46311..46716 +
1693493440.0720866-UTR-P-lacustris_contig1000:46310..467161693493440.0720866-UTR-P-lacustris_contig1000:46310..46716Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1000 46311..46716 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-lacustris_contig1000.120.1

>prot_P-lacustris_contig1000.120.1 ID=prot_P-lacustris_contig1000.120.1|Name=mRNA_P-lacustris_contig1000.120.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=159bp
LQLEGRSHARGWRSSWRPPPFCRTRTSCWPDTLPALCSNVICRGTQKRKR
KGTKFIPTCNPGPALEKLLAHDFSSPRGRSVAEKNAHIPVRKRKFQFAAA
VFLLPRPTMLKGLAGQSVLSVNDTRKHTPKVTARGSTPGDSFFGPETRDR
KTKYSSTK*
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mRNA from alignment at P-lacustris_contig1000:44306..46716+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-lacustris_contig1000.120.1 ID=mRNA_P-lacustris_contig1000.120.1|Name=mRNA_P-lacustris_contig1000.120.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=2411bp|location=Sequence derived from alignment at P-lacustris_contig1000:44306..46716+ (Pleurocladia lacustris SAG_25_93)
CTCCAACTGGAAGGGAGATCACATGCCAGAGGGTGGCGGAGTTCGTGGCG
TCCACCACCTTTCTGCAGGACAAGGACCTCATGGCGGTGAGGGGATTGGT
CTTTAGGGACGTTGTGTCCCCGACAGCTGGCGACTCGTTGGACTTTTTCT
CTGCCCGGGTCGGGCAGGTATGCTCCTTCCCGTAGAGCCGGTAACAGGGG
GTGTGAGATTTGCTGAAGGGGGCTTGTGTTTGATTCTGGGCTGTTTCGGA
GCTCCTGTAGTAGGCCAGGCTCTGTCGTGTATTGAAGGCGAGTAAAATAC
GCGACGCATGTAGACTACTACTGCTGCTGCTGCTGCAGTTGCCAAGTGTT
GTTTTCCCACCGCCCCGCCTGTTTGCCCAGTTCCAAGCGTGCAAATTGGT
TGCCCCACTGATCTTTAGCGGAGCTGACACCTGCCTACCCGTTGCCGCCT
GGCCTTGTGTATCGCAACGCCTTGTGTCTTTTTGTGTCTGGCGTAGACTA
GGCTGCCATGTTCTTCGCGGCACTCGGCAAGGAGAAGAAGCGCTTGGGCC
AGAAGGGCGGACACAAAAATTGAAAATGCAGACTGCAGCAGTAGTGCATG
CAATCACCGTTCGAAGCAAACGCAGCCTAGTGACATGCTCGCGAAAAGAA
CGTGTCGATCGGTAGCGATGCGAGACCGCAAATGCATGTAGCACGACCTT
CGTTGCTTGCCTCCCTGCAACCATCATGGCGTACCCATTGTTTATTTTTT
CCTCTTCATCTGTTTCACACGCTGTTCACACACGCAAGGAACTACCCTTG
CCGCATTTCGTGTGCCACACTCACATGAGCTTCCTCCTCTTTCTCTTTTG
CGTGCCACGACATATTGCGTGTGAAAGAAGTGCAGGAAGGGTGTCCGGCC
AGCTTCAACCAAGATCAAGAAAAGCGACCAGCTCGTCAAAACCGTCATGG
TTTTGACATATTACGTTGGAAAAAAGTGCAGGAAGTGTGTCCGGCCAGCT
TCAACCAAGATCAAGAAAAGCGACCAGCCTTTCAAAACCATCATGGTTTT
GACGAGCTCATGGTTTTGACGATGGTTTTGACGAGCTGGTCGCTTTTCTT
GATCTTGGTTGAAGCTGGCCGGACACACTTCCTGCACTTTGTTCCAACGT
AATATGTCGTGGCACGCAAAAAAGGAAAAGAAAGGGGACGAAGTTCATGT
GAGTGTGGCACACGAAATGCGGCAAGGGTAGTTAAGGGCGGACACAGGGT
TCGTGGGGCAGCGGAATATCAGCGGCGGGGAGGGCGACATCAACTCCGCC
AGTTGTGAGGCTGAACGGGAGGTGCCGTGGCTCGTGCCGGGTGCGGGCAG
GAAATGGTTAGGGTTAAATCGTGCCGGATCCTGTTGTCTTGAAGCTACGG
ATGCGGCCGCTAGTTAACTTGAGTCAAAAGAAGCATCGTTGCTGAGGTGA
AAATGAGAACGGTACACTGAAAGCAGCGTTTTTGTTTCGTCGCCGTCAGT
TCAAGGTGTGCGATACCGCGGTTAGACAAACAAAGAACGGCCCTTTAATT
ATTCGCGTTTCATATCGTCAAGACTACACCCACAAAAACAATCCCTAGCT
TGCTTAGAAGGCGTATTGACGGAGAGCTTCAGTCACTCTCATGGATGTAC
TTGATATTCTGTCCCTGCACCGCTCTCTTGCCGACTGCCACGCAGCCCAA
CGTGCAACCCAGGGCCAGCGCTGGAGAAGCTCCTCGCACACGACTTCAGC
TCCCCTCGGGGGCGATCGGTGGCCGAGAAGAACGCCCACATCCCCGTCAG
GAAGAGGAAGTTCCAGTTCGCCGCCGCTGTCTTCCTGCTGCCGCGGCCCA
CAATGCTCAAAGGCCTTGCAGGTCAGAGTGTACTTAGCGTAAACGACACG
AGGAAGCACACCCCCAAGGTGACAGCACGAGGAAGCACACCGGGTGACAG
TTTTTTTGGGCCAGAAACACGTGACCGAAAAACAAAATACTCTTCGACCA
AGTAGTAGTGGTGACACAAGATAGCAAACCCCTCGCGATAATGCACTCCG
TGTGATGAAGCTGTTTAGACCAAAATCGTATGACAAGGGTGTGCTTTCTT
GTGTCGTTTACGGTAGTCTGGCCTTGGCGAAGGCGGGGGCGGGGGATGGA
ACTCGAGTCCACGAGTAAATATCATCGTAGCTAGTCGTAGAAGCACGACA
ACCCTCTTCGGAGGATTAGCGTGTCTGCAACAGCAGTCTCGCTCGAAAGT
TTTTTTTTCTGTAGGTTGGACGTGGACTGCTGACAATATGCGATGAAAAA
AGTACTAAGCAATGCTTGTACCGCAGGAGGAGGGGTGGGGGGCCTCGGGG
ATAGGAAACCTTCTGTGTGACCCCGGCCGGGTGCCACCCTCCACATCACC
GACAGGTGTAA
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Coding sequence (CDS) from alignment at P-lacustris_contig1000:44306..46716+

>mRNA_P-lacustris_contig1000.120.1 ID=mRNA_P-lacustris_contig1000.120.1|Name=mRNA_P-lacustris_contig1000.120.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=954bp|location=Sequence derived from alignment at P-lacustris_contig1000:44306..46716+ (Pleurocladia lacustris SAG_25_93)
CTCCAACTGGAAGGGAGATCACATGCCAGAGGGTGGCGGAGTTCGTGGCG
TCCACCACCTTTCTGCAGGACAAGGACCTCATGCTCCAACTGGAAGGGAG
ATCACATGCCAGAGGGTGGCGGAGTTCGTGGCGTCCACCACCTTTCTGCA
GGACAAGGACCTCATGCTGGCCGGACACACTTCCTGCACTTTGTTCCAAC
GTAATATGTCGTGGCACGCAAAAAAGGAAAAGAAAGGGGACGAAGTTCAT
CTGGCCGGACACACTTCCTGCACTTTGTTCCAACGTAATATGTCGTGGCA
CGCAAAAAAGGAAAAGAAAGGGGACGAAGTTCATCCCAACGTGCAACCCA
GGGCCAGCGCTGGAGAAGCTCCTCGCACACGACTTCAGCTCCCCTCGGGG
GCGATCGGTGGCCGAGAAGAACGCCCACATCCCCGTCAGGAAGAGGAAGT
TCCAGTTCGCCGCCGCTGTCTTCCTGCTGCCGCGGCCCACAATGCTCAAA
GGCCTTGCAGGTCAGAGTGTACTTAGCGTAAACGACACGAGGAAGCACAC
CCCCAAGGTGACAGCACGAGGAAGCACACCGGGTGACAGTTTTTTTGGGC
CAGAAACACGTGACCGAAAAACAAAATACTCTTCGACCAAGTAGCCCAAC
GTGCAACCCAGGGCCAGCGCTGGAGAAGCTCCTCGCACACGACTTCAGCT
CCCCTCGGGGGCGATCGGTGGCCGAGAAGAACGCCCACATCCCCGTCAGG
AAGAGGAAGTTCCAGTTCGCCGCCGCTGTCTTCCTGCTGCCGCGGCCCAC
AATGCTCAAAGGCCTTGCAGGTCAGAGTGTACTTAGCGTAAACGACACGA
GGAAGCACACCCCCAAGGTGACAGCACGAGGAAGCACACCGGGTGACAGT
TTTTTTGGGCCAGAAACACGTGACCGAAAAACAAAATACTCTTCGACCAA
GTAG
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