mRNA_P-lacustris_contig1000.118.1 (mRNA) Pleurocladia lacustris SAG_25_93

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-lacustris_contig1000.118.1
Unique NamemRNA_P-lacustris_contig1000.118.1
TypemRNA
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig1000.118.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig1000contigP-lacustris_contig1000:27167..28832 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size183
Cds size183
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815268.5888073-CDS-P-lacustris_contig1000:27166..272591622815268.5888073-CDS-P-lacustris_contig1000:27166..27259Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1000 27167..27259 -
1693493440.020053-CDS-P-lacustris_contig1000:27166..272591693493440.020053-CDS-P-lacustris_contig1000:27166..27259Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1000 27167..27259 -
1622815268.5988138-CDS-P-lacustris_contig1000:28742..288321622815268.5988138-CDS-P-lacustris_contig1000:28742..28832Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1000 28743..28832 -
1693493440.0307417-CDS-P-lacustris_contig1000:28742..288321693493440.0307417-CDS-P-lacustris_contig1000:28742..28832Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1000 28743..28832 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig1000.118.1prot_P-lacustris_contig1000.118.1Pleurocladia lacustris SAG_25_93polypeptideP-lacustris_contig1000 27167..28832 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-lacustris_contig1000.118.1

>prot_P-lacustris_contig1000.118.1 ID=prot_P-lacustris_contig1000.118.1|Name=mRNA_P-lacustris_contig1000.118.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=61bp
QGCEYRQLYVNICETVPAPAQGHATPSLPGGSRGDRRGLLLMLCATKPSP
AARQLANGEW*
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mRNA from alignment at P-lacustris_contig1000:27167..28832-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-lacustris_contig1000.118.1 ID=mRNA_P-lacustris_contig1000.118.1|Name=mRNA_P-lacustris_contig1000.118.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=1666bp|location=Sequence derived from alignment at P-lacustris_contig1000:27167..28832- (Pleurocladia lacustris SAG_25_93)
CAAGGTTGCGAATATCGTCAGCTATATGTAAACATTTGTGAAACGGTCCC
AGCTCCAGCCCAAGGACACGCGACGCCTTCTTTACCTGGGGCGAGCCGTG
AGACATGGGGAAAATGTCAAGGCGGTGGCCTGACGACAAGGGGGGACACA
TATCGCACAAATACGTGTGGTCATCGGTATTCGATATTCGGTTACGTGTA
CGTGGCGTACGGCTGGACGGTATGCTGTGTTTGCTCAAGGCTTTAAATCC
GAATCCGCACCATGCTACTACTGTATCCCACATTTCGAGGAATTTGCTAG
TGTCTGGCCACAACTAATACACTGGTCGATACGTGTTTACTTGGTCAGCT
GCCCATGCGTGCTGCGCGGACCGCATGAGCTTGAAGTACATCCCTTGGAG
TGCTTTCAAGTCAGCCCGCGTAAATAACCATGCGAAGTGTTCCATCCGAA
CACAATGCAGCTGAAAATAGCAGCCATGGCGTTATAATTTTAATTAGCAT
GTGTGTGAGACGTAGCTGTCTCGCAAGGTTCGCGCTGCGGCAAGGTTCTT
CTTCTTGTTGCCGCCAAGCACTCAAACACGCGAAGACGTCGATGATGGGA
CGGCGTATAGCCTGTACCGCAGCGTTAACCACTGAGGCCAATTGTGAGAC
GTAGCTGTCTCGCAAGGCTCGCGCTGCGGCAAGGTTCTTCGCGTATGTGC
GGCGTGAAGGACACGCCGGGGTCACCCTCTCGCGAGAGAGGGAGAACCGA
GGTCGGACGGAAAGAGAGTAACGACAGGGGTGAGAGAGACGAGGGGGCGA
CGCAGGAACTCGGAGAGTTCCGCGCCGTACTCTCTCCATCTGTCCAGCCA
GCGGGATCGTCTTCAAGTCCATGCAGATCCTTGGAGAACCCAAGGGTTCT
GTATGGGGACCCGGGGATTCTATGGTGGCATTCACATGTGAGAAAAAGCA
ATCATTCGCAGAGTGCGGGTGTTCACTCGATTTTCGTCTGCCAGAAGAAA
AGAGAGCCAGACTGATAGACATAATAGGTATTCGCAGCACGTGTAGGTAT
ATGTTGTAAATCTGGGTCCGTTCTCAGGAACATTCTTATTATGGTTCTAT
TCGGGGATTTGGTTCTCGGGGCATTATCTGGTCATAGGTTATGTGTCCCG
GCATGTTTTGTATGCGTGGCGACCCCATGCGTTCAGTTGGTGTTGGTGTT
GGTTTGTTTCGTGCGGTTCCACCATCTCCGTGTCCTCGTTGGTGCACGTT
CATAAGAAGTGTATAAACCCAAAGAACCCATAAGACTTCTTCCCTACAGC
AGCAAGGCGCGGCCCCTGCAGTAGATCACGTCCACACAGAAAAGACAGCA
TGTTTTTTCATGTGTTTGCCTCTCATTTTCGCGGAGGCAAACCCCTGCAG
GCACGAAAAACATTCAACACTCAGAAATCAAGTAGTCTACACTTCTGATG
AGGGGCGGCTGCAGGGTCGGGGTCAACTGCAGATTGATGCACAAGGAATG
ATCGAGCATGCCCTATTGTCGAAGTAGGATGTGGGAGGGCCTTCATAGGG
CCGGGTTTTCATCTTACTTGAAGGGCAGCCGTGGCGACCGGCGCGGACTG
CTGCTCATGCTTTGCGCGACAAAACCCAGCCCAGCAGCACGACAACTCGC
CAACGGAGAATGGTGA
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Coding sequence (CDS) from alignment at P-lacustris_contig1000:27167..28832-

>mRNA_P-lacustris_contig1000.118.1 ID=mRNA_P-lacustris_contig1000.118.1|Name=mRNA_P-lacustris_contig1000.118.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=366bp|location=Sequence derived from alignment at P-lacustris_contig1000:27167..28832- (Pleurocladia lacustris SAG_25_93)
CAAGGTTGCGAATATCGTCAGCTATATGTAAACATTTGTGAAACGGTCCC
AGCTCCAGCCCAAGGACACGCGACGCCTTCTTTACCTGGGCAAGGTTGCG
AATATCGTCAGCTATATGTAAACATTTGTGAAACGGTCCCAGCTCCAGCC
CAAGGACACGCGACGCCTTCTTTACCTGGGGGCAGCCGTGGCGACCGGCG
CGGACTGCTGCTCATGCTTTGCGCGACAAAACCCAGCCCAGCAGCACGAC
AACTCGCCAACGGAGAATGGTGAGGCAGCCGTGGCGACCGGCGCGGACTG
CTGCTCATGCTTTGCGCGACAAAACCCAGCCCAGCAGCACGACAACTCGC
CAACGGAGAATGGTGA
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