mRNA_P-lacustris_contig1000.117.1 (mRNA) Pleurocladia lacustris SAG_25_93

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-lacustris_contig1000.117.1
Unique NamemRNA_P-lacustris_contig1000.117.1
TypemRNA
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig1000.117.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig1000contigP-lacustris_contig1000:20232..21904 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size173
Cds size132
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig1000.117.1prot_P-lacustris_contig1000.117.1Pleurocladia lacustris SAG_25_93polypeptideP-lacustris_contig1000 20273..21904 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815268.532958-UTR-P-lacustris_contig1000:20231..202721622815268.532958-UTR-P-lacustris_contig1000:20231..20272Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1000 20232..20272 -
1693493439.957274-UTR-P-lacustris_contig1000:20231..202721693493439.957274-UTR-P-lacustris_contig1000:20231..20272Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1000 20232..20272 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815268.544766-CDS-P-lacustris_contig1000:20272..203171622815268.544766-CDS-P-lacustris_contig1000:20272..20317Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1000 20273..20317 -
1693493439.9860482-CDS-P-lacustris_contig1000:20272..203171693493439.9860482-CDS-P-lacustris_contig1000:20272..20317Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1000 20273..20317 -
1622815268.5564525-CDS-P-lacustris_contig1000:21817..219041622815268.5564525-CDS-P-lacustris_contig1000:21817..21904Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1000 21818..21904 -
1693493440.0062149-CDS-P-lacustris_contig1000:21817..219041693493440.0062149-CDS-P-lacustris_contig1000:21817..21904Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1000 21818..21904 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-lacustris_contig1000.117.1

>prot_P-lacustris_contig1000.117.1 ID=prot_P-lacustris_contig1000.117.1|Name=mRNA_P-lacustris_contig1000.117.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=44bp
GHNFAKEEATATTRLSLERRRVGPSRTPKAPSSTDLFWGQRRR*
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mRNA from alignment at P-lacustris_contig1000:20232..21904-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-lacustris_contig1000.117.1 ID=mRNA_P-lacustris_contig1000.117.1|Name=mRNA_P-lacustris_contig1000.117.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=1673bp|location=Sequence derived from alignment at P-lacustris_contig1000:20232..21904- (Pleurocladia lacustris SAG_25_93)
GGCCATAACTTTGCAAAGGAGGAAGCAACGGCAACAACAAGGCTATCCCT
AGAGAGGCGGAGAGTTGGTCCATCTCGCACGCCCAAGGTGAGGGGCCGTG
GGGTTTTGTGCATGTCGGGGAATATCGTTGAAACTACTCTCTCTCGCAAT
AAGGACCAAACAAAAAAGAGCCGTTTTTGGGACTGCTGAGTGATGTGTAA
CCATTCAAAACGCATGGTAGAGAGAGGCTTTAGGCCAACGATATCCGCAA
ATAGCAGTCACTGGCGTGAGTTCATGAACATGTCCTCTGCACGGGTCGCA
AAAGCAGCGCATATGGTCTAGTTTTGATTGCACACGATGTGCAAATGTGA
ACCGAAGTGTTTTTCGATGTTGACTTTGTGACGTTTGTCTTTTTTTTGTT
GCTCCGGGTGTGGCCACTCGAAAACGCGTCCCAGAGGGAGGCCTTAGCCA
ACGATACCTAGAAACAGCAGTCACTCCTGGTGTGTGGGCATACACATGCC
CTCTGCAGGCAGCTCGAAAACAGGGCGATATGTGTCTTGTCGACCGCGCA
CCAGCCGAAAACGTGAACCGAAGCATTATGTTACCGCTTGAATCAGCCTT
TTTTCACCCTGGAAAAAATGCGCCTCCAGGTCCGTAAGAAGGTCAAACGG
GGCCTGCCGTTCAGATCCCACGAAATAAAATCCATTTCATATTTCCCCAA
ATAAAATCTGAAAATATCCCACCGTAAGAAACGGCCTAATTATTTTTTTG
AGCTGAGGCTTCGCCAGACCTTCAACTAGCTGCGATCTGATACAACCGTC
AAAATACCCGCGCAGAAGCACAGACATTTGTCCAGGTCAGGTGCCTTAAT
CCCCTCGGTTTACCCCCCAACAATGGCGAACCCGCCCCCCACCCGAAATG
TAGGCCGAAGAGTGGTCAAAACCTGAAATTGTCCCTGCGTTAGGGAAAAA
AAAACGAGAAAAATATGCCATCCTCTCCGGTGTATTTCCCCCTGTAGTAG
TGTTTTTCCGACGAGTGCGGCCCGGGGTATCACTAACTTTCATTTCTTTT
GTTATCACTTCGAAGCAAGTGCCCCGCTTCTGACACCAAATACGTCGTTT
CCATTTAGGCACTTAAGAGAGTCTGTGTCTGAGTGTCGACCCTGGTTGAT
CGCAACGCAACTGTGTTTGTGACTGTTTTGCCCTGTTTCGCCATGATGCA
ACCGGTGGTAGGACCTTCTACCTGTTGCCAAGGAATTCTTTGTCGACATC
TCCGGGTATAACCGTCGCCCTAACCGAGTTCATCCCCGCAAACGGCGGCG
ATGACTACAAGAGCGACGACGCCTTGGAACCAAATTTGGATGTAAAGCCT
GGTAATGCGGGGCGACCTTTTCGTCACTCGGCTAAACCTCGCAATCGACG
TTTGTGTGTATGGCATGGAACGGTACGGTAACATTTCGATCTGAAATAAA
TTCAATGTTCTCCGTTCTGCCGCGCATCCACTCAGTCTTCGTCCAGTCTT
CGAGGTAATAAACGTGGACGCCCTCATTAGATTGCGATCCTCACGATGAT
ACCCTCCGCGGCTTGCTGGTTTTAACGTCCCGTACAGGCGCCATCTAGCA
CGGACTTATTTTGGGGGCAACGTCGACGGTGACCCGCGCTAAAGTCTTCA
AACGGACGTGCGGGCGTTCCTCC
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Coding sequence (CDS) from alignment at P-lacustris_contig1000:20232..21904-

>mRNA_P-lacustris_contig1000.117.1 ID=mRNA_P-lacustris_contig1000.117.1|Name=mRNA_P-lacustris_contig1000.117.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=264bp|location=Sequence derived from alignment at P-lacustris_contig1000:20232..21904- (Pleurocladia lacustris SAG_25_93)
GGCCATAACTTTGCAAAGGAGGAAGCAACGGCAACAACAAGGCTATCCCT
AGAGAGGCGGAGAGTTGGTCCATCTCGCACGCCCAAGGGCCATAACTTTG
CAAAGGAGGAAGCAACGGCAACAACAAGGCTATCCCTAGAGAGGCGGAGA
GTTGGTCCATCTCGCACGCCCAAGGCGCCATCTAGCACGGACTTATTTTG
GGGGCAACGTCGACGGTGAGCGCCATCTAGCACGGACTTATTTTGGGGGC
AACGTCGACGGTGA
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