mRNA_P-lacustris_contig100.116.1 (mRNA) Pleurocladia lacustris SAG_25_93
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Overview
Homology
BLAST of mRNA_P-lacustris_contig100.116.1 vs. uniprot
Match: D8LEF4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LEF4_ECTSI) HSP 1 Score: 898 bits (2321), Expect = 2.220e-279 Identity = 871/1751 (49.74%), Postives = 969/1751 (55.34%), Query Frame = 2
Query: 800 LRRLQGDTEPSFPSRDGSTPAAESPLFSLPHMGPSRSPSVGSRGEGRRETRRRECPLETMSGDIGSYSARAGT---GETEGEAXXXXXELPAGSGSLLELRDALRSREKDLLRLKRDVAVVRTSAGSFKHLAASLGSSDADRPES----QWRRNGSELFRTGFDE----------------DGTSGAGEGRWAENDEPAAFRSHQSKQDATLGGLLLQRHSVDSALAGTASLFGTTSTGPPQTDSELARSRQVMPXXXXXXXXLTAASKGSAVVAVSGSPLVVSAHEGLRQMRAVLEQRALEAGRAKNNSKEMIKSLNDVSARLRRSESKRNAQAAELAEARAEAHAAKAELSRVLLRHRAKEKAALAAQQEKIRDKAVAARKEAAAAAPTGLLAAPEQQRQLRERDAEISRLRDRLETATGELSEEQGSNASLRARLEASEREIRRVRERAVAAEEEAEVAAAAKVAXXXXXXXXXXXXXXXXXXXXXXXXXXXEGRRQAREAMRARE-----------------SLKAEREGTARLALELEAAVRERTQAVEKQAEAEAEAGRLHVKLSSVSATAEENQALRRERDTARESLRTAEMELANVTAALVLAREGQEEERSRFDRESKRATALGEELVASEARRQVQEEEIALVRKQVSRLDAKIEGDMSRSKAKSDATARATAAVAEREANSLRADLREAKAELAASREXXXXXXXXXXXSLKAELVVAKEAAERXXXXXXXXXXXXXXXXXXXXAQARKLQRAAQAAQEDKDTLKRGLVASQTACAELRAERSRLLSELEHAASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGDAAAAANVLRTRTDLEGRLALALAESTEARAELKRLKRKVE-ICDREHRGTTA---LGTARRTRR---SGGETGDEDDGEFSVDGSRSHRKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVSGDRGSSSGLDDPRWPFGGRATRRKGGAAANERHNSIAAAPRTQGSGRGRIGRRRRAFSMDSTRSRVGDAGDRDHSHNSLGDFSDSGEDDSRVVSRAAIREASERLRFGAARLLDVRKEERKMAEDKVARLRQDLRDSESREADVTARLEESRELSREQTGFVEGVWKERHRLESELAARCEEVKRLRSSEDVARTAATTLGGKVEDLSAALKQEQARAKREAEAAVAAEARDAMDALRGQLNDLRREVDRTKQGQEHARSGGVGGGSGGSFRAAEGSVAAGVAFNSGNGGSRRKENFSSLNDAGSGVRGKEWRRGSLANAQGVVASPSSPSLVALEGEFQRLRIKYEKAKGRIVALEELVAASRRVSTQARREFQGALEALKLSQELLLKIHRQRQSRDDAVFVGPNDVTTSTPQPTAAPALSHP-QSGTTTHESRLETAGCTVDAGAGAGFTPSGGTA--ADPNGERPTSAATPA-STDVHVQELAAQASKLRGMSGNVKQLLQLAVGEVQGALEDTRESLGAA-AAAAEAGTQTVEGIC-LTKESFEALEQDLGETKATARALEAEKSRLDGELSAAFEELAKVQDLLREKAAEVLVLEAQVARLETERREAHAVASAA-NSRLAEAQLAERELSDTRVRLHAALATQGELRGRCAELSLASSAFASEVAKQKEERAKSQERARLAAEASAIEXXXXXXXXXXXXXXXXXXXXAERGRLERELAATRAEAREIDSDVAQVLDALASSEKERCRLEVELDRQTNIARAAR 5890
L RL+GD EPS P+ T +AE L P + S S SV G+G E+ RRE + SGD S S AGT G +G XXX A SG L ELRDALRSRE+DLLRLKRDV+VV TSA F+HL+ASLGS + +R S + R +G + D+ DG+ G G N+E AFR H +GG+LL+R DSAL GTA F T +T +D+ELA SR++ XXXX SKG+A++A SGSPLV SAHEGL++MRAVLEQRALE GRA ++SKEM SLNDVSARLRRSE KRNAQAAELA + K +D A G LA E ++ RLRDRLETATGE AS++E RR RERA AAEEEA A A XXXXXXXXXXXXXXX R REA + E A AEAEAGRLH ++RRERD ++ E+AN+TAALVLAREGQE ER RFDRESKRA ALGEELVASEARR+VQEEEI+LVRKQVSRLDAKIEGDMSR KA SDATARATAA AEREANSLRA XXXXXXX SLKAEL A+EA XXXX RAA+AAQ DKDT LSELEHAA+ XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX +R R DLEGRLALA+AE+ E+RAE +RLKRK++ + DRE GT A +G + RT+R GG G +DD F +DG R HR+ G G S LDDPRW FG R RAFS+DS RS VGDA R + G D RVVSRA +RE +ERLRF AARLL VRKEERK A D VA LR+DLRDSESREA+VTARLEESRELSREQTGFVEGVWKERHRL +RLR+SED ARTAAT L GKV DLSAAL+QEQARAKREAEAAVAAEARDAM+ALR QL+DLR+ EGEFQRLR KYEKAKGRIVALEELVAASRRVS QARREF+GALEALKLSQELLL+IHRQRQ+ P D T T P AAPA H Q T ES G + TPS A A GERPTSAAT + STD HV ELAAQASKLRGMSGNVK+LLQLA GEVQGALEDTR+SLG A AAAA GTQT EG+ T+ E LEQ + KA +A EAEK RL GELSAA EL K+Q LL +K +E +VLEA VARLETER EA ASAA N LAEA E LSDT+ RL AALATQ ELR RCAELSLAS AFASEVAKQKEERA+SQERARLA E AER RLEREL ATRAEAR+ID+DVAQVLDALASSEKER RLE EL RQT AR R
Sbjct: 262 LLRLRGDREPSLPTAVSRTASAEPLLLLSPLIRSSTSASVLGSGDGAWESFRRE---HSASGDNSSSSGDAGTAVAGTEDGMPAAXXXXXXAESGPLFELRDALRSREEDLLRLKRDVSVVATSARGFRHLSASLGSGNVERSSSFSFQRSRGHGKDASGANTDDSDLPSGNGSAFRGGGSDGSRAGGAGVDKINEE--AFRPHHG---GAVGGVLLRRQPADSALPGTALSFRTAATPGRPSDNELASSRRLXXXXXXQQGSTATVSKGNAIIAASGSPLVASAHEGLQRMRAVLEQRALEVGRAHDDSKEMANSLNDVSARLRRSERKRNAQAAELA--KXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKSKDATAARXXXXXXXXXXGSLA--ETAQRXXXXXXXXXRLRDRLETATGEXXXXXXXXXXXXXXXXASDKETRRARERAAAAEEEAGAATA----------------XXXXXXXXXXXXXXXXAERAQREAEASAELXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAXAEAEAGRLH--------------SVRRERD-------SSVAEVANLTAALVLAREGQEAERGRFDRESKRAAALGEELVASEARRKVQEEEISLVRKQVSRLDAKIEGDMSRVKANSDATARATAAGAEREANSLRASXXXXXXXXXXXXXXXXXXXXNADASLKAELAAAREAEAELAASEARAKXXXX--------------RAARAAQLDKDTXXXXXXXXXXXXXXXXXXXXXXLSELEHAATSAATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSAF--------------------VRARKDLEGRLALAVAEAAESRAEAQRLKRKLQAVSDREDGGTPAGLGVGFSARTKRRNGGGGTRGKDDDYLFGLDGDRPHREGLQEALRESCGVMERIASALSAAAADRRTSRRPGSDGGSE-LDDPRWAFGRRXXXXXXXXXXXXXXXXXXXXXXX-------XXXXXRAFSVDSNRSGVGDADLRQDGFGDCAESGGEGHDLRRVVSRAEVREVAERLRFEAARLLGVRKEERKAAGDTVASLRRDLRDSESREAEVTARLEESRELSREQTGFVEGVWKERHRLXXXXXXXXXXXERLRASEDAARTAATVLDGKVADLSAALRQEQARAKREAEAAVAAEARDAMEALRQQLDDLRK-----------------------------------------------------------------------------------------EGEFQRLRAKYEKAKGRIVALEELVAASRRVSAQARREFKGALEALKLSQELLLRIHRQRQNN---AVADPTDTATPTTHPAAAPAPKHHHQPDAATRESHP---GAPDE-------TPSAAPADLAATAGERPTSAATSSLSTDAHVHELAAQASKLRGMSGNVKRLLQLAAGEVQGALEDTRDSLGVAGAAAATVGTQTAEGLDGPTRGEVECLEQQVVRMKAEGQAREAEKLRLSGELSAAVGELTKIQGLLEDKMSEAVVLEAHVARLETERNEAREAASAAANDGLAEA---EASLSDTQARLEAALATQRELRSRCAELSLASGAFASEVAKQKEERARSQERARLAT----AELRDLSAKFSRASKTAAADAAAERDRLERELVATRAEARDIDTDVAQVLDALASSEKERRRLEAELHRQTKAARVQR 1812 The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig100.116.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 1
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-lacustris_contig100.116.1 >prot_P-lacustris_contig100.116.1 ID=prot_P-lacustris_contig100.116.1|Name=mRNA_P-lacustris_contig100.116.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=316bp MEGDRNLVPAGDGIGCGASRPSNDSFKDDIQAIGRAVERLREGFASTISSback to top mRNA from alignment at P-lacustris_contig100:235665..248987+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-lacustris_contig100.116.1 ID=mRNA_P-lacustris_contig100.116.1|Name=mRNA_P-lacustris_contig100.116.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=13323bp|location=Sequence derived from alignment at P-lacustris_contig100:235665..248987+ (Pleurocladia lacustris SAG_25_93)back to top Coding sequence (CDS) from alignment at P-lacustris_contig100:235665..248987+ >mRNA_P-lacustris_contig100.116.1 ID=mRNA_P-lacustris_contig100.116.1|Name=mRNA_P-lacustris_contig100.116.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=1896bp|location=Sequence derived from alignment at P-lacustris_contig100:235665..248987+ (Pleurocladia lacustris SAG_25_93)back to top |