mRNA_P-lacustris_contig100.110.1 (mRNA) Pleurocladia lacustris SAG_25_93

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-lacustris_contig100.110.1
Unique NamemRNA_P-lacustris_contig100.110.1
TypemRNA
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Homology
BLAST of mRNA_P-lacustris_contig100.110.1 vs. uniprot
Match: A0A6H5KSG6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSG6_9PHAE)

HSP 1 Score: 78.6 bits (192), Expect = 1.230e-13
Identity = 53/135 (39.26%), Postives = 72/135 (53.33%), Query Frame = 3
Query:  372 GYAPIHVAARHGKTEILQHLLLKGS*-QRHDGRSRDDSSLPCTFLW*PFPAAQALLAAGADVNLRCGQYKDSVMHLAARKGHVETLRAMVRHGADVEAGDVDGNTALDVAAEYNRAAAIDDVLVEAGANIKATNR 773
            G+ P+H+AA  G  +++  +L +G+     D + R                     AAGAD++LR G   +S +  AA  G V+ +RAMVRHG DV A D  G TAL   AE N+A AID  LVEAGA++ A  R
Sbjct:    2 GHTPLHLAAGLGCDDMMPLILQQGAVVDALDNQRRXXXXXXXXXXX--XXXXXXXXAAGADLSLRSGDNNESALETAAINGDVDVVRAMVRHGVDVNARDSQGLTALHAVAESNQAGAID-ALVEAGAHVNARGR 133          
BLAST of mRNA_P-lacustris_contig100.110.1 vs. uniprot
Match: A0A8C4AC72_9TELE (Ankyrin repeat and SOCS box containing 10 n=1 Tax=Denticeps clupeoides TaxID=299321 RepID=A0A8C4AC72_9TELE)

HSP 1 Score: 80.1 bits (196), Expect = 6.420e-13
Identity = 65/202 (32.18%), Postives = 98/202 (48.51%), Query Frame = 3
Query:  381 PIHVAARHGKTEILQHLLLKGS*QR---------HDG--------------------RSRDDSSLP---CTFLW*PFPAAQALLAAGADVNLRCGQYKDSVMHLAARKGHVETLRAMVRHGADVEAGDVDGNTALDVA----------AEYNRAAAIDDVLVEAGANIKATNRDDETPLRRAAFSVRSKAVVALLKHGARVN 860
            P+H+ A  G TE L+HLLL+G+            H+                      + +D  +P   CT +      A+ LL  GADVN R     D+ +H+AAR G +E +   +R+GA++E  + +G T L+ A          A Y++   +  +LV AGAN+K ++ D++TPL  A  SV    V  LL+HGA VN
Sbjct:  119 PLHITASRGFTECLRHLLLRGANVNLAPGGTTALHEACEECQAESXXXXXXXXXXANAADEDGHMPLHLCTNVD-SLECAKYLLQFGADVNGRSLDEDDAPLHVAARHGLLEHVSLYLRYGANLEHRNDEGATPLNAACSQPQEPPSLARYHQ---VCHLLVSAGANVKTSDADNQTPLHMACKSVNPDVVELLLQHGASVN 316          
BLAST of mRNA_P-lacustris_contig100.110.1 vs. uniprot
Match: A0A8C4ADW0_9TELE (Ankyrin repeat and SOCS box containing 10 n=2 Tax=Denticeps clupeoides TaxID=299321 RepID=A0A8C4ADW0_9TELE)

HSP 1 Score: 80.1 bits (196), Expect = 7.180e-13
Identity = 65/202 (32.18%), Postives = 98/202 (48.51%), Query Frame = 3
Query:  381 PIHVAARHGKTEILQHLLLKGS*QR---------HDG--------------------RSRDDSSLP---CTFLW*PFPAAQALLAAGADVNLRCGQYKDSVMHLAARKGHVETLRAMVRHGADVEAGDVDGNTALDVA----------AEYNRAAAIDDVLVEAGANIKATNRDDETPLRRAAFSVRSKAVVALLKHGARVN 860
            P+H+ A  G TE L+HLLL+G+            H+                      + +D  +P   CT +      A+ LL  GADVN R     D+ +H+AAR G +E +   +R+GA++E  + +G T L+ A          A Y++   +  +LV AGAN+K ++ D++TPL  A  SV    V  LL+HGA VN
Sbjct:  167 PLHITASRGFTECLRHLLLRGANVNLAPGGTTALHEACEECQAXXXXXXXXXXXXANAADEDGHMPLHLCTNVD-SLECAKYLLQFGADVNGRSLDEDDAPLHVAARHGLLEHVSLYLRYGANLEHRNDEGATPLNAACSQPQEPPSLARYHQ---VCHLLVSAGANVKTSDADNQTPLHMACKSVNPDVVELLLQHGASVN 364          
BLAST of mRNA_P-lacustris_contig100.110.1 vs. uniprot
Match: D7FHH2_ECTSI (Ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHH2_ECTSI)

HSP 1 Score: 80.5 bits (197), Expect = 7.430e-13
Identity = 56/124 (45.16%), Postives = 74/124 (59.68%), Query Frame = 3
Query:  528 ALLAAGADVNLRCGQYKD-SVMHLAARKGHVETLRAMVRHGADVEAGDVDGNTALDVAAEYNRAAAIDDVLVEAGANIKA---TNRDDETPLRRAAFSVRSKAVVALLKHGARVNPQNSTVAHG 887
            ALL AG D + R G+ K  S + LAAR+GHVE ++A++RHG DV A D +G TAL  AA  +   AI+  L+EAGA I A   T     TPL  A+    SKA ++L+KHGA V+      + G
Sbjct:  160 ALLDAGGDSSFRYGKDKAFSALSLAARRGHVEVMQALIRHGVDVNAPDSNGCTALHSAAMGDTVGAIN-ALIEAGAKINAQGGTYGKRYTPLHMASERGSSKAALSLVKHGADVHRSGKVCSFG 282          
BLAST of mRNA_P-lacustris_contig100.110.1 vs. uniprot
Match: A0A091GA79_9AVES (Ankyrin repeat and SOCS box protein 10 (Fragment) n=2 Tax=Cuculus canorus TaxID=55661 RepID=A0A091GA79_9AVES)

HSP 1 Score: 77.0 bits (188), Expect = 6.060e-12
Identity = 62/213 (29.11%), Postives = 96/213 (45.07%), Query Frame = 3
Query:  381 PIHVAARHGKTEILQHLLLKG-----------------------------S*QRHDGRSRDDSSLPCTFLW*P--FPAAQALLAAGADVNLRCGQYKDSVMHLAARKGHVETLRAMVRHGADVEAGDVDGNTALDVAA-------EYNRAAAIDDVLVEAGANIKATNRDDETPLRRAAFSVRSKAVVALLKHGARVNPQN---STVAHGSIQ 896
            P+H+ A  G T+ LQ LLL+G                             S         +D   P      P      Q LL  GA VN R     D+ +H+AAR G V+ ++ ++RHGA++EA + +G T L+ A        + +R   +  +LVE+GA++ A +RD + PL  A+ +  ++    LL  GA VN  N   +T  H ++Q
Sbjct:   82 PLHITASRGYTDCLQLLLLRGAAVDFAPGGKTAXXXXXXXXXXXXXXXXXSCGADPEAISEDGYRPLHLCKSPDSIRCVQQLLQHGASVNSRTDTEDDTALHVAARHGLVDHVQLLLRHGAELEAKNNEGQTPLNAACAQPHQPQDMDRFYLVCRLLVESGASVNAADRDRQHPLHLASKNANAQIAELLLARGANVNVMNYSGNTALHNALQ 294          
BLAST of mRNA_P-lacustris_contig100.110.1 vs. uniprot
Match: A0A6H5JFR1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFR1_9PHAE)

HSP 1 Score: 75.1 bits (183), Expect = 8.230e-12
Identity = 46/112 (41.07%), Postives = 68/112 (60.71%), Query Frame = 3
Query:  384 IHVAARHGKTEILQHLLLKG---S*QRHDGRSRDDSSLPCT-----FLW*PFPAAQALLAAGADVNLRCGQYKDSVMHLAARKGHVETLRAMVRHGADVEAGDVDGNTALDV 695
            +H A R+G  E++ +LL  G   S +   G +    +  CT      L+    +A+AL+AAGA++N+RCG  K +V+ LAA KG V+ LRA+V++GADV A D D + AL V
Sbjct:    5 LHAAVRYGYAEVVTNLLEHGACVSIKDARGSTPLQVAAECTPLFGALLFGHLTSARALMAAGAEINVRCGLSKRTVLSLAAEKGDVDILRALVKNGADVTAVDNDRDMALHV 116          
BLAST of mRNA_P-lacustris_contig100.110.1 vs. uniprot
Match: D7FKL4_ECTSI (Ankyrin repeat protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FKL4_ECTSI)

HSP 1 Score: 70.9 bits (172), Expect = 5.750e-10
Identity = 45/110 (40.91%), Postives = 66/110 (60.00%), Query Frame = 3
Query:  546 ADVNLRCGQYKDSVMHLAARKGHVETLRAMVRHGADVEAGDVDGNTALDVAAEYNRAAAIDDVLVEAGANIKATNRDDETPLRRAAFS-VRSKA--VVALLKHGARVNPQ 866
            AD+N R G  + S + + A +GHV+ +R ++ HGADV+A +  G  AL  A   N+  A+D VL+ AGAN ++ +    T L  AA +  R++A  +  LLKHGA VN Q
Sbjct:  150 ADINRRYGDREISALDIGAGEGHVDFIRTLIEHGADVDATNYGGVAALHHATANNKVEAMD-VLLRAGANARSMSESGHTVLHMAAITRTRTEAATLAVLLKHGADVNAQ 258          
BLAST of mRNA_P-lacustris_contig100.110.1 vs. uniprot
Match: D7G744_ECTSI (Ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G744_ECTSI)

HSP 1 Score: 68.2 bits (165), Expect = 7.150e-9
Identity = 52/119 (43.70%), Postives = 70/119 (58.82%), Query Frame = 3
Query:  549 DVNLRCGQYKD-SVMHLAARKGHVETLRAMVRHGADVEAGDVDGNTALDV----------AAEYNRAAAIDDVLVEAGANIKATNR--DD--ETPLRRAAFSVRSKAVVALLKHGARVN 860
            D +LRCG+ +  S + LAAR GHVE ++A++RHGADV A D +G TAL            AA  ++  AID  L+EAGANI       DD   TPL  A+    S+A ++L+KH A V+
Sbjct:  115 DPSLRCGKDEAFSTLGLAARGGHVEVMQALIRHGADVNAPDSNGCTALHTXXXXXXXXXSAAIGDKVGAID-TLIEAGANINVQGGKYDDARSTPLHMASKKGSSEAALSLVKHRADVH 232          
BLAST of mRNA_P-lacustris_contig100.110.1 vs. uniprot
Match: L8GQ59_ACACA (MYND finger domain containing protein n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GQ59_ACACA)

HSP 1 Score: 63.9 bits (154), Expect = 1.760e-7
Identity = 53/160 (33.12%), Postives = 76/160 (47.50%), Query Frame = 3
Query:  375 YAPIHVAARHGKTEILQHLLLKGS*Q---RHDGRSRDDSSLPCTFLW*PFPAAQALLAAGADVNL--------RCG---------QYKDSVMHLAARKGHVETLRAMVR--HGADVEAGDVDGNTALDVAAEYNRAAAIDDVLVEAGANIKATNRDDETP 788
            + P+H AA HG   I+Q L  K       R+DG++ D + L   FL        AL+    DV +        R G         Q K+S++HLAA    V+ LR ++   HGADV+A D +GNTAL +A +     A+  +   AG + +A N    TP
Sbjct:  338 HTPLHAAASHGHLLIVQMLYQKADKSKNVRYDGQADDGAVLSPAFL--------ALMNEHYDVAMWLVRAEDKRLGKESDPQAVRQLKESLLHLAAMLDSVDVLRLLIEGVHGADVDARDSEGNTALHLAYQVGNDDAVAYLRDRAGCDAEAVNHRGLTP 489          
BLAST of mRNA_P-lacustris_contig100.110.1 vs. uniprot
Match: D8LL12_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LL12_ECTSI)

HSP 1 Score: 62.0 bits (149), Expect = 4.450e-7
Identity = 30/47 (63.83%), Postives = 37/47 (78.72%), Query Frame = 3
Query:  546 ADVNLRCGQYKDSVMHLAARKGHVETLRAMVRHGADVEAGDVDGNTA 686
            ADVN+RCG  K +V+ LAA KGHV+ LRA+V+HGADV A D D +TA
Sbjct:  166 ADVNVRCGLLKRTVLSLAAEKGHVDILRALVKHGADVTAVDNDRDTA 212          
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig100.110.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KSG6_9PHAE1.230e-1339.26Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A8C4AC72_9TELE6.420e-1332.18Ankyrin repeat and SOCS box containing 10 n=1 Tax=... [more]
A0A8C4ADW0_9TELE7.180e-1332.18Ankyrin repeat and SOCS box containing 10 n=2 Tax=... [more]
D7FHH2_ECTSI7.430e-1345.16Ankyrin repeat protein n=1 Tax=Ectocarpus siliculo... [more]
A0A091GA79_9AVES6.060e-1229.11Ankyrin repeat and SOCS box protein 10 (Fragment) ... [more]
A0A6H5JFR1_9PHAE8.230e-1241.07Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FKL4_ECTSI5.750e-1040.91Ankyrin repeat protein n=2 Tax=Ectocarpus TaxID=28... [more]
D7G744_ECTSI7.150e-943.70Ankyrin repeat protein n=1 Tax=Ectocarpus siliculo... [more]
L8GQ59_ACACA1.760e-733.13MYND finger domain containing protein n=1 Tax=Acan... [more]
D8LL12_ECTSI4.450e-763.83Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig100contigP-lacustris_contig100:163732..164768 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score73.2
Seed ortholog evalue8.3e-11
Seed eggNOG ortholog2880.D7G751
Hectar predicted targeting categoryother localisation
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG4177@2759
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size1037
Cds size315
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig100.110.1prot_P-lacustris_contig100.110.1Pleurocladia lacustris SAG_25_93polypeptideP-lacustris_contig100 164319..164633 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815267.2200434-UTR-P-lacustris_contig100:163731..1643181622815267.2200434-UTR-P-lacustris_contig100:163731..164318Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig100 163732..164318 +
1693493439.1838858-UTR-P-lacustris_contig100:163731..1643181693493439.1838858-UTR-P-lacustris_contig100:163731..164318Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig100 163732..164318 +
1622815267.2451804-UTR-P-lacustris_contig100:164633..1647681622815267.2451804-UTR-P-lacustris_contig100:164633..164768Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig100 164634..164768 +
1693493439.2008488-UTR-P-lacustris_contig100:164633..1647681693493439.2008488-UTR-P-lacustris_contig100:164633..164768Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig100 164634..164768 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815267.2323334-CDS-P-lacustris_contig100:164318..1646331622815267.2323334-CDS-P-lacustris_contig100:164318..164633Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig100 164319..164633 +
1693493439.193301-CDS-P-lacustris_contig100:164318..1646331693493439.193301-CDS-P-lacustris_contig100:164318..164633Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig100 164319..164633 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-lacustris_contig100.110.1

>prot_P-lacustris_contig100.110.1 ID=prot_P-lacustris_contig100.110.1|Name=mRNA_P-lacustris_contig100.110.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=105bp
MHLAARKGHVETLRAMVRHGADVEAGDVDGNTALDVAAEYNRAAAIDDVL
VEAGANIKATNRDDETPLRRAAFSVRSKAVVALLKHGARVNPQNSTVAHG
SIQR*
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mRNA from alignment at P-lacustris_contig100:163732..164768+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-lacustris_contig100.110.1 ID=mRNA_P-lacustris_contig100.110.1|Name=mRNA_P-lacustris_contig100.110.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=1037bp|location=Sequence derived from alignment at P-lacustris_contig100:163732..164768+ (Pleurocladia lacustris SAG_25_93)
CTATCGCTTGGAGACATCGCTACTGTGCTACTGCTGTTCTTTTCCTTCGA TAATGGTCCTCGTCATACGACGTGCTATCACGGCTGCTGCATTACCGCAG ATCGATGACCAACAGCGCTATTCTGTTAAAGGTACCAGCAGTAGGCTACC GACAGCAGCATCTAATACAGCGAGCGAGAGCAGGCAGAGGCACGGTGGGA GCGATATGACCAACAAGCATGCACGAGAAGTGCTTCAAGGAGCAGAGAAG CTGGTGGGGGCAGGGGAAGAGATTGAGATGCACTTCACGAGCCCGTTCAA GCCGGTCTAGAGAAGTAGTCGACTACTACCTCCTGGCGCGTGCAGTATCG ATTAGCGCCGAGAACACGCGAGGCTATGCCCCTATCCACGTTGCTGCCCG ACATGGGAAAACGGAGATATTGCAGCACCTATTGCTTAAGGGGAGTTGAC AAAGGCATGATGGACGATCGCGAGACGACTCCTCTCTACCTTGCACCTTT CTTTGGTAGCCTTTTCCTGCCGCACAAGCTCTCTTGGCTGCCGGTGCCGA CGTCAACCTTCGATGTGGACAGTACAAAGATTCGGTGATGCACTTGGCGG CTCGAAAGGGGCATGTAGAAACCTTGAGGGCGATGGTCAGGCACGGGGCG GACGTGGAAGCTGGTGATGTCGATGGCAACACCGCCCTTGATGTTGCTGC GGAATACAACAGGGCGGCGGCGATCGATGATGTGCTCGTCGAGGCTGGGG CCAACATCAAAGCAACAAATCGTGACGACGAAACTCCACTTCGTCGTGCG GCTTTCTCTGTCAGGTCCAAAGCCGTGGTCGCCCTCTTGAAACACGGTGC GAGGGTCAATCCCCAGAACAGTACTGTTGCGCATGGCAGCATACAAAGGT GAGACGCAAGGAGCCGCGGAGGTTGTGGACCTGCTGCTGAGGTGAGGTGC GGACGAGACACTTGTTGTTGCGAGTGTTGCGAGATCGCGGCAAGTGGGAT CGGGAATGGCGCCGATGAAGAAAGCCGCCTTGCTGAG
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Coding sequence (CDS) from alignment at P-lacustris_contig100:163732..164768+

>mRNA_P-lacustris_contig100.110.1 ID=mRNA_P-lacustris_contig100.110.1|Name=mRNA_P-lacustris_contig100.110.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=630bp|location=Sequence derived from alignment at P-lacustris_contig100:163732..164768+ (Pleurocladia lacustris SAG_25_93)
ATGCACTTGGCGGCTCGAAAGGGGCATGTAGAAACCTTGAGGGCGATGGT
CAGGCACGGGGCGGACGTGGAAGCTGGTGATGTCGATGGCAACACCGCCC
TTGATGTTGCTGCGGAATACAACAGGGCGGCGGCGATCGATGATGTGCTC
GTCGAGGCTGGGGCCAACATCAAAGCAACAAATCGTGACGACGAAACTCC
ACTTCGTCGTGCGGCTTTCTCTGTCAGGTCCAAAGCCGTGGTCGCCCTCT
TGAAACACGGTGCGAGGGTCAATCCCCAGAACAGTACTGTTGCGCATGGC
AGCATACAAAGGTGAATGCACTTGGCGGCTCGAAAGGGGCATGTAGAAAC
CTTGAGGGCGATGGTCAGGCACGGGGCGGACGTGGAAGCTGGTGATGTCG
ATGGCAACACCGCCCTTGATGTTGCTGCGGAATACAACAGGGCGGCGGCG
ATCGATGATGTGCTCGTCGAGGCTGGGGCCAACATCAAAGCAACAAATCG
TGACGACGAAACTCCACTTCGTCGTGCGGCTTTCTCTGTCAGGTCCAAAG
CCGTGGTCGCCCTCTTGAAACACGGTGCGAGGGTCAATCCCCAGAACAGT
ACTGTTGCGCATGGCAGCATACAAAGGTGA
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