mRNA_P-lacustris_contig100.109.1 (mRNA) Pleurocladia lacustris SAG_25_93

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-lacustris_contig100.109.1
Unique NamemRNA_P-lacustris_contig100.109.1
TypemRNA
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig100.109.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig100contigP-lacustris_contig100:158086..163385 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-27_000040.1
Exons4
Model size1272
Cds size978
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig100.109.1prot_P-lacustris_contig100.109.1Pleurocladia lacustris SAG_25_93polypeptideP-lacustris_contig100 158380..163385 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815267.1341863-UTR-P-lacustris_contig100:158085..1583791622815267.1341863-UTR-P-lacustris_contig100:158085..158379Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig100 158086..158379 -
1693493439.129797-UTR-P-lacustris_contig100:158085..1583791693493439.129797-UTR-P-lacustris_contig100:158085..158379Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig100 158086..158379 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815267.1464136-CDS-P-lacustris_contig100:158379..1585011622815267.1464136-CDS-P-lacustris_contig100:158379..158501Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig100 158380..158501 -
1693493439.1382532-CDS-P-lacustris_contig100:158379..1585011693493439.1382532-CDS-P-lacustris_contig100:158379..158501Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig100 158380..158501 -
1622815267.1600432-CDS-P-lacustris_contig100:158880..1595831622815267.1600432-CDS-P-lacustris_contig100:158880..159583Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig100 158881..159583 -
1693493439.1499422-CDS-P-lacustris_contig100:158880..1595831693493439.1499422-CDS-P-lacustris_contig100:158880..159583Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig100 158881..159583 -
1622815267.1762862-CDS-P-lacustris_contig100:163079..1631571622815267.1762862-CDS-P-lacustris_contig100:163079..163157Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig100 163080..163157 -
1693493439.1609206-CDS-P-lacustris_contig100:163079..1631571693493439.1609206-CDS-P-lacustris_contig100:163079..163157Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig100 163080..163157 -
1622815267.186198-CDS-P-lacustris_contig100:163310..1633851622815267.186198-CDS-P-lacustris_contig100:163310..163385Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig100 163311..163385 -
1693493439.172742-CDS-P-lacustris_contig100:163310..1633851693493439.172742-CDS-P-lacustris_contig100:163310..163385Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig100 163311..163385 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-lacustris_contig100.109.1

>prot_P-lacustris_contig100.109.1 ID=prot_P-lacustris_contig100.109.1|Name=mRNA_P-lacustris_contig100.109.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=326bp
MHHRTVTCRMCRQKFFPASLKFHEKVCAKRQEHVELSCDHCKERFPCTVL
QVHKKKCERNQRRTRTTQGGGIRSQDLTMPRHQGEIRGAGGDTSSRHPHH
FAGPLIARKHRSSLLRSRSSSCDDGGSGEPPLPDLFFDQCHSSDTNATNI
GGAGGKAVVVTSSDGRIACSNCMRWFSPDRVGVHQEICKRVNTASVRGSK
ISKRGSITTKNSQISTSASSAAPFSRRRRSSYPIFGGGHAGAIAHRGGGR
SVGRKQGNITNHPVVSCPGDSLVCTDHMVLETLGKKIDQPKIDTTTATTT
ATHHPCFRGTIRNGMSRRNRSQPRS*
back to top

mRNA from alignment at P-lacustris_contig100:158086..163385-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-lacustris_contig100.109.1 ID=mRNA_P-lacustris_contig100.109.1|Name=mRNA_P-lacustris_contig100.109.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=5300bp|location=Sequence derived from alignment at P-lacustris_contig100:158086..163385- (Pleurocladia lacustris SAG_25_93)
ATGCATCACAGAACGGTCACGTGCCGCATGTGCCGGCAGAAGTTCTTCCC
AGCCTCTCTCAAGTTTCACGAAAAGGTGCGACAGTACTTGTAGGGGTTAT
ATATAGCACTGGTAGCCAGAGGCAAAGTTTGTGTGAGCAAAGCACTTGTC
GCTTCGCTTCTTCACAAGCGGAATGAGTTGGCGGAGTGCCTGCTATGAGG
AGTTTATTTGCCACATTTGTTTCGGCAGGTGTGTGCGAAGAGACAGGAGC
ATGTCGAGCTATCCTGCGACCACTGCAAGGAACGGTTTCCATGCACAGTA
CTTCAGGTCTGTATGTAATTTATCGTGTCGGTGTGTGAGCACCTTGCGAC
TGCTTTAGCCATGGAGCCTCTCAGTCCCAGTGATAGTGGTGTCGACTGCT
CGAAAAGTTCTGATTACAGTCATGGCGCCGGTTTAATAGAGGATCGGGCA
GAGGCCCGACTTTTCTCTTGAACCCACTTTCCTCCTAAACCGGTCTAAGA
GAATACTCTCAAGCTCGTCATTCTCTTAGACCGGATCCAAATTAAACTAG
GCTGTTCAAGGGCGATGCCCTTGCCAGACTGCGTGTGAGCTCATGGATGA
CACATAAATCATGTTGAGAACGTACGCTGTGTGTCTCCAGGCTTGTGTTG
GGTGAACAGACAAAACGAAATAGAAAATGCATTATTGTATCCGCCAAAAT
TCGACAAGTGAAGAACGATTGACCACCTCAGCACTCTCGCCTATCTGTCT
GCAGCGTTACATGTAGTCTCGAATGACTGTCTGCCTTGCTTCCCTCGACC
CGTAGTCGCTCGTCCAAGATATGGTAGGACACGTCCTGTATGCCGCACTT
CTCAGCAACATCCTCGAGTGCACAACCAATGTTCAGCTACCCCCGAGTAC
GGCGGCGGACGCGGGGCTGCTGCCCCAGTACGGGCCCGTTTCGCCTTGTT
CGGACTCGTCGTCCTCATCGACATCCGAGACAGGATCCATTTGCGACGCG
CCCTCATCAAAAATATCATCTGCCATGTCTGATACGATAGCTTGGGCTAC
TTCCTCCTTCTCCTCTACAGTCACCCATGTTTCTCGCGGCCATGGAACCC
GAGTTTGGCGCAGCGCCCAGCGAAAGCCCTAGACCAGCGAGTGCTAAGCT
GAGGTCATCGACACTACCACGCTTCGCTCCGACACTTAGACGCGAAATCA
AACTCGTCAGCTCGTCCACATTCTCTGTATTGCCGGTGGCTTTCGTGCGG
CCAACCTCCTGGATGAGTTGCGCGCGCATAGCGGGAGAGAGAATGTCTGC
TTTCAACCAGCACCTGCGACAGGGTGAGCAGGGCGGACAGAAGGCATCGC
CAAGCACAGTCGGAACCGCCGTGAAGTCCTCGGTGAACCCAGGAGGCGCA
CAAAAAATAATGAAACAATGAGGCCCCCGGGATAGCACACGCGAAGTGTA
CCAAAATAAAAATGGGCGACGCATTTTTGCGGTACTGGTTGTCGTTTCAT
TTGGAGAGAAACACGCCCGAAAAACAGTCGAGATGATACCAATGGATCGA
TCACATACATGAAAGCTAGAAAGTACAGGCTCAGGTAGCGTGCACACGTC
TTGATAGTTTCCGGTGAAATCTCATCCCACGCGGCCTTGCAAAGCTCAGC
GGCGTCTTCCCTCCGCCAGCACACGGCAACCCTGGACCGCTTTCCGCTTC
TTCGCTTCCTCCCGTAGCTGGAGCGCCGAGTCCATCGTGTCTGCGCGGAT
GTGGAGCAGCCTCGTCCTGTATCGACTCTTCAGGGCTGCAACGATGCCGG
CATCCGCAGGCTGGTGTTTCGCGGTGCAGTTCGGCGGTAGCTCGAGAATT
TTCACGTGCCCCCGGGGGTCTACCAAGTTTGCGTGGCTTTTGTGGCTGTT
CGCGACTAGGACGTCTTTGCTGGTGACTTAACGTACGTGCAGAAGAAGCA
CCTTGTTCCACCACAGGCGGAAGGCGCGCTCGTGAGACCACGCGTTGAAG
TACTCGATTGGACACTTCCTGAACCTGAAGCACCGGGGGTCTTTGGCGTG
GCCGTGACAGCGGCACTTTTCACCCGGTGGCATCCGTCGCCACATACAGC
GTGACGCGCTCCTTCGCCGCCATACCTTTCACTCCCCGCACCGACCACTT
CTTCTCGCCAGGCGCTAAGTAAGTCGTGGTAGGCAGAAGCCTGTACTGCA
GCGCCGTCTCATCACAGTTGATGATGCACTCCGGCTCGTAATTGGCAATC
TTCTCGCGGACGATGCCGATTTGGTCCGCGATGGCTTCATCGTCGACGCT
TCCTGCCTGGCCGCAGCTTGATGGACTTCATGCCGTTTCGCTTGATGACT
GTTTTTGCCCACGAGTCAGAAGCTCAAAAGGCACCGTACCGCTCGCGTTC
TTCACGTGTTGATGCTTGTGCCTCGAAAGTGATGATGCTGTTCCGATCCG
CGCTCCCCTAGCCTGCGCGATCAGTTCCAACACCATATTTTCCAGCTGGG
GACCCGAAGAAGACAACAGCGATCAGATGTTGGGGCAACAGCAGTCGGCA
GAGAGGATGCATGCACGAATGGTCGAGGATAGCAACGATTATGTAGGGCC
GTAAAATGAACTAGCAGCGCTCAGCGGACCAAATCATTATTCACACCAGG
TATAATTTATCACGCGCTGCTGGACATAATTCCGCATGTTCACGTACAAT
ATATAAGTCCGGGTATTAACGAACGCTCCGACCAGCAGCCACACAAACTC
TCTAACTACCAAGCTACCGCATGCCACACATATGACATTCCCTTGTGGGG
CCCTTTACTGTCTCGTTGTATGCATACTGTACATGCACTGACAGAGAACT
GGAGAAAAAAACATGGTCCCCGTTTCTTTTTCTCGGCCTAGGAGCTACGC
ATTATTTTCAAGAACTACATCTACATGGCATGCTACATGCGACTGTATGC
ACAGCCATCGTGCGCAGGAGGTCGAGGGCTTGCCCTTTTGTCCGCAAGGG
CGACGCGGGTGCGTTTGGCTCTCCCGCCTTTTTTTTGCGACAGCGTTGCC
AAGTTGCAAGCCGCTACGTGTCCCCGCAGAGCCCGTGAGGTTGCTCTCTG
GGCGTTTCTCAGGCTTCCCCTCTGCAGTTTGCGAGGTTGAAGTCTTGCGT
TTGCCGGAATCTGCACAGCTGTGGCAAGCGCGATGCATCTCGCTGTCGCC
ATGCGGGTCGACCACTCCACACGTTCCGTGGAGGTAGCCTCCGCAGACCC
TGCATTTGTGCCTCGTGAAGTCTGGCGCGCTTGGCATATGATCGGGGACG
CACAAGCAGCGGCTACCCGCTGCACAGGGCATGTTGTCCGCAGCTCCGTC
GCGTGTGTGTGATGCGTGATCCGGGGTTCGATTTAAGAAAGTACCGAAAA
AATATTACTTTTTCTTAAATCGTGTTTTGGCTGGGCGGAGCCAATTTGAC
TCTCTTATATCCGGGTTTCTCAGATTCTCTTAAACCGGAGCCATGACTGT
ATTGTTAATTACGTTATTGTATCTGCCCTGCTCCTCTTCTCGCACGTAGA
GCATGGGTGTCAATGCTTGTGGGATCCTCCCCACTTTCTTCCGTGTAAGG
TACACTGCCGCACGACCTTGAGGCACGGCTCCGATCGTTCGATATAGTAT
TCTCCTCAAGCATGTGCCGCAACTGAATACCCCGTGGTCTACTCATCCAA
ACTGGCTTGCTCAAACCCAAGTGCTTCTTTTCTAACAGTTAATCCCAACT
CCGTTTCCGGCTTGCACCACACCCACATATTACGTCGATTTCTTGGCCCC
AGGTGCACAAGAAAAAGTGCGAACGAAACCAAAGGCGAACACGCACCACG
CAAGGCGGGGGTATACGATCGCAGGATCTCACAATGCCGCGGCATCAGGG
CGAGATACGTGGGGCTGGTGGCGACACATCGTCGCGACATCCCCATCACT
TTGCGGGCCCATTAATAGCGAGAAAACACCGCAGCAGCCTTCTTCGATCA
AGAAGTTCGTCTTGTGACGACGGGGGAAGCGGTGAGCCACCGCTGCCGGA
CCTGTTTTTTGACCAGTGCCACAGCAGCGATACCAACGCCACAAATATCG
GAGGCGCTGGAGGTAAGGCGGTCGTCGTGACTTCAAGTGACGGGCGCATA
GCTTGCTCGAACTGCATGCGTTGGTTTTCCCCCGATAGGGTGGGCGTACA
TCAGGAGATATGCAAGCGGGTCAACACAGCATCAGTTCGCGGAAGCAAAA
TCAGTAAAAGAGGAAGCATCACGACGAAGAACAGCCAGATATCTACATCA
GCATCTTCCGCTGCCCCCTTCTCCAGAAGACGACGATCGAGCTACCCCAT
TTTCGGTGGCGGTCACGCGGGGGCGATAGCACACCGAGGCGGCGGGCGCT
CGGTGGGTCGAAAGCAAGGCAACATCACGAATCACCCTGTTGTCAGTTGT
CCTGGGGACTCGCTGGTATGTACGGATCACATGGTTCTCGAAACGCTAGG
CAAGAGTGGATAAGTATTGTATGTTTTCGATCATCATGTGTGCCCGTGGG
AGGATGCTGGGTTTCAAGCCCGGTCAACTTCAGCTTAATGCATGTCTGAG
GTAAGGTGCATGGAGTCCATTTCTGTACGCCAGAGATGCGCGTCATGTAT
GAGCTTCTGTATCTCTCTCGTGCCCCCGGACGGACTTGTACCTCCTGTTC
CTATTGAATTTTCGCGTTGTGCGGCCGTGATTGCTCTCTACGACGAAAAC
TGTTTGTCGTTCTTCAAATTATCACAAAACCAAAGACTAAAAGAGACGTG
AACCCACTGTTACTCTTTGCTCGAGATCCCCCTTGACTTTTTTTAGTGTT
TGAACCACCACACCGTTTCAGCAGCCTACTAGAGAGATCGATCAGCCGAA
AATCGATACCACCACCGCCACAACAACAGCAACCCATCATCCATGCTTCC
GGGGCACTATCAGGAATGGAATGTCGAGACGAAATAGGTCACAGCCTCGG
TCATGAGAAGTTGTGGTATCCGCACATGGACGATGGGCCACAGGGAGACG
CTCGAAAACACCAACATCGGAGAAATGAACGACAGCAAAGAAAACGAGAC
ATTCCCGCCTCGGGTCTTCCAGCGAACGCTTCTACTGCCTCGTCGAGCAC
GTGCCCCATCAACATCACGCACGTCGCCCTTCCAGTGCTCGAGGCTGGGC
TTCGTGCTGCGATGCGGCGGCGCCGGGTTCACGAGCTCAGATGGGGCTGT
TTGCAGGACGCGTCGTAAAAATGAGTTGTTCCCCTGTTCGGCTGAGACGT
back to top

Coding sequence (CDS) from alignment at P-lacustris_contig100:158086..163385-

>mRNA_P-lacustris_contig100.109.1 ID=mRNA_P-lacustris_contig100.109.1|Name=mRNA_P-lacustris_contig100.109.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=1956bp|location=Sequence derived from alignment at P-lacustris_contig100:158086..163385- (Pleurocladia lacustris SAG_25_93)
ATGCATCACAGAACGGTCACGTGCCGCATGTGCCGGCAGAAGTTCTTCCC
AGCCTCTCTCAAGTTTCACGAAAAGATGCATCACAGAACGGTCACGTGCC
GCATGTGCCGGCAGAAGTTCTTCCCAGCCTCTCTCAAGTTTCACGAAAAG
GTGTGTGCGAAGAGACAGGAGCATGTCGAGCTATCCTGCGACCACTGCAA
GGAACGGTTTCCATGCACAGTACTTCAGGTGTGTGCGAAGAGACAGGAGC
ATGTCGAGCTATCCTGCGACCACTGCAAGGAACGGTTTCCATGCACAGTA
CTTCAGGTGCACAAGAAAAAGTGCGAACGAAACCAAAGGCGAACACGCAC
CACGCAAGGCGGGGGTATACGATCGCAGGATCTCACAATGCCGCGGCATC
AGGGCGAGATACGTGGGGCTGGTGGCGACACATCGTCGCGACATCCCCAT
CACTTTGCGGGCCCATTAATAGCGAGAAAACACCGCAGCAGCCTTCTTCG
ATCAAGAAGTTCGTCTTGTGACGACGGGGGAAGCGGTGAGCCACCGCTGC
CGGACCTGTTTTTTGACCAGTGCCACAGCAGCGATACCAACGCCACAAAT
ATCGGAGGCGCTGGAGGTAAGGCGGTCGTCGTGACTTCAAGTGACGGGCG
CATAGCTTGCTCGAACTGCATGCGTTGGTTTTCCCCCGATAGGGTGGGCG
TACATCAGGAGATATGCAAGCGGGTCAACACAGCATCAGTTCGCGGAAGC
AAAATCAGTAAAAGAGGAAGCATCACGACGAAGAACAGCCAGATATCTAC
ATCAGCATCTTCCGCTGCCCCCTTCTCCAGAAGACGACGATCGAGCTACC
CCATTTTCGGTGGCGGTCACGCGGGGGCGATAGCACACCGAGGCGGCGGG
CGCTCGGTGGGTCGAAAGCAAGGCAACATCACGAATCACCCTGTTGTCAG
TTGTCCTGGGGACTCGCTGGTATGTACGGATCACATGGTTCTCGAAACGC
TAGGCAAGAGTGCACAAGAAAAAGTGCGAACGAAACCAAAGGCGAACACG
CACCACGCAAGGCGGGGGTATACGATCGCAGGATCTCACAATGCCGCGGC
ATCAGGGCGAGATACGTGGGGCTGGTGGCGACACATCGTCGCGACATCCC
CATCACTTTGCGGGCCCATTAATAGCGAGAAAACACCGCAGCAGCCTTCT
TCGATCAAGAAGTTCGTCTTGTGACGACGGGGGAAGCGGTGAGCCACCGC
TGCCGGACCTGTTTTTTGACCAGTGCCACAGCAGCGATACCAACGCCACA
AATATCGGAGGCGCTGGAGGTAAGGCGGTCGTCGTGACTTCAAGTGACGG
GCGCATAGCTTGCTCGAACTGCATGCGTTGGTTTTCCCCCGATAGGGTGG
GCGTACATCAGGAGATATGCAAGCGGGTCAACACAGCATCAGTTCGCGGA
AGCAAAATCAGTAAAAGAGGAAGCATCACGACGAAGAACAGCCAGATATC
TACATCAGCATCTTCCGCTGCCCCCTTCTCCAGAAGACGACGATCGAGCT
ACCCCATTTTCGGTGGCGGTCACGCGGGGGCGATAGCACACCGAGGCGGC
GGGCGCTCGGTGGGTCGAAAGCAAGGCAACATCACGAATCACCCTGTTGT
CAGTTGTCCTGGGGACTCGCTGGTATGTACGGATCACATGGTTCTCGAAA
CGCTAGGCAAGAAGATCGATCAGCCGAAAATCGATACCACCACCGCCACA
ACAACAGCAACCCATCATCCATGCTTCCGGGGCACTATCAGGAATGGAAT
GTCGAGACGAAATAGGTCACAGCCTCGGTCATGAAGATCGATCAGCCGAA
AATCGATACCACCACCGCCACAACAACAGCAACCCATCATCCATGCTTCC
GGGGCACTATCAGGAATGGAATGTCGAGACGAAATAGGTCACAGCCTCGG
TCATGA
back to top