mRNA_P-lacustris_contig100.107.1 (mRNA) Pleurocladia lacustris SAG_25_93

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-lacustris_contig100.107.1
Unique NamemRNA_P-lacustris_contig100.107.1
TypemRNA
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Homology
BLAST of mRNA_P-lacustris_contig100.107.1 vs. uniprot
Match: D7FIK1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIK1_ECTSI)

HSP 1 Score: 388 bits (996), Expect = 1.150e-127
Identity = 213/253 (84.19%), Postives = 230/253 (90.91%), Query Frame = 2
Query:  152 YVVLDYTVPGLGFVAGVLKSFLEWVEENPGLGALAFALVYIFTTVCFIPGSLLTLGAGLVFGRALGTGWGVLVGTVSVMVGATIGAILAFLLGRFVLQEQAKGLFNKFKILKAVNRAIKVQGLKLVILLRLSPVVPFSAFNYVMGVTDVFFKDYAIGCVGFLPGTTAYVFIGTTASGLLGDDDEQEXSESNSS-GTVQLIVGIVGGIATVIAVVLISIYAKRALNKVLEEDRIAQEALEREGGLEGGVSGNGG 907
            YV+LDYTVPGLGFVA  L SFLEWVE+NPGLGALAFALVY+FTTVCFIPGSLLTLGAGLVFGRALGTG G+LVG+++V+ GAT+G+ILAFLLGRFVLQEQA+GLFNKFK+LKAVNRAIK QGLKLVILLRLSPVVPFSAFNYVMGVTDVFF+DYAIGCVGF+PGT A+VFIGTTASGLLGDD E+ X       GTVQLIVGIVGGIATVIAVVLISIYAKRALNKVLEEDR+ QEALE   GLE   SGNGG
Sbjct:   57 YVILDYTVPGLGFVADTLTSFLEWVEDNPGLGALAFALVYVFTTVCFIPGSLLTLGAGLVFGRALGTGLGILVGSLAVLAGATVGSILAFLLGRFVLQEQAQGLFNKFKVLKAVNRAIKSQGLKLVILLRLSPVVPFSAFNYVMGVTDVFFRDYAIGCVGFIPGTVAFVFIGTTASGLLGDDSEEXXXXXXXXXGTVQLIVGIVGGIATVIAVVLISIYAKRALNKVLEEDRVEQEALEM--GLE---SGNGG 304          
BLAST of mRNA_P-lacustris_contig100.107.1 vs. uniprot
Match: A0A7S2Y1P9_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y1P9_9STRA)

HSP 1 Score: 274 bits (701), Expect = 8.920e-84
Identity = 150/243 (61.73%), Postives = 192/243 (79.01%), Query Frame = 2
Query:  143 IVVYVVLDYTVPGLGFVAGVLKSFLEWVEENPGLGALAFALVYIFTTVCFIPGSLLTLGAGLVFGRALGTGWGVLVGTVSVMVGATIGAILAFLLGRFVLQEQAKGLFNKFKILKAVNRAIKVQGLKLVILLRLSPVVPFSAFNYVMGVTDVFFKDYAIGCVGFLPGTTAYVFIGTTASGL---LGDDDEQEXSESNSSG--------TVQLIVGIVGGIATVIAVVLISIYAKRALNKVLEE 838
            +++YV++DY+VP LG V  VL  FL WVE+NP  G  AFA VY+F TV FIPGSLLTLGAGLVFGRALG G GV +G+ +V++GA+IGAI+AF+LGR+VLQ+ A+ LFNKFKI++AV++AI+ QGLKL +LLRLSPVVPF+AFNY+MG+T +  KDY IGC+G +PGT AYVFIG++ASG+    G+D+EQ  +  ++ G        TV LIV IVG IATVIAV LIS YAK+ALN++L E
Sbjct:   36 LIIYVIVDYSVPSLGNVNIVLSDFLAWVEDNPIEGVFAFACVYMFCTVAFIPGSLLTLGAGLVFGRALGIGRGVALGSFAVILGASIGAIIAFILGRYVLQDTAQVLFNKFKIMRAVDKAIESQGLKLCLLLRLSPVVPFNAFNYIMGLTAISLKDYTIGCLGIIPGTVAYVFIGSSASGIGDMKGNDEEQNDNTKDADGEESSSDNDTVFLIVIIVGAIATVIAVFLISWYAKKALNRILNE 278          
BLAST of mRNA_P-lacustris_contig100.107.1 vs. uniprot
Match: A0A7S3YEX9_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YEX9_HETAK)

HSP 1 Score: 244 bits (622), Expect = 3.520e-72
Identity = 138/245 (56.33%), Postives = 174/245 (71.02%), Query Frame = 2
Query:  143 IVVYVVLDYTVPGLGFVAGVLKSFLEWVEENPGLGALAFALVYIFTTVCFIPGSLLTLGAGLVFGRALGTGWGVLVGTVSVMVGATIGAILAFLLGRFVLQEQAKGLFNKFKILKAVNRAIKVQGLKLVILLRLSPVVPFSAFNYVMGVTDVFFKDYAIGCVGFLPGTTAYVFIGTTASGLLGD-DDEQEXSESNSSGT-----------VQLIVGIVGGIATVIAVVLISIYAKRALNKVLEED 841
            I++YVVLDYT+P LG V  +L SFL WVEE+PG G +AFA VY+ TTV FIPGS+LTLGAGLVFGRAL                      +AFLLGR+VLQ+ A+ LFNKF +LKAV++AI+ +GL+LVILLRLSPV+PFSAFNYVMG+T V F+ Y +GCVG LPGT AYVFIGT+A+GLLGD DD  + SE                 V ++V +VG  ATV+AVVLI++ ++RAL +VL ++
Sbjct:   60 IIIYVVLDYTLPSLGHVNRILTSFLLWVEEHPGEGVVAFASVYVLTTVLFIPGSILTLGAGLVFGRALXXXXXXXXXXXXXXXXXXXXXXIAFLLGRYVLQDSAQKLFNKFSVLKAVDKAIENEGLRLVILLRLSPVIPFSAFNYVMGLTRVMFRQYVLGCVGMLPGTVAYVFIGTSAAGLLGDADDGSQESEXXXXXXXXXXXXXXXRLVNIVVLVVGAAATVLAVVLITVASRRALRRVLMKE 304          
BLAST of mRNA_P-lacustris_contig100.107.1 vs. uniprot
Match: A0A7S4JVV3_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4JVV3_9STRA)

HSP 1 Score: 205 bits (521), Expect = 9.570e-58
Identity = 115/247 (46.56%), Postives = 165/247 (66.80%), Query Frame = 2
Query:  146 VVYVVLDYTVPGLGFVAGVLKSFLEWVEENPGLGALAFALVYIFTTVCFIPGSLLTLGAGLVFGRALGTGWGVLVGTVSVMVGATIGAILAFLLGRFVLQEQAKGLFNKFKILKAVNRAIKVQGLKLVILLRLSPVVPFSAFNYVMGVTDVFFKDYAIGCVGFLPGTTAYVFIGTTASGLLGDDDEQEXSESNSSGTVQLIVGIVGGIATVIAVVLISIYAKRALNKVLEEDRIAQEALEREGGLEG 886
            +V+V++D T  G  ++   +++FL W+EENP  G   F  VY+  TV F+PG +LTLGAG VF  A GTG G+ VGT+SV VGA++G++LAFL+ R++L+E A GL  KF I +A+++A++ +GLK++ILLRLSPV+PF+A NYV GVT V FKDY++     LPGT  YVF+G +A  L           S  S  + +   +VG +  ++AV L S YAK+ LNK+L+++   +EA ER  G EG
Sbjct:   29 IVFVIIDSTTNG--YIKDGIQTFLRWIEENPIEGFFMFMGVYVLATVLFVPGLILTLGAGYVFSNAFGTGLGLFVGTISVFVGASLGSMLAFLISRYILREWAVGLTEKFPIFRAIDQALEEKGLKIIILLRLSPVIPFNALNYVCGVTAVSFKDYSLALFAMLPGTILYVFLGASAQSLA------TIGSSTDSKALTISTVVVGVVLGIVAVALSSRYAKKELNKILDQE---EEANERIAGGEG 264          
BLAST of mRNA_P-lacustris_contig100.107.1 vs. uniprot
Match: A0A6H5JID7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JID7_9PHAE)

HSP 1 Score: 200 bits (509), Expect = 4.190e-55
Identity = 105/227 (46.26%), Postives = 159/227 (70.04%), Query Frame = 2
Query:  203 LKSFLEWVEENPGLGALAFALVYIFTTVCFIPGSLLTLGAGLVFGRALGTGWGVLVGTVSVMVGATIGAILAFLLGRFVLQEQAKGLFNKFKILKAVNRAIKVQGLKLVILLRLSPVVPFSAFNYVMGVTDVFFKDYAIGCVGFLPGTTAYVFIGTTASGLLGDDDEQEXSESNSSGTVQLIVG----IVGGIATVIAVVLISIYAKRALNKVLEEDRIAQEALERE 871
            L++  EW+E+NP  G + FAL++  +T+ F+PG LLT+GAG+ FGRALG G+GVL G+V+V++GA +  ++AF LGR+VL EQA+    +++IL AVN AI+  G+K++ILLRLSP+VPFS FN++ G+T V  +DY +G VG +PGT A+V+IG + +G +   +EQE   S  +   + I+     IVG +A V+A+V ++IYA+RAL + L E  +   A + E
Sbjct:   93 LETSFEWIEDNPKAGVVVFALLFCLSTLLFVPGLLLTIGAGVAFGRALGFGFGVLWGSVAVLLGAVVACVIAFYLGRYVLHEQAQSCAKRYRILSAVNTAIERNGVKVMILLRLSPLVPFSGFNFIAGLTKVSLRDYLLGTVGIVPGTLAFVYIGASTAGTM---NEQEAMNSGEADRTECIIRMATLIVGAVAAVLAIVAVTIYARRALKQALVESELDANADKEE 316          
BLAST of mRNA_P-lacustris_contig100.107.1 vs. uniprot
Match: A0A7S2A6Q3_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2A6Q3_TRICV)

HSP 1 Score: 195 bits (496), Expect = 1.410e-53
Identity = 102/234 (43.59%), Postives = 159/234 (67.95%), Query Frame = 2
Query:  143 IVVYVVLDYTVPGLGFVAGVLKSFLEWVEENPGLGALAFALVYIFTTVCFIPGSLLTLGAGLVFGRALGTGWGVLVGTVSVMVGATIGAILAFLLGRFVLQEQAKGLFNKFKILKAVNRAIKVQGLKLVILLRLSPVVPFSAFNYVMGVTDVFFKDYAIGCVGFLPGTTAYVFIGTTASGLLGDDDEQEXSESNSSGTVQLIVGIVGGIATVIAVVLISIYAKRALNKVLEEDR 844
            ++V++++D    G  FV G ++  L+W+EENP  G   F  VY   TV F+PGSLLTLG+G VF  + G G+GVL+ T++V VGAT+GA++AF+LGR++L++  + L  K+ + +A+++A++ +GL+++ILLRLSP++PF+A NY+ GVT V FK YA      LPGT  +VF+G +A  L+   D     ++       ++VG+V G   VIA+ L S YAK+ LNK+LE+++
Sbjct:   56 LIVFIIVDSVTHG--FVKGAIEGLLQWIEENPIRGLFVFMAVYFVATVLFVPGSLLTLGSGFVFAESFGLGFGVLLATLAVFVGATLGALVAFILGRYLLRDWVENLTKKYNVFRAIDKALEEKGLRIMILLRLSPIIPFNALNYICGVTSVSFKHYAWANFAILPGTILFVFLGASAGSLV---DSGNGGDTPVVTIATIVVGVVFG---VIAIALTSRYAKKELNKILEQEK 281          
BLAST of mRNA_P-lacustris_contig100.107.1 vs. uniprot
Match: W7TSR1_9STRA (SNARE associated Golgi protein n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TSR1_9STRA)

HSP 1 Score: 189 bits (481), Expect = 2.390e-51
Identity = 112/252 (44.44%), Postives = 165/252 (65.48%), Query Frame = 2
Query:  143 IVVYVVLDYTVPGLGFVAGVLKSFLEWVEENPGLGALAFALVYIFTTVCFIPGSLLTLGAGLVFGRALGTGWGVLVGTVSVMVGATIGAILAFLLGRFVLQEQAKGLFNKFKILKAVNRAIKV-QGLKLVILLRLSPVVPFSAFNYVMGVTDVFFKDYAIGCVGFLPGTTAYVFIGTTASGLLGDDDEQEXSESNSSGTVQLIVGIVGGIATVIAVVLISIYAKRALNKVLEEDRIAQ-EALEREGGLEGGV 892
            +V+ + +DY+  G   VA VL +FLEWV  +P  GA+AFA VY  + V F+PG+ LTLG G +FG+ALG G G +  +++V VGA+ GA+ AF LGR++L E A+   N++ IL+A++ ++   +GLK+V+LLRLSP+VPF+A NY+M VT V  K Y +G VG +P   AY F+GTTA GL      +   ES+    V++ + +VG +A V AV ++S +A+  L K+ +E   A+ E  + EGG EG V
Sbjct:   61 VVILIAVDYSPAGHRHVARVLSTFLEWVGRHPLRGAMAFAAVYALSVVFFVPGAALTLGGGFLFGQALGVGPGTVFASLAVFVGASAGAVAAFSLGRWLLHETAQSTLNRYTILRALDASLHGHRGLKIVLLLRLSPLVPFTALNYMMSVTSVSLKTYTLGLVGMVPAVVAYSFLGTTAGGLT----REAGGESSVERGVKIAMYVVGAVALVAAVGVLSRFAREELRKIQDEGEGARGEGRDVEGGGEGEV 308          
BLAST of mRNA_P-lacustris_contig100.107.1 vs. uniprot
Match: A0A7S1DCG4_CYCTE (Hypothetical protein n=2 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1DCG4_CYCTE)

HSP 1 Score: 187 bits (476), Expect = 2.230e-50
Identity = 104/248 (41.94%), Postives = 158/248 (63.71%), Query Frame = 2
Query:  146 VVYVVLDYTVPGLGFVAGVLKSFLEWVEENPGLGALAFALVYIFTTVCFIPGSLLTLGAGLVFGRALGTGWGVLVGTVSVMVGATIGAILAFLLGRFVLQEQAKGLFNKFKILKAVNRAIKVQGLKLVILLRLSPVVPFSAFNYVMGVTDVFFKDYAIGCVGFLPGTTAYVFIGTTASGLLGDDDEQEXSESNSSGTVQLIVGIVGGIATVIAVVLISIYAKRALNKVLEEDRIAQEALEREGGLEGG 889
            +VYV++D    G   V  ++ SFLEW+E+NP  G  AF +VY   T+ F+PGS+LTLG+G VF  A G G GVL+G++SV  GA+ GAI++FLLGR++L+E  KGL  K+ I +A++ A++ +G +++ LLRLSP++PF+A NY+ GVT +    Y +  +  LPGT  YVF+G +A  L       + + S ++ TV +IV  VG +    A+ L S YAK+ LN+V++       + +  G +E G
Sbjct:   94 IVYVIVDSITTGN--VRSIIGSFLEWIEDNPIPGFFAFMIVYFVATILFVPGSILTLGSGFVFANAFGLGPGVLIGSLSVFFGASSGAIVSFLLGRYLLREWVKGLTKKYAIFEALDVALEEKGFRIMALLRLSPIIPFNAINYIGGVTALSLYAYTLALIAILPGTVLYVFLGASAGSLA------DSASSGNNATVTIIVVAVGCVFGFAAIFLTSYYAKKELNRVIDAREATNSSEDERGDVESG 333          
BLAST of mRNA_P-lacustris_contig100.107.1 vs. uniprot
Match: A0A0G4EY60_VITBC (Uncharacterized protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4EY60_VITBC)

HSP 1 Score: 186 bits (472), Expect = 5.320e-50
Identity = 113/244 (46.31%), Postives = 159/244 (65.16%), Query Frame = 2
Query:  143 IVVYVVLDYTVPGLGFVAGVLKSFLEWVEENPGLGALAFALVYIFTTVCFIPGSLLTLGAGLVFGRALGTGWGVLVGTVSVMVGATIGAILAFLLGRFVLQEQAKGLFNKFKILKAVNRAIKVQGLKLVILLRLSPVVPFSAFNYVMGVTDVFFKDYAIGCVGFLPGTTAYVFIGTTASGLLGDDDEQEXSESNSSGTVQLIVGIVGGIATVIAVVLISIYAKRALNKVLEEDRIAQEALEREG 874
            I+VY+++D T      VA  L  F EWV++NP  G LA+  VY+  TV FIPGS+LTLGAG  F  A G G G+  G  +V+VGA +GA LAF  GRF+ +   +GL +KFK+++A+++  + QGLKL ILLRLSPVVPFSAFNY+MG T   ++DYAIG +G +PGT  YV+IG   +   G    +     + S  V L VG+V   AT IAV +++ +A++AL ++ E++  A EA + +G
Sbjct:   65 IIVYIIIDSTTGQR--VAEGLDIFKEWVQDNPATGILAYMAVYMVCTVAFIPGSILTLGAGFTFVCAFGNGPGMAAGIGAVLVGAFVGAQLAFFCGRFLFKSWVQGLTDKFKVMRAIDKVFETQGLKLNILLRLSPVVPFSAFNYIMGGTRTRYRDYAIGTLGIIPGTALYVYIGAIPA-FAGACSGKAEGSGHWSQWVFLAVGLV---ATFIAVFIVTWFARKALREITEKE--AAEASKADG 300          
BLAST of mRNA_P-lacustris_contig100.107.1 vs. uniprot
Match: A0A7S4W131_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4W131_9STRA)

HSP 1 Score: 184 bits (467), Expect = 1.950e-49
Identity = 101/246 (41.06%), Postives = 155/246 (63.01%), Query Frame = 2
Query:  146 VVYVVLDYTVPGLGFVAGVLKSFLEWVEENPGLGALAFALVYIFTTVCFIPGSLLTLGAGLVFGRALGTGWGVLVGTVSVMVGATIGAILAFLLGRFVLQEQAKGLFNKFKILKAVNRAIKVQGLKLVILLRLSPVVPFSAFNYVMGVTDVFFKDYAIGCVGFLPGTTAYVFIGTTASGLLGDDDEQEXSESNSSGTVQLIVGIVGGIATVIAVVLISIYAKRALNKVLEEDRIAQEALEREGGLE 883
            ++YV++D           ++  FL+W+E+NP  G  AF  VYI  ++ FIPG +LTLGAG VF  ALG G G+ + TV+V  GA  GA  +FL+GR++L++    L  K  I +A++ A+K +GL+++ILLR+SP+VPF+ FNYV GVT +  +DYAIG +G LPGT  Y+ +G++A  L+      + S S +  TV++I  ++G +  V+ V   + YAK+ LNK+L + R    A   EG ++
Sbjct:   40 IIYVIIDLATTKNTM--RIVADFLDWIEDNPAAGVFAFIGVYIIASIFFIPGLILTLGAGFVFANALGLGVGIFLATVAVFFGAFFGACASFLIGRYLLRDCVGKLTKKRVIFEAIDAALKDKGLRIMILLRVSPLVPFNVFNYVAGVTSISLRDYAIGMIGILPGTLLYILLGSSAGSLV------DSSSSGNDSTVRIISIVLGIVFAVLGVYATTYYAKKELNKILSQRREVNAAASTEGDVD 277          
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig100.107.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FIK1_ECTSI1.150e-12784.19Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S2Y1P9_9STRA8.920e-8461.73Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S3YEX9_HETAK3.520e-7256.33Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S4JVV3_9STRA9.570e-5846.56Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A6H5JID7_9PHAE4.190e-5546.26Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S2A6Q3_TRICV1.410e-5343.59Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
W7TSR1_9STRA2.390e-5144.44SNARE associated Golgi protein n=2 Tax=Nannochloro... [more]
A0A7S1DCG4_CYCTE2.230e-5041.94Hypothetical protein n=2 Tax=Cyclophora tenuis Tax... [more]
A0A0G4EY60_VITBC5.320e-5046.31Uncharacterized protein n=1 Tax=Vitrella brassicaf... [more]
A0A7S4W131_9STRA1.950e-4941.06Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig100contigP-lacustris_contig100:138657..142076 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score384.8
Seed ortholog evalue4e-104
Seed eggNOG ortholog2880.D7FIK1
KEGG rclassRC00046
KEGG koko:K00486
KEGG ReactionR01960
KEGG Pathwayko00380,ko01100,map00380,map01100
KEGG ModuleM00038
Hectar predicted targeting categorysignal anchor
EggNOG free text desc.canonical Wnt signaling pathway involved in osteoblast differentiation
EggNOG OGsCOG0398@1,KOG3140@2759
Ec32 ortholog descriptionMajor facilitator superfamily domain
Ec32 orthologEc-27_000060.1
EC1.14.13.9
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Exons4
Model size1875
Cds size990
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig100.107.1prot_P-lacustris_contig100.107.1Pleurocladia lacustris SAG_25_93polypeptideP-lacustris_contig100 139523..142057 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815266.7342176-UTR-P-lacustris_contig100:138656..1395221622815266.7342176-UTR-P-lacustris_contig100:138656..139522Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig100 138657..139522 -
1693493438.8170958-UTR-P-lacustris_contig100:138656..1395221693493438.8170958-UTR-P-lacustris_contig100:138656..139522Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig100 138657..139522 -
1622815266.7969115-UTR-P-lacustris_contig100:142057..1420761622815266.7969115-UTR-P-lacustris_contig100:142057..142076Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig100 142058..142076 -
1693493438.8688467-UTR-P-lacustris_contig100:142057..1420761693493438.8688467-UTR-P-lacustris_contig100:142057..142076Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig100 142058..142076 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815266.746682-CDS-P-lacustris_contig100:139522..1399491622815266.746682-CDS-P-lacustris_contig100:139522..139949Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig100 139523..139949 -
1693493438.8280833-CDS-P-lacustris_contig100:139522..1399491693493438.8280833-CDS-P-lacustris_contig100:139522..139949Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig100 139523..139949 -
1622815266.7580073-CDS-P-lacustris_contig100:140229..1404231622815266.7580073-CDS-P-lacustris_contig100:140229..140423Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig100 140230..140423 -
1693493438.8386288-CDS-P-lacustris_contig100:140229..1404231693493438.8386288-CDS-P-lacustris_contig100:140229..140423Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig100 140230..140423 -
1622815266.7694368-CDS-P-lacustris_contig100:140825..1410411622815266.7694368-CDS-P-lacustris_contig100:140825..141041Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig100 140826..141041 -
1693493438.8487132-CDS-P-lacustris_contig100:140825..1410411693493438.8487132-CDS-P-lacustris_contig100:140825..141041Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig100 140826..141041 -
1622815266.782596-CDS-P-lacustris_contig100:141904..1420571622815266.782596-CDS-P-lacustris_contig100:141904..142057Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig100 141905..142057 -
1693493438.85894-CDS-P-lacustris_contig100:141904..1420571693493438.85894-CDS-P-lacustris_contig100:141904..142057Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig100 141905..142057 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-lacustris_contig100.107.1

>prot_P-lacustris_contig100.107.1 ID=prot_P-lacustris_contig100.107.1|Name=mRNA_P-lacustris_contig100.107.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=330bp
MDNETESGTTALVNSVNDDSAMPPTKQQKIIKAGLLLLLLAIVVYVVLDY
TVPGLGFVAGVLKSFLEWVEENPGLGALAFALVYIFTTVCFIPGSLLTLG
AGLVFGRALGTGWGVLVGTVSVMVGATIGAILAFLLGRFVLQEQAKGLFN
KFKILKAVNRAIKVQGLKLVILLRLSPVVPFSAFNYVMGVTDVFFKDYAI
GCVGFLPGTTAYVFIGTTASGLLGDDDEQEESESNSSGTVQLIVGIVGGI
ATVIAVVLISIYAKRALNKVLEEDRIAQEALEREGGLEGGVSGNGGDGDG
PVGPRWFTTGCTGARRSNTGLSWERAMAG*
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mRNA from alignment at P-lacustris_contig100:138657..142076-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-lacustris_contig100.107.1 ID=mRNA_P-lacustris_contig100.107.1|Name=mRNA_P-lacustris_contig100.107.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=3420bp|location=Sequence derived from alignment at P-lacustris_contig100:138657..142076- (Pleurocladia lacustris SAG_25_93)
CGACACGAACCACGTCAACATGGACAACGAGACGGAATCCGGCACCACGG CCTTGGTCAACTCCGTTAACGATGACAGCGCGATGCCGCCGACCAAGCAG CAGAAGATCATTAAGGCTGGACTGCTGTTGTTACTGCTGGCTATCGTGGT CTACGTGGTGCTCGATTATACGGTGAGATGAAAACAACAGGTGTGAAACT GTAGACTAGACTCGACTACTGGAGTACAGCAGTGCTGTAATGCCCACGCA AAGTAGTTACCTACCTCACCTCGCACGTGTGCAATCAGCAGTATTGTGCG TTACAGCGTCGCGGGGTTGTTGTAGGGGCCGTCGTTGAGGCCCGCTTTCA GTCAGGGGCCCATAAGCCTAACCAAGTATCACAGAGGAAGGAGGGTGTGG GCTGTTCTTGTTGTAATTTTCTCGGAAATCCGTGTGTTGCAGTCGACTTC AGTCGGGTGGCGAATCACCTTGGGGAATGATTTACGAACGACTTGGCACG TCGTTGACCTGAGTTGGGTAAGGATGGGAAGGCTGCGTATCCAAAACAGC AGTCGATCGTACAACTCATTCTATTGCTGAAGCCCCTTTTCGGGGGCGAC TGTTGCTGCTCCGTGAACAAATACCTTGGAATCTTCACCTCATCGATGTC CTCCCAACTGACACCACCTTCGGCGACCCCGCGCGGGAATCAGTCACGAC ACTGCTGCTCTTGTAGTACGGACGCACTCGTGTGCTTGCATCTCTACCTT ACGCTGATTACCAACGCAGGTTGTTCAACTCTATACATCACCCTCAACAA AAGCCTGCCACCAACGGCCTCGCCGGCTGTCTGCGCCGTGTAGGTTTTCG ACACCGAGATATCTGTGAAGCTTTTTCTACACCTTTGCATCCTTGCACAC GCCTCCCAATATTGCATTTAATTGGTCAAATTACCAAGGCATGGACATTT TTCCTGCGACGGAGGAAATTGAGCACCAATTACCCTCGATTCTCTGACCC GGGTCTCACCTATCTCCCTGTGGCCGTGCATCCAGGTTCCCGGCCTGGGC TTCGTTGCCGGCGTCCTCAAAAGCTTCTTGGAGTGGGTTGAGGAAAACCC TGGACTCGGCGCACTTGCCTTCGCCCTCGTGTACATCTTCACGACCGTGT GTTTCATCCCTGGCTCGCTGCTGACGCTGGGGGCTGGCCTTGTCTTTGGC CGAGCGCTAGGGACGGGCTGGGGCGTACTTGTGGGAACAGTTTCAGTGAT GGTGAGCTGGGACTCGTTATGACAATGGCCCCATCATTTTCTATGCTTGT TTATTAGGTTACCGCACCGTTTGGCGAACGACGGTGTAGACACACGGCCA GCGGACAGCGAACACCTATATGACGAGCTATTTTCGATGGGACCGCACTG CTGTGTCCTTCTTTAGGCAAACCTTAACCTCACATCCCTCTCTCTGACAT GTACAGTACTCCTTCCGAGCGGGTCACATCGCCCTTCCGATGTGGAAATT TCCAGATCCGAAGTGTTGTAAATTTTCGAGACTTGAGCTTCAGCGTTCTA TCTCGAGCATGTTCCGTGTTATTTTTATCTACCATCCCGCGCCCTCTCGC TGTCTGAACCTATCTCCGATGTTGCCTTCCTCGACATATTGCCCTTTGTA CAGGTCGGTGCCACGATCGGCGCCATCTTGGCCTTCCTGCTCGGCCGTTT CGTGCTCCAGGAGCAGGCTAAGGGGCTGTTCAACAAGTTCAAGATCCTCA AGGCCGTTAATCGCGCGATCAAGGTGCAGGGATTGAAGCTTGTGATTCTC CTCCGCCTCTCTCCGGTGGTGCCCTTCAGCGCCTTCAACTACGTCATGTG AGGAAGTTGTTGTGGATGTTCGTTGTAGCCTGATTGTTGTGTAGAACGCC GTCGGAGTTTGGCGGGGTGGAATTGCTCTGAGGGACAGCGTACATCGCGC ATCAGATGAAGGGGGGTTGGGGTGATCGACGCGCGTAAATTGACTCTCAT CGGGTGCCTGTTGTTGTCGGGCACAACGAAAGCCGCAAAGAACGTCTTGT TGCAAAGGCCGTCAAACAGACCCCCCTCCCTCCACCTCGCCTCTCCTCAC CCTTGCTTATGTTTTGTTTGATTTCAGGGGAGTCACGGATGTGTTTTTCA AAGACTACGCTATCGGCTGTGTGGGGTTCCTCCCCGGTACCACTGCCTAT GTGTTTATCGGCACCACTGCATCTGGTCTGTTGGGAGACGACGACGAGCA AGAGGAGTCAGAGAGCAACAGTAGTGGCACCGTGCAGCTCATCGTGGGAA TTGTCGGGGGCATCGCTACCGTGATCGCGGTCGTGCTGATCAGCATCTAC GCCAAGCGCGCTCTTAACAAGGTTTTGGAGGAGGACAGGATAGCTCAGGA GGCGCTGGAACGAGAGGGGGGGCTTGAAGGTGGTGTATCGGGCAACGGGG GTGACGGCGATGGACCAGTCGGCCCAAGATGGTTCACGACCGGCTGTACT GGAGCACGCCGTTCGAATACCGGTTTAAGTTGGGAGAGGGCGATGGCGGG ATAAAAATACATCAAGGGCTGTTTGCTGCATACAGCAAGTGATTGTTTGG TATTGCCGCGGCTGGTATTTGCATGCTGTGAGAGGGAGAGGGTGGAGGAT TGCGCATTTTGAGGTATACTGTAGCTGTTTTGGTTACGGGCATGGCCGCA CGTGTGGTTTATCTAGAATGAACGTGTTATTGCTGACTTTGGCACGCTGT GCATGTGTCCAAACACTTGTTGCAGTCGTATTGTATTGCTGTTGTGGTAA TGTTTTCGCATGCCGCTTTTTTTTACAAGCCGAGTGCTCGTCGTCCTCGT CAGCCTTTCGCTGGTGGTGACTGATGCCCTCGCCTCATGATTGGGCCTCG AGACATGAGGGTGCGGTGAGTGTCGGGGGGCTTCTTTACTGTGTGTTGTG TCGGTGATATCTTAGGTTGACAGGTTATGTGCTTGGTAATGTAGCGCGCC AAACAAAGCAGAAGGAGGGAGTTTTCGGGGGCGTTATACTGATCTGAAAG TAATGTTGTGTAAAGTTATTGTGAGTGAGGTGAAGGACAACGTACCGTTT TCATGGGGAAGCGTACTCACTACATACAAACACGGGCGGTGAGCGCGCAA GAGGTCACACTTTTGGCAGCGTGCGTGTTTTGTCTTGTGCTGTGGGGGAT GCTATTGTCGCTCCGCTGTTGGATGGAGCACGGCGGGGCCGTTCCGGGTT ATGCATGGTTTTTGGAGACAGGGCATGAAATGAACGATACAAACACATGG TGTGCGAGCCAGATTCTTGACCCTTGCACGACTAGTTTCGTGGCCCCGGC GGGGCACCACGTGTTTGGCGTGAACCTTCAAACTGAAGTGTGTGGCCGGG ACCACGCTGAGGAGGGACCC
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Coding sequence (CDS) from alignment at P-lacustris_contig100:138657..142076-

>mRNA_P-lacustris_contig100.107.1 ID=mRNA_P-lacustris_contig100.107.1|Name=mRNA_P-lacustris_contig100.107.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=1980bp|location=Sequence derived from alignment at P-lacustris_contig100:138657..142076- (Pleurocladia lacustris SAG_25_93)
ATGGACAACGAGACGGAATCCGGCACCACGGCCTTGGTCAACTCCGTTAA
CGATGACAGCGCGATGCCGCCGACCAAGCAGCAGAAGATCATTAAGGCTG
GACTGCTGTTGTTACTGCTGGCTATCGTGGTCTACGTGGTGCTCGATTAT
ACGATGGACAACGAGACGGAATCCGGCACCACGGCCTTGGTCAACTCCGT
TAACGATGACAGCGCGATGCCGCCGACCAAGCAGCAGAAGATCATTAAGG
CTGGACTGCTGTTGTTACTGCTGGCTATCGTGGTCTACGTGGTGCTCGAT
TATACGGTTCCCGGCCTGGGCTTCGTTGCCGGCGTCCTCAAAAGCTTCTT
GGAGTGGGTTGAGGAAAACCCTGGACTCGGCGCACTTGCCTTCGCCCTCG
TGTACATCTTCACGACCGTGTGTTTCATCCCTGGCTCGCTGCTGACGCTG
GGGGCTGGCCTTGTCTTTGGCCGAGCGCTAGGGACGGGCTGGGGCGTACT
TGTGGGAACAGTTTCAGTGATGGTTCCCGGCCTGGGCTTCGTTGCCGGCG
TCCTCAAAAGCTTCTTGGAGTGGGTTGAGGAAAACCCTGGACTCGGCGCA
CTTGCCTTCGCCCTCGTGTACATCTTCACGACCGTGTGTTTCATCCCTGG
CTCGCTGCTGACGCTGGGGGCTGGCCTTGTCTTTGGCCGAGCGCTAGGGA
CGGGCTGGGGCGTACTTGTGGGAACAGTTTCAGTGATGGTCGGTGCCACG
ATCGGCGCCATCTTGGCCTTCCTGCTCGGCCGTTTCGTGCTCCAGGAGCA
GGCTAAGGGGCTGTTCAACAAGTTCAAGATCCTCAAGGCCGTTAATCGCG
CGATCAAGGTGCAGGGATTGAAGCTTGTGATTCTCCTCCGCCTCTCTCCG
GTGGTGCCCTTCAGCGCCTTCAACTACGTCATGTCGGTGCCACGATCGGC
GCCATCTTGGCCTTCCTGCTCGGCCGTTTCGTGCTCCAGGAGCAGGCTAA
GGGGCTGTTCAACAAGTTCAAGATCCTCAAGGCCGTTAATCGCGCGATCA
AGGTGCAGGGATTGAAGCTTGTGATTCTCCTCCGCCTCTCTCCGGTGGTG
CCCTTCAGCGCCTTCAACTACGTCATGGGAGTCACGGATGTGTTTTTCAA
AGACTACGCTATCGGCTGTGTGGGGTTCCTCCCCGGTACCACTGCCTATG
TGTTTATCGGCACCACTGCATCTGGTCTGTTGGGAGACGACGACGAGCAA
GAGGAGTCAGAGAGCAACAGTAGTGGCACCGTGCAGCTCATCGTGGGAAT
TGTCGGGGGCATCGCTACCGTGATCGCGGTCGTGCTGATCAGCATCTACG
CCAAGCGCGCTCTTAACAAGGTTTTGGAGGAGGACAGGATAGCTCAGGAG
GCGCTGGAACGAGAGGGGGGGCTTGAAGGTGGTGTATCGGGCAACGGGGG
TGACGGCGATGGACCAGTCGGCCCAAGATGGTTCACGACCGGCTGTACTG
GAGCACGCCGTTCGAATACCGGTTTAAGTTGGGAGAGGGCGATGGCGGGA
TAAGGGAGTCACGGATGTGTTTTTCAAAGACTACGCTATCGGCTGTGTGG
GGTTCCTCCCCGGTACCACTGCCTATGTGTTTATCGGCACCACTGCATCT
GGTCTGTTGGGAGACGACGACGAGCAAGAGGAGTCAGAGAGCAACAGTAG
TGGCACCGTGCAGCTCATCGTGGGAATTGTCGGGGGCATCGCTACCGTGA
TCGCGGTCGTGCTGATCAGCATCTACGCCAAGCGCGCTCTTAACAAGGTT
TTGGAGGAGGACAGGATAGCTCAGGAGGCGCTGGAACGAGAGGGGGGGCT
TGAAGGTGGTGTATCGGGCAACGGGGGTGACGGCGATGGACCAGTCGGCC
CAAGATGGTTCACGACCGGCTGTACTGGAGCACGCCGTTCGAATACCGGT
TTAAGTTGGGAGAGGGCGATGGCGGGATAA
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