prot_P-lacustris_contig1127.1028.1 (polypeptide) Pleurocladia lacustris SAG_25_93

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-lacustris_contig1127.1028.1
Unique Nameprot_P-lacustris_contig1127.1028.1
Typepolypeptide
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Sequence length61
Homology
[Close]
BLAST of mRNA_P-lacustris_contig1127.1028.1 vs. uniprot
Match: D7G3P0_ECTSI (Integrins alpha chain n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3P0_ECTSI)

HSP 1 Score: 70.5 bits (171), Expect = 6.710e-13
Identity = 37/57 (64.91%), Postives = 43/57 (75.44%), Query Frame = 0 
Query:    1 ARRRVIKS-CVCSTLLCPFSAAVGTFESSFNVSAFARIYNAGESNEDWLGYSCASIG 56
            ARR VI++    S LLCP +AA GTF+S+ N S+  RIYNA E NEDWLGYSCASIG
Sbjct:    9 ARRGVIEAGFFLSALLCPLAAAAGTFQSNVNASSSPRIYNASEMNEDWLGYSCASIG 65
[Close]
BLAST of mRNA_P-lacustris_contig1127.1028.1 vs. uniprot
Match: D7G550_ECTSI (Integrin alpha chain n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G550_ECTSI)

HSP 1 Score: 70.1 bits (170), Expect = 1.420e-12
Identity = 36/57 (63.16%), Postives = 43/57 (75.44%), Query Frame = 0 
Query:    1 ARRRVIKS-CVCSTLLCPFSAAVGTFESSFNVSAFARIYNAGESNEDWLGYSCASIG 56
            ARR V+++    S LLCP +AA GTF+S+ N S+  RIYNA E NEDWLGYSCASIG
Sbjct:    9 ARRGVVEAGFFLSALLCPLAAAAGTFQSNVNASSSPRIYNASEMNEDWLGYSCASIG 65
[Close]
BLAST of mRNA_P-lacustris_contig1127.1028.1 vs. uniprot
Match: A0A6H5L9N8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L9N8_9PHAE)

HSP 1 Score: 69.3 bits (168), Expect = 2.470e-12
Identity = 37/57 (64.91%), Postives = 42/57 (73.68%), Query Frame = 0 
Query:    1 ARRRVIKS-CVCSTLLCPFSAAVGTFESSFNVSAFARIYNAGESNEDWLGYSCASIG 56
            ARR VI++    S LLCP +AA GTF S+ N S+  RIYNA E NEDWLGYSCASIG
Sbjct:    9 ARRGVIEAGFFLSALLCPLAAAAGTFRSNVNASSSPRIYNASEINEDWLGYSCASIG 65
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig1127.1028.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7G3P0_ECTSI6.710e-1364.91Integrins alpha chain n=1 Tax=Ectocarpus siliculos... [more]
D7G550_ECTSI1.420e-1263.16Integrin alpha chain n=1 Tax=Ectocarpus siliculosu... [more]
A0A6H5L9N8_9PHAE2.470e-1264.91Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 22..60
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 8..16
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..7
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..21
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 17..21
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..21
score: 0.549

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig1127contigP-lacustris_contig1127:60598..60780 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig1127.1028.1mRNA_P-lacustris_contig1127.1028.1Pleurocladia lacustris SAG_25_93mRNAP-lacustris_contig1127 60598..60780 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-lacustris_contig1127.1028.1 ID=prot_P-lacustris_contig1127.1028.1|Name=mRNA_P-lacustris_contig1127.1028.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=61bp
ARRRVIKSCVCSTLLCPFSAAVGTFESSFNVSAFARIYNAGESNEDWLGY
SCASIGGEAA*
back to top