mRNA_P-lacustris_contig1124.1013.1 (mRNA) Pleurocladia lacustris SAG_25_93

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-lacustris_contig1124.1013.1
Unique NamemRNA_P-lacustris_contig1124.1013.1
TypemRNA
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig1124.1013.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig1124contigP-lacustris_contig1124:61487..61768 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size189
Cds size153
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig1124.1013.1prot_P-lacustris_contig1124.1013.1Pleurocladia lacustris SAG_25_93polypeptideP-lacustris_contig1124 61487..61732 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815426.4089193-CDS-P-lacustris_contig1124:61486..615871622815426.4089193-CDS-P-lacustris_contig1124:61486..61587Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1124 61487..61587 -
1693493534.5397851-CDS-P-lacustris_contig1124:61486..615871693493534.5397851-CDS-P-lacustris_contig1124:61486..61587Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1124 61487..61587 -
1622815426.4238932-CDS-P-lacustris_contig1124:61680..617321622815426.4238932-CDS-P-lacustris_contig1124:61680..61732Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1124 61681..61732 -
1693493534.558382-CDS-P-lacustris_contig1124:61680..617321693493534.558382-CDS-P-lacustris_contig1124:61680..61732Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1124 61681..61732 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815426.4352179-UTR-P-lacustris_contig1124:61732..617681622815426.4352179-UTR-P-lacustris_contig1124:61732..61768Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1124 61733..61768 -
1693493534.5728486-UTR-P-lacustris_contig1124:61732..617681693493534.5728486-UTR-P-lacustris_contig1124:61732..61768Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1124 61733..61768 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-lacustris_contig1124.1013.1

>prot_P-lacustris_contig1124.1013.1 ID=prot_P-lacustris_contig1124.1013.1|Name=mRNA_P-lacustris_contig1124.1013.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=51bp
MIGIVIVIGFVLLGRKEYDAGTCLLSGHLLCGPLAVWSASCLVWGCVIAL
*
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mRNA from alignment at P-lacustris_contig1124:61487..61768-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-lacustris_contig1124.1013.1 ID=mRNA_P-lacustris_contig1124.1013.1|Name=mRNA_P-lacustris_contig1124.1013.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=282bp|location=Sequence derived from alignment at P-lacustris_contig1124:61487..61768- (Pleurocladia lacustris SAG_25_93)
AGCTGAAGGGCTAGAGTCTAACACTACATCCATAAGATGATCGGCATCGT
CATCGTCATCGGGTTTGTGCTCTTGGGCAGGAAGGAGTGCCCACAGCGCG
AGGGCTATCGTCATCGTCACCTATCCACAGGTCCGTGTCACTACCGGCGC
AGTCGTCACCTCCTCCGCACTCTTGAAGGAGATGATGCAGGGACATGTCT
GCTGTCTGGGCATCTGCTGTGTGGACCGCTGGCTGTGTGGTCTGCTTCGT
GCTTGGTGTGGGGCTGTGTGATTGCCCTCTGA
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Coding sequence (CDS) from alignment at P-lacustris_contig1124:61487..61768-

>mRNA_P-lacustris_contig1124.1013.1 ID=mRNA_P-lacustris_contig1124.1013.1|Name=mRNA_P-lacustris_contig1124.1013.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=306bp|location=Sequence derived from alignment at P-lacustris_contig1124:61487..61768- (Pleurocladia lacustris SAG_25_93)
ATGATCGGCATCGTCATCGTCATCGGGTTTGTGCTCTTGGGCAGGAAGGA
GTATGATCGGCATCGTCATCGTCATCGGGTTTGTGCTCTTGGGCAGGAAG
GAGTATGATGCAGGGACATGTCTGCTGTCTGGGCATCTGCTGTGTGGACC
GCTGGCTGTGTGGTCTGCTTCGTGCTTGGTGTGGGGCTGTGTGATTGCCC
TCTGAATGATGCAGGGACATGTCTGCTGTCTGGGCATCTGCTGTGTGGAC
CGCTGGCTGTGTGGTCTGCTTCGTGCTTGGTGTGGGGCTGTGTGATTGCC
CTCTGA
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