mRNA_P-lacustris_contig1107.888.1 (mRNA) Pleurocladia lacustris SAG_25_93
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Overview
Homology
BLAST of mRNA_P-lacustris_contig1107.888.1 vs. uniprot
Match: A0A835WDY3_CHLIN (Uncharacterized protein n=1 Tax=Chlamydomonas incerta TaxID=51695 RepID=A0A835WDY3_CHLIN) HSP 1 Score: 57.4 bits (137), Expect = 1.410e-6 Identity = 32/85 (37.65%), Postives = 45/85 (52.94%), Query Frame = 1
Query: 79 LDDKTAWYLSDPEYRPFRGFLGVTVVFISPNHQRTNEFLKIDGAVRVFMPVWNVTELLDCRLAVYPHVPVAVVEERCRIVGGVAR 333
L+D WY++D P L TV+ SP + E LK +GA ++MP+W + ELL CR +Y V ++ E GGVAR
Sbjct: 170 LNDPATWYIADG-LPPLLNVLARTVLLTSPKREAFKEMLK-EGARLLYMPLWELDELLACRRLLYSTVAESLTTELFEYYGGVAR 252
BLAST of mRNA_P-lacustris_contig1107.888.1 vs. uniprot
Match: D8UKX4_VOLCA (Uncharacterized protein n=1 Tax=Volvox carteri f. nagariensis TaxID=3068 RepID=D8UKX4_VOLCA) HSP 1 Score: 55.8 bits (133), Expect = 5.240e-6 Identity = 42/125 (33.60%), Postives = 61/125 (48.80%), Query Frame = 1
Query: 148 TVVFISPNHQRTNEFLKIDGAVRVFMPVWNVTELLDCRLAVYPHVPVAVVEERCRIVGGVARAVFQEEKFQLAKKRIETLV---TKLDARMLIEATFATISGDNRGKDAPDELFHIFSDSSDNFK 513
TV+ SP H+ +K +GA ++MP+W + ELLDCR +Y VP V+ GG+AR V Q ++ +E L T +D + + A I R +A L HI +D D FK
Sbjct: 151 TVLLTSPVHETMKVIVK-EGADVLYMPLWELEELLDCRSKMYDMVPEVTVKGLFGYYGGMARYVLQHPSLDPDREVLELLRPLRTAIDTCNVKQVRMA-IGAVERVPEASHRLVHIVAD--DEFK 271
BLAST of mRNA_P-lacustris_contig1107.888.1 vs. uniprot
Match: A0A8J4CSY9_9CHLO (Uncharacterized protein n=2 Tax=Volvox reticuliferus TaxID=1737510 RepID=A0A8J4CSY9_9CHLO) HSP 1 Score: 55.8 bits (133), Expect = 5.460e-6 Identity = 34/112 (30.36%), Postives = 55/112 (49.11%), Query Frame = 1
Query: 58 DFVSKGYLDDKTAWYLSDPEYRPFRGFLGVTVVFISPNHQRTNEFLKIDGAVRVFMPVWNVTELLDCRLAVYPHVPVAVVEERCRIVGGVARAVFQEEKFQLAKKRIETLVT 393
DF K L + W++ D RG TV+ SP+ R EFLK+ GA ++MP+W E+ CR ++P + A+VE G + R V + + A+ ++ +T
Sbjct: 270 DFTEK--LMNSATWWIIDMGTALERG--ANTVLLASPDKARYKEFLKLQGANPLYMPIWTNDEIEKCRSRLFPTLDAAMVEALKSKWGNIPRYVLERALNEWAQGSLDMAIT 377
BLAST of mRNA_P-lacustris_contig1107.888.1 vs. uniprot
Match: A0A2K3DTZ5_CHLRE (Uncharacterized protein n=3 Tax=Chlamydomonas reinhardtii TaxID=3055 RepID=A0A2K3DTZ5_CHLRE) HSP 1 Score: 54.3 bits (129), Expect = 1.840e-5 Identity = 50/151 (33.11%), Postives = 70/151 (46.36%), Query Frame = 1
Query: 79 LDDKTAWYLSDPEYRPFRGFLGVTVVFISPNHQRTNEFLKIDGAVRVFMPVWNVTELLDCRLAVYPHVPVAVVEERCRIVGGVARAVFQEEKFQLAK---KRIETL---VTKLDARMLIEATFATISGDNRGKDAPDELFHIFSDSSDNFK 513
L ++ WY++D P L TV+ P+ + E LK A ++MP W + ELL CR +Y V + +E + GGVAR V Q K +K K +E L V D L + +IS G D L HI +D +NFK
Sbjct: 194 LMNRATWYITDG-VPPMLNCLARTVLLTPPDRKIYKEMLK-QSASLLYMPCWELGELLACRRLLYGTVDETLAKELYQHYGGVARFVLQLPKANPSKGLDKLLEELHEAVASCDTDQL-RMSVGSIS---TGPDVSHMLLHIVAD--ENFK 336
BLAST of mRNA_P-lacustris_contig1107.888.1 vs. uniprot
Match: M4BV81_HYAAE (Uncharacterized protein n=2 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BV81_HYAAE) HSP 1 Score: 53.9 bits (128), Expect = 2.260e-5 Identity = 27/93 (29.03%), Postives = 50/93 (53.76%), Query Frame = 1
Query: 148 TVVFISPNHQRTNEFLKIDGAVRVFMPVWNVTELLDCRLAVYPHVPVAVVEERCRIVGGVARAVFQEEKFQLAKKRIETLVTKLDARMLIEAT 426
T++ SP + + + A +FMPVW E+ CR +YPH PVA+V+E R GG+AR V + + + + + ++ + +++A+
Sbjct: 174 TILVTSPRRDVWYHYSERNCAT-LFMPVWTKEEIFRCRELMYPHTPVAIVDECYRRWGGIARYVLRHAEDPQQQGLLGEAIARIQLKAILDAS 265
BLAST of mRNA_P-lacustris_contig1107.888.1 vs. uniprot
Match: A0A150GCZ0_GONPE (Uncharacterized protein n=1 Tax=Gonium pectorale TaxID=33097 RepID=A0A150GCZ0_GONPE) HSP 1 Score: 53.9 bits (128), Expect = 2.480e-5 Identity = 39/108 (36.11%), Postives = 54/108 (50.00%), Query Frame = 1
Query: 37 VMKANLYDFVSKGYLDDKTAWYLSD--PEYRPFRGFLGVTVVFISPNHQRTNEFLKIDGAVRVFMPVWNVTELLDCRLAVYP-----HVPVAVVEERCRIVGGVARAV 339
V + N F + L D AWY+S+ P R + ++ SP+ RT E LK GA +FMP+W++ ELL+CR VY + V + E GGVAR V
Sbjct: 185 VRRGNRQSFADQ--LQDPKAWYISEGIPPTLLSRAHI---LLIASPSRSRTQEMLK-SGAYELFMPLWSLKELLECRAKVYDGSVGEDLAVCLYEH----YGGVARYV 282
BLAST of mRNA_P-lacustris_contig1107.888.1 vs. uniprot
Match: A0A2J8AJ12_9CHLO (Uncharacterized protein (Fragment) n=1 Tax=Tetrabaena socialis TaxID=47790 RepID=A0A2J8AJ12_9CHLO) HSP 1 Score: 53.9 bits (128), Expect = 2.500e-5 Identity = 29/87 (33.33%), Postives = 45/87 (51.72%), Query Frame = 1
Query: 85 DKTAWYLSDPEYRPFRGFLGVTVVFISPNHQRTNEFLKIDGAVRVFMPVWNVTELLDCRLAVYPHVPVAVVEERCRIVGGVARAVFQ 345
D AWY++D P L V+ SP H+ E K G + ++MP+W + ELL+CR +Y V + ++ + GG AR V +
Sbjct: 187 DPAAWYIADG-VPPQLNCLARIVLLTSPKHETYKEVRKASGKM-LYMPLWELDELLECRRLLYDTVSEGLAKDLYQYYGGAARFVLE 271
BLAST of mRNA_P-lacustris_contig1107.888.1 vs. uniprot
Match: D8UKX3_VOLCA (Uncharacterized protein n=1 Tax=Volvox carteri f. nagariensis TaxID=3068 RepID=D8UKX3_VOLCA) HSP 1 Score: 53.1 bits (126), Expect = 2.830e-5 Identity = 29/80 (36.25%), Postives = 43/80 (53.75%), Query Frame = 1
Query: 148 TVVFISPNHQRTNEFLKIDGAVRVFMPVWNVTELLDCRLAVYPHVPVAVVEERCRIVGGVARAVFQEEKFQLAKKRIETL 387
TV+ SP H+ +K +GA ++MP+W + ELLDCR +Y VP V+ GG+AR V Q ++ +E L
Sbjct: 117 TVLLTSPVHETMKVIVK-EGADVLYMPLWELEELLDCRSKMYDMVPEVTVKGLFGYYGGMARYVLQHPSLDPDREVLELL 195
BLAST of mRNA_P-lacustris_contig1107.888.1 vs. uniprot
Match: A0A8J4CT77_9CHLO (Uncharacterized protein n=2 Tax=Volvox reticuliferus TaxID=1737510 RepID=A0A8J4CT77_9CHLO) HSP 1 Score: 53.5 bits (127), Expect = 2.970e-5 Identity = 32/96 (33.33%), Postives = 48/96 (50.00%), Query Frame = 1
Query: 58 DFVSKGYLDDKTAWYLSDPEYRPFRGFLGVTVVFISPNHQRTNEFLKIDGAVRVFMPVWNVTELLDCRLAVYPHVPVAVVEERCRIVGGVARAVFQ 345
DF K L + W++ D RG TV+ SP+ R EFLK+ GA ++MP+W E+ CR ++P + A+VE G + R V +
Sbjct: 270 DFTEK--LMNSATWWIIDMGTALERG--ANTVLLASPDKARYKEFLKLQGANPLYMPIWTNDEIEKCRSRLFPTLDAAMVEALKSKWGNIPRYVLE 361
BLAST of mRNA_P-lacustris_contig1107.888.1 vs. uniprot
Match: A8J9V5_CHLRE (Predicted protein n=1 Tax=Chlamydomonas reinhardtii TaxID=3055 RepID=A8J9V5_CHLRE) HSP 1 Score: 53.5 bits (127), Expect = 3.170e-5 Identity = 46/151 (30.46%), Postives = 67/151 (44.37%), Query Frame = 1
Query: 79 LDDKTAWYLSDPEYRPFRGFLGVTVVFISPNHQRTNEFLKIDGAVRVFMPVWNVTELLDCRLAVYPHVPVAVVEERCRIVGGVARAVFQEEKFQLAKKRIETL------VTKLDARMLIEATFATISGDNRGKDAPDELFHIFSDSSDNFK 513
L ++ WY++D L TV+ P Q E +K GA +++MP W + ELL CR +Y V + +E + GGV R V + +K E L V D + L + +IS G D L HI +D +NFK
Sbjct: 66 LMNRATWYITDGVQPRLINCLARTVLLTPPERQTLKEMIK-KGADKLYMPCWELGELLACRRLLYGTVDETLAKELYQHYGGVPRFVLCFPEANPSKGLDELLEDLHEAVASCDTKQL-RMSVGSIS---TGPDVSHMLLHIVAD--ENFK 209 The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig1107.888.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 15
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-lacustris_contig1107.888.1 >prot_P-lacustris_contig1107.888.1 ID=prot_P-lacustris_contig1107.888.1|Name=mRNA_P-lacustris_contig1107.888.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=171bp VSANWYRFSNEGVMKANLYDFVSKGYLDDKTAWYLSDPEYRPFRGFLGVTback to top mRNA from alignment at P-lacustris_contig1107:289..803+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-lacustris_contig1107.888.1 ID=mRNA_P-lacustris_contig1107.888.1|Name=mRNA_P-lacustris_contig1107.888.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=515bp|location=Sequence derived from alignment at P-lacustris_contig1107:289..803+ (Pleurocladia lacustris SAG_25_93)back to top Coding sequence (CDS) from alignment at P-lacustris_contig1107:289..803+ >mRNA_P-lacustris_contig1107.888.1 ID=mRNA_P-lacustris_contig1107.888.1|Name=mRNA_P-lacustris_contig1107.888.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=1026bp|location=Sequence derived from alignment at P-lacustris_contig1107:289..803+ (Pleurocladia lacustris SAG_25_93)back to top |