mRNA_P-lacustris_contig109.747.1 (mRNA) Pleurocladia lacustris SAG_25_93
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Overview
Homology
BLAST of mRNA_P-lacustris_contig109.747.1 vs. uniprot
Match: A0A6H5KTD8_9PHAE (ULP_PROTEASE domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTD8_9PHAE) HSP 1 Score: 348 bits (894), Expect = 8.000e-101 Identity = 273/638 (42.79%), Postives = 339/638 (53.13%), Query Frame = 1
Query: 283 MGQYDRKGNQLSRGG--TGGXXXXGASMQRI-------GSGIVSRN--------TTQTHFSSPPPQPPHGRQLKAARSFFG--DARAEKPRERATPGIKTVLTMAPSQGSRSLAAGRSSQRQPQAKTGGGARINPGASI---------GATTTKPAMVEA-RTKRKQQGQGTGYANRWKDGSGDEADAYDT---RVCGSRSEKLTRNVPQSITNTYGTARGNGSGGSRSSVNDGGWTRPSTDAYSSSLRQMGPTEPVRRRKSQSAA------TVPRKAG-PPKSPEVVTVDDSDSDS-------EHEEEVEEAPERCARGDGEGTGHHGAQKRRRPEETSKDGGDGSDE------WRGQAPTNRASEEGRKSESSSAQDRGESTEAEFGSVPEMAAEAVMVGKWVVRGSSYTSINMRGDVKIGLNGGGDTKDTAMCIPSGEITFFGFCEGRGTAKAFIAIKTKADGSIANDPSYRRLYDPTDHGAAGLITVFLRTGHKFGEHAKSIVHAIT--PDGEHANVVNTDLEMKGELPRILRLGLEKDRTAAKEEEQSGR-LRTRRTLRSAVK----MEEFGKVIFHYPPEASASDRVAINILDEARTQEGEFLNDSLVDLYLKHMHREAFRQWQKGDGDNGD 2019
MG +DR GN L R G + G G R+ SG V R+ TT ++P P+ ++FF + A+KP RA G K L +A + GS + R+SQ+ GGA+I P + P+ ++ R KR Q+ G +RW DE +D R RS + + S R S+ + P+ PVRR K A T+P+K PP SPE+VT+DD + +EVEE P AR + G GA+KRRR E D D SDE W Q NR+S + R+ +SS Q+RGEST FGSVPEMAAEAVM+GKW+V G YTSIN G+V IGL G GDTKDT +CIPS EITFFGFCEG KAFI IKT +GSIA D SY R YDP D GA GLITVFL H F +H SI+ A+T G+ V D++MKGELPRILRL LE+ R +E+++ GR +RTRR LR+ +EFGKV+FHYPPE SASDRVAIN LDEARTQEGEFLND+LVDLYLKHMHRE FR+W G G +G+
Sbjct: 25 MGSFDRHGNPLKRDGGISRGRGSGGRGSGRLTSIMLPTSSGAVRRDRSTGAATKTTTKPAANPAPK----------KNFFAPEEGHAKKP-ARAPAGTKNRLQLAVTPGSAAATVSRASQQS----RSGGAKITPXXXXXXXXXXXXXSSAQRAPSAIQLDREKRLQRRAGGVTEDRWGGVGEDEKGVFDEPSMRHYSRRSAQPANSYGSSXXXXXXXXXXXXXXXXXXXXXQYNSNRSDLTGMSTPVHLKQPSSPVRRTKRLQAKPAGAQKTIPKKPRKPPGSPELVTIDDXXXXXXXXXXXXDGAKEVEEVPASDARIERAG----GARKRRRGEGADSD--DASDEAAGGSDWCVQTGANRSSADKRRGGASSLQERGESTSPMFGSVPEMAAEAVMIGKWIVMGGCYTSINKVGNVTIGLKGDGDTKDTTLCIPSKEITFFGFCEGGEGTKAFITIKTNPEGSIAKDRSYCRRYDPVDKGAQGLITVFLPPDHDFLQHRPSILSAMTNFESGKKREPVQVDIDMKGELPRILRLTLERHRRETEEDKEVGRSMRTRRGLRTLRSGGGGNDEFGKVLFHYPPEVSASDRVAINSLDEARTQEGEFLNDNLVDLYLKHMHREGFREWANGVGGDGE 641
BLAST of mRNA_P-lacustris_contig109.747.1 vs. uniprot
Match: D8LDN6_ECTSI (ULP_PROTEASE domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDN6_ECTSI) HSP 1 Score: 234 bits (596), Expect = 1.460e-61 Identity = 143/282 (50.71%), Postives = 169/282 (59.93%), Query Frame = 1
Query: 1180 GSDEWRGQAPTNRASEEGRKSESSSAQDRGESTEAEFGSVPEMAAEAVMVGKWVVRGSSYTSINMRGDVKIGLNGGGDTKDTAMCIPSGEITFFGFCEGRGTAKAFIAIKTKADGSIANDPSYRRLYDPTDHGAAGLITVFLRTGHKFGEHAKSIVHAITPDGEHANVVNTDLEMKGELPRILRLGLEKDRTAAKEEEQSGR-LRTRRTLRSAVK-MEEFGKVIFHYPPEASASDRVAINILDEARTQEGEFLNDSLVDLYLKHMHREAFRQWQKGDGDNGD 2019
G +W Q +R+S E R+ +SS Q+RGEST FGSVPEMAAEAVM+GKW+V G YTSINM G+V IGL G GDTKDT +CIPS EITFF G +T F G+ V D++MKGELPRILRL LE+ R +E+++ GR +RTRRTLRS +EFGKV+FHYPPE SASDRVAIN LDEARTQEGEFLND+LVDLYLKHMHRE FR+W G G +G+
Sbjct: 118 GDSDWCVQTGADRSSAEKRRGGASSLQERGESTSPTFGSVPEMAAEAVMIGKWIVMGGCYTSINMVGNVTIGLKGDGDTKDTTLCIPSKEITFF-----------------------------------------GAVTNF-------------------ESGKKREPVQVDIDMKGELPRILRLTLERHRRETEEDKEVGRSMRTRRTLRSGGGGNDEFGKVLFHYPPEVSASDRVAINSLDEARTQEGEFLNDNLVDLYLKHMHREGFREWANGVGGDGE 339
BLAST of mRNA_P-lacustris_contig109.747.1 vs. uniprot
Match: D7G5X7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5X7_ECTSI) HSP 1 Score: 54.7 bits (130), Expect = 4.220e-5 Identity = 44/119 (36.97%), Postives = 61/119 (51.26%), Query Frame = 1
Query: 1645 VHAITPDGEHANVVNTDLEMKGELPRILRLGLEKDRTAAKEEEQSGR------LRTRRTLRSAVKMEEFGKVIFHYPPEASA-----SDRVAINILDEARTQEGEFLNDSLVDLYLKHM 1968
V A+ +GE + VN M+G+LP +R L+ +E ++ G R RRTL SA +F YP +A +D+V I LD RT +GE LND+LVDLYL+ M
Sbjct: 4 VAALRFEGEDS-AVNVVTYMEGQLPVYIRRSLDTHVEETEEAKKDGHGGPRRVFRARRTL-SARSSTPANPFLFEYPLGKAAGGDRFADKVRIYALDVCRTNDGELLNDNLVDLYLRSM 120 The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig109.747.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-lacustris_contig109.747.1 >prot_P-lacustris_contig109.747.1 ID=prot_P-lacustris_contig109.747.1|Name=mRNA_P-lacustris_contig109.747.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=681bp CNVPTPLLPSSISIVLGSKHGHHIHRHSLALLDMEKAPKRRNGWSEDIHVback to top mRNA from alignment at P-lacustris_contig109:222470..240819- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-lacustris_contig109.747.1 ID=mRNA_P-lacustris_contig109.747.1|Name=mRNA_P-lacustris_contig109.747.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=18350bp|location=Sequence derived from alignment at P-lacustris_contig109:222470..240819- (Pleurocladia lacustris SAG_25_93)back to top Coding sequence (CDS) from alignment at P-lacustris_contig109:222470..240819- >mRNA_P-lacustris_contig109.747.1 ID=mRNA_P-lacustris_contig109.747.1|Name=mRNA_P-lacustris_contig109.747.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=4086bp|location=Sequence derived from alignment at P-lacustris_contig109:222470..240819- (Pleurocladia lacustris SAG_25_93)back to top |