mRNA_P-lacustris_contig1072.640.1 (mRNA) Pleurocladia lacustris SAG_25_93

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-lacustris_contig1072.640.1
Unique NamemRNA_P-lacustris_contig1072.640.1
TypemRNA
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig1072.640.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig1072contigP-lacustris_contig1072:2905..4420 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size400
Cds size387
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig1072.640.1prot_P-lacustris_contig1072.640.1Pleurocladia lacustris SAG_25_93polypeptideP-lacustris_contig1072 2905..4408 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815347.3778026-CDS-P-lacustris_contig1072:2904..29811622815347.3778026-CDS-P-lacustris_contig1072:2904..2981Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1072 2905..2981 -
1693493491.1267724-CDS-P-lacustris_contig1072:2904..29811693493491.1267724-CDS-P-lacustris_contig1072:2904..2981Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1072 2905..2981 -
1622815347.3882802-CDS-P-lacustris_contig1072:3475..36761622815347.3882802-CDS-P-lacustris_contig1072:3475..3676Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1072 3476..3676 -
1693493491.1357837-CDS-P-lacustris_contig1072:3475..36761693493491.1357837-CDS-P-lacustris_contig1072:3475..3676Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1072 3476..3676 -
1622815347.5440605-CDS-P-lacustris_contig1072:4299..44081622815347.5440605-CDS-P-lacustris_contig1072:4299..4408Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1072 4300..4408 -
1693493491.1436653-CDS-P-lacustris_contig1072:4299..44081693493491.1436653-CDS-P-lacustris_contig1072:4299..4408Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1072 4300..4408 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815347.556013-UTR-P-lacustris_contig1072:4408..44201622815347.556013-UTR-P-lacustris_contig1072:4408..4420Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1072 4409..4420 -
1693493491.1515028-UTR-P-lacustris_contig1072:4408..44201693493491.1515028-UTR-P-lacustris_contig1072:4408..4420Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1072 4409..4420 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-lacustris_contig1072.640.1

>prot_P-lacustris_contig1072.640.1 ID=prot_P-lacustris_contig1072.640.1|Name=mRNA_P-lacustris_contig1072.640.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=129bp
MASLLGTPLPRSLQESCVGWLLLGKKGVVGGARSIMGKTAGNASWTAHTK
MVDEAEAHAAKRRAEEAHAAAPEEEREETAQVLEVATNRVELFKTANKHR
KKGGEDGVHKGTEGGTGSGYFGAEKKNAE
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mRNA from alignment at P-lacustris_contig1072:2905..4420-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-lacustris_contig1072.640.1 ID=mRNA_P-lacustris_contig1072.640.1|Name=mRNA_P-lacustris_contig1072.640.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=1516bp|location=Sequence derived from alignment at P-lacustris_contig1072:2905..4420- (Pleurocladia lacustris SAG_25_93)
GTCATTCTTACGATGGCGTCCTTGCTCGGAACACCCCTCCCGCGCTCGCT
CCAGGAATCCTGTGTTGGTTGGCTCCTCCTTGGGAAGAAAGGGGTGGTGG
GTGGAGCACGAAGCATCATGGGTACGCTCGGTGATGTTGATTTTGTCGTC
GTCTTTGTTTGCTGGCGTCTTTGTTTCGCTCGTTTGTTTTTTGTCGTCGT
CGTTGTTGCTGTTGTTGTTGTTGTTGATGATGATGTTGATGACTAGAGGG
CCTTGCTCTTGAACGATTTCGGTTGACTCGTTCCATAAGACTAGCTCGTG
TTGGCGCCATCCGTTTGCGGTGTCGCCATCCCGCCCGAAAGCCACGCCCC
CCCTGCCCCAGCTGGTTTACATCGGCAGAGATTGCTCGCGGGGGTTGTCA
AGTAGGACCAAGGCCTCATCGTTTCCGATGGCAGAGATCGCTCGAAACGT
TAGGTAGATGTGCCGGTGTGGAGGGGTGGTGTCGCTGTCTTTGTATAGGT
GCTACAGTCTAGATCTCGCTTTGGATCACATTCGGCGCCAATCGTTTGCA
ATCCGGCCATCCCCGCCCACCTGCCCCCGCCCCCTGCTCCCCATCATTTA
GATCGGCAGCGGTTGCTCGAAACGTTAGGTAGATGTGCCGGTGTGGAGGA
TTGTTGTTGTTGCTGGCGTCTATTTTCTTGTTTGTTTCTGTGTTAAGGAT
TGCTCTCGTTTCTCCTTGTTCGGTCCTCGTCTGCGCCATCGCAGGCAAAA
CCGCAGGCAACGCAAGCTGGACCGCCCACACGAAGATGGTGGACGAGGCG
GAGGCCCACGCAGCCAAGCGACGGGCTGAGGAGGCCCATGCTGCGGCGCC
GGAGGAGGAGAGGGAGGAGACGGCTCAAGTCCTGGAAGTAGCGACCAACC
GCGTGGAGCTGTTCAAGACCGCCAACAAGCACCGGAAGAAGGGCGGTAAG
ACTGCCGCCGACGTTGCATTCGTTCGGACTGGGATGACTTGGTGCTTGTT
GTTGTTGTTCTTTTTTTGTCGTCGTCGTTGTTGCTGTTCTCGTTGCCTGC
TGAAGTTGATGTCGCCGCGCGCCCAACGGGCCTCCCCTGCCGCAGCTCCC
TTGTGCCCCCCAGGCCCATCAGCTGTTTTCGATGTTGCTGTTCGTCTCGG
TGCTGCCTTTGGTGACCTTGATATCATCGCCGACGGTCGATCTCAGGTGG
CCCCCTTGGGTGGCAGTGGTTACAGTAGTGTCTTGGCGCCGATCGCCGCA
GTCGATTACCATCTTGATTCCAATCTCGAAAGCATTGACGCCCAACCGCA
GTCGATTACCATCTTGTTGGTTGTTGAGTTCACATTGGCTTCCTTTCCTT
CAAGACGAAGTGACCCTGACGCTTAGATTTTAATCGTCGAAAACCTCCGT
GCTTCATCCATCTCTCGTCTGACTCGTTGAATACCGAAGGCGAGGATGGA
GTCCATAAGGGGACGGAAGGGGGCACTGGCAGTGGCTACTTTGGTGCTGA
AAAAAAAAACGCGGAG
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Coding sequence (CDS) from alignment at P-lacustris_contig1072:2905..4420-

>mRNA_P-lacustris_contig1072.640.1 ID=mRNA_P-lacustris_contig1072.640.1|Name=mRNA_P-lacustris_contig1072.640.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=774bp|location=Sequence derived from alignment at P-lacustris_contig1072:2905..4420- (Pleurocladia lacustris SAG_25_93)
ATGGCGTCCTTGCTCGGAACACCCCTCCCGCGCTCGCTCCAGGAATCCTG
TGTTGGTTGGCTCCTCCTTGGGAAGAAAGGGGTGGTGGGTGGAGCACGAA
GCATCATGGATGGCGTCCTTGCTCGGAACACCCCTCCCGCGCTCGCTCCA
GGAATCCTGTGTTGGTTGGCTCCTCCTTGGGAAGAAAGGGGTGGTGGGTG
GAGCACGAAGCATCATGGGCAAAACCGCAGGCAACGCAAGCTGGACCGCC
CACACGAAGATGGTGGACGAGGCGGAGGCCCACGCAGCCAAGCGACGGGC
TGAGGAGGCCCATGCTGCGGCGCCGGAGGAGGAGAGGGAGGAGACGGCTC
AAGTCCTGGAAGTAGCGACCAACCGCGTGGAGCTGTTCAAGACCGCCAAC
AAGCACCGGAAGAAGGGCGGCAAAACCGCAGGCAACGCAAGCTGGACCGC
CCACACGAAGATGGTGGACGAGGCGGAGGCCCACGCAGCCAAGCGACGGG
CTGAGGAGGCCCATGCTGCGGCGCCGGAGGAGGAGAGGGAGGAGACGGCT
CAAGTCCTGGAAGTAGCGACCAACCGCGTGGAGCTGTTCAAGACCGCCAA
CAAGCACCGGAAGAAGGGCGGCGAGGATGGAGTCCATAAGGGGACGGAAG
GGGGCACTGGCAGTGGCTACTTTGGTGCTGAAAAAAAAAACGCGGAGGCG
AGGATGGAGTCCATAAGGGGACGGAAGGGGGCACTGGCAGTGGCTACTTT
GGTGCTGAAAAAAAAAACGCGGAG
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