prot_P-lacustris_contig1061.563.1 (polypeptide) Pleurocladia lacustris SAG_25_93

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-lacustris_contig1061.563.1
Unique Nameprot_P-lacustris_contig1061.563.1
Typepolypeptide
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Sequence length175
Homology
BLAST of mRNA_P-lacustris_contig1061.563.1 vs. uniprot
Match: A0A6H5KA78_9PHAE (TRASH domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KA78_9PHAE)

HSP 1 Score: 309 bits (791), Expect = 8.130e-106
Identity = 165/172 (95.93%), Postives = 169/172 (98.26%), Query Frame = 0
Query:    1 MVRIEVCYFCSSRIYPGHGIVFARNDSKVFRFCRSKCHKNFTRKRNPRKSKWTKAFRRAAGKEMSVDTTFDFEKRRNRPVKYDREAMGKTLLAMKKVKEVQAKREQRFFENRHRGALAKEKAAIKADIKDNIELLAPAAAVDREKILTAISDKAKQQKASAAASKARELMET 172
            MVRIE+CYFCSSRIYPGHGIVFARNDSKVFRFCRSKCHKNFTRKRNPRKSKWTKAFRRAAGKEMSVDTTFDFEKRRNRPVKYDREAMGKTLLAMKKVKEVQAKRE+RFFENRH+GALAKEKAAIKA+IKDNIELLAPAAAVDREK LTAISDKAKQ KASAAASKAR LMET
Sbjct:    1 MVRIEICYFCSSRIYPGHGIVFARNDSKVFRFCRSKCHKNFTRKRNPRKSKWTKAFRRAAGKEMSVDTTFDFEKRRNRPVKYDREAMGKTLLAMKKVKEVQAKREKRFFENRHKGALAKEKAAIKAEIKDNIELLAPAAAVDREKTLTAISDKAKQ-KASAAASKARTLMET 171          
BLAST of mRNA_P-lacustris_contig1061.563.1 vs. uniprot
Match: A0A835Z8F8_9STRA (RL30, ribosomal protein 30 60S large ribosomal subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8F8_9STRA)

HSP 1 Score: 228 bits (582), Expect = 7.270e-74
Identity = 115/167 (68.86%), Postives = 142/167 (85.03%), Query Frame = 0
Query:    1 MVRIEVCYFCSSRIYPGHGIVFARNDSKVFRFCRSKCHKNFTRKRNPRKSKWTKAFRRAAGKEMSVDTTFDFEKRRNRPVKYDREAMGKTLLAMKKVKEVQAKREQRFFENRHRGALAKEKAAIKADIKDNIELLAPAAAVDREKILTAISDKAKQQKASAAASKAR 167
            MVR+EVCYFCS  +YPGHG+ F RND+KVF+FCRSKCHKNF +KRNPRK KWTKA+R+AAGKEM+VDTTFDFEKRRNRPVKYDRE MGKTLLAMKKV EVQA+RE+RFF+ RH+   A+EKAAI+ +++ NIELL PAAA DREK L  + +  +Q+++  A ++A+
Sbjct:    1 MVRVEVCYFCSGPMYPGHGVQFVRNDAKVFKFCRSKCHKNFIKKRNPRKMKWTKAYRKAAGKEMTVDTTFDFEKRRNRPVKYDRELMGKTLLAMKKVTEVQAQREKRFFDVRHKDKAAREKAAIRTEVEQNIELLVPAAA-DREKALANVKEVIRQKESKNALTRAK 166          
BLAST of mRNA_P-lacustris_contig1061.563.1 vs. uniprot
Match: D7FZ76_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZ76_ECTSI)

HSP 1 Score: 214 bits (546), Expect = 4.780e-69
Identity = 127/172 (73.84%), Postives = 131/172 (76.16%), Query Frame = 0
Query:    1 MVRIEVCYFCSSRIYPGHGIVFARNDSKVFRFCRSKCHKNFTRKRNPRKSKWTKAFRRAAGKEMSVDTTFDFEKRRNRPVKYDREAMGKTLLAMKKVKEVQAKREQRFFENRHRGALAKEKAAIKADIKDNIELLAPAAAVDREKILTAISDKAKQQKASAAASKARELMET 172
            MVRIE+CYFCSSRIYPGHGIVFARNDSK                                      DTTFDFEKRRNRPVKYDREAMGKTLLAMKKVKEVQAKRE+RFFENRH+GALAKEKAAIKA+IKDNIELLAPAAAVDREK LTAISDKAKQ KASAAASKAR LMET
Sbjct:    1 MVRIEICYFCSSRIYPGHGIVFARNDSK--------------------------------------DTTFDFEKRRNRPVKYDREAMGKTLLAMKKVKEVQAKREKRFFENRHKGALAKEKAAIKAEIKDNIELLAPAAAVDREKTLTAISDKAKQ-KASAAASKARALMET 133          
BLAST of mRNA_P-lacustris_contig1061.563.1 vs. uniprot
Match: A0A4D9CSX3_9STRA (TRASH domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CSX3_9STRA)

HSP 1 Score: 201 bits (510), Expect = 7.810e-63
Identity = 97/154 (62.99%), Postives = 127/154 (82.47%), Query Frame = 0
Query:    2 VRIEVCYFCSSRIYPGHGIVFARNDSKVFRFCRSKCHKNFTRKRNPRKSKWTKAFRRAAGKEMSVDTTFDFEKRRNRPVKYDREAMGKTLLAMKKVKEVQAKREQRFFENRHRGALAKEKAAIKADIKDNIELLAPAAAVDREKILTAISDKAK 155
            +RI  CYFCS  +YPGHG  F RND+KVF FCRSKCH+NF +KRNPRK++WTKA+R+AAGKEM VD TFDFEKRRNRPVKYDR+ +GKT+ AM+K++ +Q++RE+ F++ R R A  KEKAA++ ++K+N+ELLAPAAA  REK+L  + +K K
Sbjct:    1 MRILKCYFCSGPMYPGHGTTFVRNDAKVFNFCRSKCHRNFNKKRNPRKARWTKAYRKAAGKEMVVDATFDFEKRRNRPVKYDRDLVGKTVQAMQKIRTIQSRREEVFYQTRMREAKMKEKAALQVEVKENVELLAPAAA-SREKVLLNVREKVK 153          
BLAST of mRNA_P-lacustris_contig1061.563.1 vs. uniprot
Match: A0A448YUA5_9STRA (TRASH domain-containing protein n=2 Tax=Pseudo-nitzschia TaxID=41953 RepID=A0A448YUA5_9STRA)

HSP 1 Score: 199 bits (507), Expect = 1.510e-62
Identity = 102/173 (58.96%), Postives = 134/173 (77.46%), Query Frame = 0
Query:    2 VRIEVCYFCSSRIYPGHGIVFARNDSKVFRFCRSKCHKNFTRKRNPRKSKWTKAFRRAAGKEMSVDTTFDFEKRRNRPVKYDREAMGKTLLAMKKVKEVQAKREQRFFENRHRGALAKEKAAIKADIKDNIELLAPAAAVDREKILTAISDKAKQQKASAAASKARELMETKG 174
            +RIE CYFCSS  YPGHGI F RNDSK FRFCRSKCH+NF +KRNPRK  WTKA+R+  GKEM+VD+TFDFEKRRNRPVKYDR+ MGKT+LAM++V+ ++  REQRFF+NR + + A++K   + +I+ +IELLAPA A +RE+++  + D AKQ+ A+   +  R+L    G
Sbjct:    1 MRIEKCYFCSSPCYPGHGITFVRNDSKQFRFCRSKCHRNFNKKRNPRKVAWTKAYRKTRGKEMAVDSTFDFEKRRNRPVKYDRDLMGKTILAMRRVESIKKAREQRFFDNRVKDSKAEKKQQARVEIEKSIELLAPAVA-NREQVMRNVIDSAKQRIAARKKTATRQLANDDG 172          
BLAST of mRNA_P-lacustris_contig1061.563.1 vs. uniprot
Match: W7T7Z2_9STRA (Ribosome biogenesis protein rlp24 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T7Z2_9STRA)

HSP 1 Score: 200 bits (509), Expect = 1.190e-61
Identity = 97/156 (62.18%), Postives = 128/156 (82.05%), Query Frame = 0
Query:    2 VRIEVCYFCSSRIYPGHGIVFARNDSKVFRFCRSKCHKNFTRKRNPRKSKWTKAFRRAAGKEMSVDTTFDFEKRRNRPVKYDREAMGKTLLAMKKVKEVQAKREQRFFENRHRGALAKEKAAIKADIKDNIELLAPAAAVDREKILTAISDKAKQQ 157
            +RI  CYFCS  +YPGHG  F RND+KVF FCRSKCH+NF +KRNPRK++WTKA+R+AAGKEM VD TFDFEKRRNRPVKYDR+ +GKT+ AM+K++ +Q++RE+ F++ R R A  KEKAA++ ++K+N+ELLAPAAA  REK L  + +K K++
Sbjct:   77 MRILKCYFCSGPMYPGHGTTFVRNDAKVFNFCRSKCHRNFNKKRNPRKTRWTKAYRKAAGKEMVVDATFDFEKRRNRPVKYDRDLVGKTVQAMQKIRTIQSRREEVFYQTRMREAKMKEKAALQVEVKENVELLAPAAA-SREKALLNVREKVKER 231          
BLAST of mRNA_P-lacustris_contig1061.563.1 vs. uniprot
Match: A0A6U3SB39_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6U3SB39_9STRA)

HSP 1 Score: 197 bits (500), Expect = 2.200e-61
Identity = 97/159 (61.01%), Postives = 129/159 (81.13%), Query Frame = 0
Query:    2 VRIEVCYFCSSRIYPGHGIVFARNDSKVFRFCRSKCHKNFTRKRNPRKSKWTKAFRRAAGKEMSVDTTFDFEKRRNRPVKYDREAMGKTLLAMKKVKEVQAKREQRFFENRHRGALAKEKAAIKADIKDNIELLAPAAAVDREKILTAISDKAKQQKAS 160
            +RIE CYFCSS  YPGHG+VF RNDSK FRFCRSKCH+NF +KRNPRK  WTKA+R+  GKE+++D+TF+FEKRRNRPVKYDR  MGKT+LAM++V+ ++ KRE+RFF NR + A  ++KA  + +I+  IELLAPA A +RE+++  + DKA+++ AS
Sbjct:    1 MRIEKCYFCSSPCYPGHGMVFVRNDSKQFRFCRSKCHRNFNKKRNPRKVAWTKAYRKTRGKELAIDSTFEFEKRRNRPVKYDRNLMGKTILAMQRVQAIKEKREERFFANRMKDAKKEQKAQARVEIEKGIELLAPAVA-NREEVMRNVVDKARERIAS 158          
BLAST of mRNA_P-lacustris_contig1061.563.1 vs. uniprot
Match: A0A1E7FH63_9STRA (60S ribosomal protein L24 n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FH63_9STRA)

HSP 1 Score: 196 bits (499), Expect = 3.320e-61
Identity = 98/154 (63.64%), Postives = 124/154 (80.52%), Query Frame = 0
Query:    2 VRIEVCYFCSSRIYPGHGIVFARNDSKVFRFCRSKCHKNFTRKRNPRKSKWTKAFRRAAGKEMSVDTTFDFEKRRNRPVKYDREAMGKTLLAMKKVKEVQAKREQRFFENRHRGALAKEKAAIKADIKDNIELLAPAAAVDREKILTAISDKAK 155
            +RIE CYFCSS  YPGHG+ F RNDSK FRFCRSKCH+NF +KRNPRK  WTKA+R+  GKEM+VD+TFDFEKRRNRPVKYDR+ MGKT+LAMK+V+ ++  RE+RFFENR   A A++K   + +I+ +IELLAPA A +RE+++  + D AK
Sbjct:    1 MRIEKCYFCSSPCYPGHGMTFVRNDSKQFRFCRSKCHRNFNKKRNPRKVAWTKAYRKTRGKEMAVDSTFDFEKRRNRPVKYDRDLMGKTILAMKRVETIKKAREERFFENRMSDAKAEKKKQARVEIEKSIELLAPAVA-NREQVMRNVIDSAK 153          
BLAST of mRNA_P-lacustris_contig1061.563.1 vs. uniprot
Match: A0A7S2DM88_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DM88_9STRA)

HSP 1 Score: 195 bits (496), Expect = 7.580e-61
Identity = 98/160 (61.25%), Postives = 127/160 (79.38%), Query Frame = 0
Query:    1 MVRIEVCYFCSSRIYPGHGIVFARNDSKVFRFCRSKCHKNFTRKRNPRKSKWTKAFRRAAGKEMSVDTTFDFEKRRNRPVKYDREAMGKTLLAMKKVKEVQAKREQRFFENRHRGALAKEKAAIKADIKDNIELLAPAAAVDREKILTAISDKAKQQKAS 160
            MVR+E CYFCS  +YPGHGI F RND+KVF+FCRSKCHKNF RKRNPRK+ WTKAFRRA  KEM+VD+T DFEKRRNRPVKYDRE +G TL AM++VKE+  +RE+ F+  R + +   ++ A K ++K+N+E+LAPAAA  +EK+L  I+D A+ + A+
Sbjct:    8 MVRVETCYFCSGPLYPGHGIQFVRNDAKVFKFCRSKCHKNFIRKRNPRKTAWTKAFRRARKKEMTVDSTLDFEKRRNRPVKYDRELVGTTLRAMQRVKEIHTRREEIFYAKRMKESKTIQRQAAKVELKENMEILAPAAA-QKEKVLLNIADHARVKAAA 166          
BLAST of mRNA_P-lacustris_contig1061.563.1 vs. uniprot
Match: A0A7S0PX55_9STRA (Hypothetical protein n=1 Tax=Asterionellopsis glacialis TaxID=33640 RepID=A0A7S0PX55_9STRA)

HSP 1 Score: 192 bits (487), Expect = 1.940e-59
Identity = 92/154 (59.74%), Postives = 124/154 (80.52%), Query Frame = 0
Query:    2 VRIEVCYFCSSRIYPGHGIVFARNDSKVFRFCRSKCHKNFTRKRNPRKSKWTKAFRRAAGKEMSVDTTFDFEKRRNRPVKYDREAMGKTLLAMKKVKEVQAKREQRFFENRHRGALAKEKAAIKADIKDNIELLAPAAAVDREKILTAISDKAK 155
            +R+E CYFCSS  YPGHG++F RNDSK FRFCRSKCH+NF +KRNPRK  WTKA+R+  GKEM++D+TF+FEKRRNRPVKYDR+ MGKT+LAM++V+ ++  RE+RFF NR + A A++K   + +I+ +IELLAPA A  RE+++  + D A+
Sbjct:    1 MRVEKCYFCSSPCYPGHGMMFVRNDSKTFRFCRSKCHRNFNKKRNPRKVAWTKAYRKTRGKEMAIDSTFEFEKRRNRPVKYDRDLMGKTILAMQRVQNIKENREERFFANRMKDAKAEKKQQARVEIEKSIELLAPAVA-SREQVMKNVVDSAR 153          
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig1061.563.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KA78_9PHAE8.130e-10695.93TRASH domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A835Z8F8_9STRA7.270e-7468.86RL30, ribosomal protein 30 60S large ribosomal sub... [more]
D7FZ76_ECTSI4.780e-6973.84Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A4D9CSX3_9STRA7.810e-6362.99TRASH domain-containing protein n=2 Tax=Monodopsid... [more]
A0A448YUA5_9STRA1.510e-6258.96TRASH domain-containing protein n=2 Tax=Pseudo-nit... [more]
W7T7Z2_9STRA1.190e-6162.18Ribosome biogenesis protein rlp24 n=1 Tax=Nannochl... [more]
A0A6U3SB39_9STRA2.200e-6161.01Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A1E7FH63_9STRA3.320e-6163.6460S ribosomal protein L24 n=1 Tax=Fragilariopsis c... [more]
A0A7S2DM88_9STRA7.580e-6161.25Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S0PX55_9STRA1.940e-5959.74Hypothetical protein n=1 Tax=Asterionellopsis glac... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011017TRASH domainSMARTSM007464TRASHcoord: 7..45
e-value: 5.3E-10
score: 49.2
IPR000988Ribosomal protein L24e-relatedPFAMPF01246Ribosomal_L24ecoord: 3..66
e-value: 2.7E-31
score: 107.6
IPR000988Ribosomal protein L24e-relatedPANTHERPTHR1079260S RIBOSOMAL PROTEIN L24coord: 3..153
IPR038630Ribosomal protein L24e/L24 superfamilyGENE3D2.30.170.20coord: 2..69
e-value: 3.3E-29
score: 102.7
NoneNo IPR availablePANTHERPTHR10792:SF8RIBOSOME BIOGENESIS PROTEIN RLP24-RELATEDcoord: 3..153
NoneNo IPR availableSUPERFAMILY57716Glucocorticoid receptor-like (DNA-binding domain)coord: 5..57
IPR023442Ribosomal protein L24e, conserved sitePROSITEPS01073RIBOSOMAL_L24Ecoord: 9..26

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig1061contigP-lacustris_contig1061:29099..33865 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig1061.563.1mRNA_P-lacustris_contig1061.563.1Pleurocladia lacustris SAG_25_93mRNAP-lacustris_contig1061 29099..34071 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-lacustris_contig1061.563.1 ID=prot_P-lacustris_contig1061.563.1|Name=mRNA_P-lacustris_contig1061.563.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=175bp
MVRIEVCYFCSSRIYPGHGIVFARNDSKVFRFCRSKCHKNFTRKRNPRKS
KWTKAFRRAAGKEMSVDTTFDFEKRRNRPVKYDREAMGKTLLAMKKVKEV
QAKREQRFFENRHRGALAKEKAAIKADIKDNIELLAPAAAVDREKILTAI
SDKAKQQKASAAASKARELMETKG*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011017TRASH_dom
IPR000988Ribosomal_L24e-rel
IPR038630L24e/L24_sf
IPR023442Ribosomal_L24e_CS