mRNA_P-lacustris_contig1061.563.1 (mRNA) Pleurocladia lacustris SAG_25_93

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-lacustris_contig1061.563.1
Unique NamemRNA_P-lacustris_contig1061.563.1
TypemRNA
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Homology
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BLAST of mRNA_P-lacustris_contig1061.563.1 vs. uniprot
Match: A0A6H5KA78_9PHAE (TRASH domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KA78_9PHAE)

HSP 1 Score: 309 bits (792), Expect = 8.350e-105
Identity = 165/172 (95.93%), Postives = 169/172 (98.26%), Query Frame = 3 
Query:  207 MVRIEVCYFCSSRIYPGHGIVFARNDSKVFRFCRSKCHKNFTRKRNPRKSKWTKAFRRAAGKEMSVDTTFDFEKRRNRPVKYDREAMGKTLLAMKKVKEVQAKREQRFFENRHRGALAKEKAAIKADIKDNIELLAPAAAVDREKILTAISDKAKQQKASAAASKARELMET 722
            MVRIE+CYFCSSRIYPGHGIVFARNDSKVFRFCRSKCHKNFTRKRNPRKSKWTKAFRRAAGKEMSVDTTFDFEKRRNRPVKYDREAMGKTLLAMKKVKEVQAKRE+RFFENRH+GALAKEKAAIKA+IKDNIELLAPAAAVDREK LTAISDKAKQ KASAAASKAR LMET
Sbjct:    1 MVRIEICYFCSSRIYPGHGIVFARNDSKVFRFCRSKCHKNFTRKRNPRKSKWTKAFRRAAGKEMSVDTTFDFEKRRNRPVKYDREAMGKTLLAMKKVKEVQAKREKRFFENRHKGALAKEKAAIKAEIKDNIELLAPAAAVDREKTLTAISDKAKQ-KASAAASKARTLMET 171
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BLAST of mRNA_P-lacustris_contig1061.563.1 vs. uniprot
Match: A0A835Z8F8_9STRA (RL30, ribosomal protein 30 60S large ribosomal subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8F8_9STRA)

HSP 1 Score: 229 bits (583), Expect = 6.580e-73
Identity = 115/167 (68.86%), Postives = 142/167 (85.03%), Query Frame = 3 
Query:  207 MVRIEVCYFCSSRIYPGHGIVFARNDSKVFRFCRSKCHKNFTRKRNPRKSKWTKAFRRAAGKEMSVDTTFDFEKRRNRPVKYDREAMGKTLLAMKKVKEVQAKREQRFFENRHRGALAKEKAAIKADIKDNIELLAPAAAVDREKILTAISDKAKQQKASAAASKAR 707
            MVR+EVCYFCS  +YPGHG+ F RND+KVF+FCRSKCHKNF +KRNPRK KWTKA+R+AAGKEM+VDTTFDFEKRRNRPVKYDRE MGKTLLAMKKV EVQA+RE+RFF+ RH+   A+EKAAI+ +++ NIELL PAAA DREK L  + +  +Q+++  A ++A+
Sbjct:    1 MVRVEVCYFCSGPMYPGHGVQFVRNDAKVFKFCRSKCHKNFIKKRNPRKMKWTKAYRKAAGKEMTVDTTFDFEKRRNRPVKYDRELMGKTLLAMKKVTEVQAQREKRFFDVRHKDKAAREKAAIRTEVEQNIELLVPAAA-DREKALANVKEVIRQKESKNALTRAK 166
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BLAST of mRNA_P-lacustris_contig1061.563.1 vs. uniprot
Match: D7FZ76_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZ76_ECTSI)

HSP 1 Score: 215 bits (547), Expect = 4.190e-68
Identity = 127/172 (73.84%), Postives = 131/172 (76.16%), Query Frame = 3 
Query:  207 MVRIEVCYFCSSRIYPGHGIVFARNDSKVFRFCRSKCHKNFTRKRNPRKSKWTKAFRRAAGKEMSVDTTFDFEKRRNRPVKYDREAMGKTLLAMKKVKEVQAKREQRFFENRHRGALAKEKAAIKADIKDNIELLAPAAAVDREKILTAISDKAKQQKASAAASKARELMET 722
            MVRIE+CYFCSSRIYPGHGIVFARNDSK                                      DTTFDFEKRRNRPVKYDREAMGKTLLAMKKVKEVQAKRE+RFFENRH+GALAKEKAAIKA+IKDNIELLAPAAAVDREK LTAISDKAKQ KASAAASKAR LMET
Sbjct:    1 MVRIEICYFCSSRIYPGHGIVFARNDSK--------------------------------------DTTFDFEKRRNRPVKYDREAMGKTLLAMKKVKEVQAKREKRFFENRHKGALAKEKAAIKAEIKDNIELLAPAAAVDREKTLTAISDKAKQ-KASAAASKARALMET 133
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BLAST of mRNA_P-lacustris_contig1061.563.1 vs. uniprot
Match: A0A4D9CSX3_9STRA (TRASH domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CSX3_9STRA)

HSP 1 Score: 201 bits (511), Expect = 6.610e-62
Identity = 97/154 (62.99%), Postives = 127/154 (82.47%), Query Frame = 3 
Query:  210 VRIEVCYFCSSRIYPGHGIVFARNDSKVFRFCRSKCHKNFTRKRNPRKSKWTKAFRRAAGKEMSVDTTFDFEKRRNRPVKYDREAMGKTLLAMKKVKEVQAKREQRFFENRHRGALAKEKAAIKADIKDNIELLAPAAAVDREKILTAISDKAK 671
            +RI  CYFCS  +YPGHG  F RND+KVF FCRSKCH+NF +KRNPRK++WTKA+R+AAGKEM VD TFDFEKRRNRPVKYDR+ +GKT+ AM+K++ +Q++RE+ F++ R R A  KEKAA++ ++K+N+ELLAPAAA  REK+L  + +K K
Sbjct:    1 MRILKCYFCSGPMYPGHGTTFVRNDAKVFNFCRSKCHRNFNKKRNPRKARWTKAYRKAAGKEMVVDATFDFEKRRNRPVKYDRDLVGKTVQAMQKIRTIQSRREEVFYQTRMREAKMKEKAALQVEVKENVELLAPAAA-SREKVLLNVREKVK 153
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BLAST of mRNA_P-lacustris_contig1061.563.1 vs. uniprot
Match: A0A448YUA5_9STRA (TRASH domain-containing protein n=2 Tax=Pseudo-nitzschia TaxID=41953 RepID=A0A448YUA5_9STRA)

HSP 1 Score: 200 bits (508), Expect = 1.280e-61
Identity = 102/173 (58.96%), Postives = 134/173 (77.46%), Query Frame = 3 
Query:  210 VRIEVCYFCSSRIYPGHGIVFARNDSKVFRFCRSKCHKNFTRKRNPRKSKWTKAFRRAAGKEMSVDTTFDFEKRRNRPVKYDREAMGKTLLAMKKVKEVQAKREQRFFENRHRGALAKEKAAIKADIKDNIELLAPAAAVDREKILTAISDKAKQQKASAAASKARELMETKG 728
            +RIE CYFCSS  YPGHGI F RNDSK FRFCRSKCH+NF +KRNPRK  WTKA+R+  GKEM+VD+TFDFEKRRNRPVKYDR+ MGKT+LAM++V+ ++  REQRFF+NR + + A++K   + +I+ +IELLAPA A +RE+++  + D AKQ+ A+   +  R+L    G
Sbjct:    1 MRIEKCYFCSSPCYPGHGITFVRNDSKQFRFCRSKCHRNFNKKRNPRKVAWTKAYRKTRGKEMAVDSTFDFEKRRNRPVKYDRDLMGKTILAMRRVESIKKAREQRFFDNRVKDSKAEKKQQARVEIEKSIELLAPAVA-NREQVMRNVIDSAKQRIAARKKTATRQLANDDG 172
[Close]
BLAST of mRNA_P-lacustris_contig1061.563.1 vs. uniprot
Match: W7T7Z2_9STRA (Ribosome biogenesis protein rlp24 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T7Z2_9STRA)

HSP 1 Score: 201 bits (510), Expect = 1.010e-60
Identity = 97/156 (62.18%), Postives = 128/156 (82.05%), Query Frame = 3 
Query:  210 VRIEVCYFCSSRIYPGHGIVFARNDSKVFRFCRSKCHKNFTRKRNPRKSKWTKAFRRAAGKEMSVDTTFDFEKRRNRPVKYDREAMGKTLLAMKKVKEVQAKREQRFFENRHRGALAKEKAAIKADIKDNIELLAPAAAVDREKILTAISDKAKQQ 677
            +RI  CYFCS  +YPGHG  F RND+KVF FCRSKCH+NF +KRNPRK++WTKA+R+AAGKEM VD TFDFEKRRNRPVKYDR+ +GKT+ AM+K++ +Q++RE+ F++ R R A  KEKAA++ ++K+N+ELLAPAAA  REK L  + +K K++
Sbjct:   77 MRILKCYFCSGPMYPGHGTTFVRNDAKVFNFCRSKCHRNFNKKRNPRKTRWTKAYRKAAGKEMVVDATFDFEKRRNRPVKYDRDLVGKTVQAMQKIRTIQSRREEVFYQTRMREAKMKEKAALQVEVKENVELLAPAAA-SREKALLNVREKVKER 231
[Close]
BLAST of mRNA_P-lacustris_contig1061.563.1 vs. uniprot
Match: A0A6U3SB39_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6U3SB39_9STRA)

HSP 1 Score: 197 bits (501), Expect = 1.840e-60
Identity = 97/159 (61.01%), Postives = 129/159 (81.13%), Query Frame = 3 
Query:  210 VRIEVCYFCSSRIYPGHGIVFARNDSKVFRFCRSKCHKNFTRKRNPRKSKWTKAFRRAAGKEMSVDTTFDFEKRRNRPVKYDREAMGKTLLAMKKVKEVQAKREQRFFENRHRGALAKEKAAIKADIKDNIELLAPAAAVDREKILTAISDKAKQQKAS 686
            +RIE CYFCSS  YPGHG+VF RNDSK FRFCRSKCH+NF +KRNPRK  WTKA+R+  GKE+++D+TF+FEKRRNRPVKYDR  MGKT+LAM++V+ ++ KRE+RFF NR + A  ++KA  + +I+  IELLAPA A +RE+++  + DKA+++ AS
Sbjct:    1 MRIEKCYFCSSPCYPGHGMVFVRNDSKQFRFCRSKCHRNFNKKRNPRKVAWTKAYRKTRGKELAIDSTFEFEKRRNRPVKYDRNLMGKTILAMQRVQAIKEKREERFFANRMKDAKKEQKAQARVEIEKGIELLAPAVA-NREEVMRNVVDKARERIAS 158
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BLAST of mRNA_P-lacustris_contig1061.563.1 vs. uniprot
Match: A0A1E7FH63_9STRA (60S ribosomal protein L24 n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FH63_9STRA)

HSP 1 Score: 197 bits (500), Expect = 2.780e-60
Identity = 98/154 (63.64%), Postives = 124/154 (80.52%), Query Frame = 3 
Query:  210 VRIEVCYFCSSRIYPGHGIVFARNDSKVFRFCRSKCHKNFTRKRNPRKSKWTKAFRRAAGKEMSVDTTFDFEKRRNRPVKYDREAMGKTLLAMKKVKEVQAKREQRFFENRHRGALAKEKAAIKADIKDNIELLAPAAAVDREKILTAISDKAK 671
            +RIE CYFCSS  YPGHG+ F RNDSK FRFCRSKCH+NF +KRNPRK  WTKA+R+  GKEM+VD+TFDFEKRRNRPVKYDR+ MGKT+LAMK+V+ ++  RE+RFFENR   A A++K   + +I+ +IELLAPA A +RE+++  + D AK
Sbjct:    1 MRIEKCYFCSSPCYPGHGMTFVRNDSKQFRFCRSKCHRNFNKKRNPRKVAWTKAYRKTRGKEMAVDSTFDFEKRRNRPVKYDRDLMGKTILAMKRVETIKKAREERFFENRMSDAKAEKKKQARVEIEKSIELLAPAVA-NREQVMRNVIDSAK 153
[Close]
BLAST of mRNA_P-lacustris_contig1061.563.1 vs. uniprot
Match: A0A7S2DM88_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DM88_9STRA)

HSP 1 Score: 196 bits (497), Expect = 6.310e-60
Identity = 98/160 (61.25%), Postives = 127/160 (79.38%), Query Frame = 3 
Query:  207 MVRIEVCYFCSSRIYPGHGIVFARNDSKVFRFCRSKCHKNFTRKRNPRKSKWTKAFRRAAGKEMSVDTTFDFEKRRNRPVKYDREAMGKTLLAMKKVKEVQAKREQRFFENRHRGALAKEKAAIKADIKDNIELLAPAAAVDREKILTAISDKAKQQKAS 686
            MVR+E CYFCS  +YPGHGI F RND+KVF+FCRSKCHKNF RKRNPRK+ WTKAFRRA  KEM+VD+T DFEKRRNRPVKYDRE +G TL AM++VKE+  +RE+ F+  R + +   ++ A K ++K+N+E+LAPAAA  +EK+L  I+D A+ + A+
Sbjct:    8 MVRVETCYFCSGPLYPGHGIQFVRNDAKVFKFCRSKCHKNFIRKRNPRKTAWTKAFRRARKKEMTVDSTLDFEKRRNRPVKYDRELVGTTLRAMQRVKEIHTRREEIFYAKRMKESKTIQRQAAKVELKENMEILAPAAA-QKEKVLLNIADHARVKAAA 166
[Close]
BLAST of mRNA_P-lacustris_contig1061.563.1 vs. uniprot
Match: A0A7S0PX55_9STRA (Hypothetical protein n=1 Tax=Asterionellopsis glacialis TaxID=33640 RepID=A0A7S0PX55_9STRA)

HSP 1 Score: 192 bits (488), Expect = 1.600e-58
Identity = 92/154 (59.74%), Postives = 124/154 (80.52%), Query Frame = 3 
Query:  210 VRIEVCYFCSSRIYPGHGIVFARNDSKVFRFCRSKCHKNFTRKRNPRKSKWTKAFRRAAGKEMSVDTTFDFEKRRNRPVKYDREAMGKTLLAMKKVKEVQAKREQRFFENRHRGALAKEKAAIKADIKDNIELLAPAAAVDREKILTAISDKAK 671
            +R+E CYFCSS  YPGHG++F RNDSK FRFCRSKCH+NF +KRNPRK  WTKA+R+  GKEM++D+TF+FEKRRNRPVKYDR+ MGKT+LAM++V+ ++  RE+RFF NR + A A++K   + +I+ +IELLAPA A  RE+++  + D A+
Sbjct:    1 MRVEKCYFCSSPCYPGHGMMFVRNDSKTFRFCRSKCHRNFNKKRNPRKVAWTKAYRKTRGKEMAIDSTFEFEKRRNRPVKYDRDLMGKTILAMQRVQNIKENREERFFANRMKDAKAEKKQQARVEIEKSIELLAPAVA-SREQVMKNVVDSAR 153
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig1061.563.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KA78_9PHAE8.350e-10595.93TRASH domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A835Z8F8_9STRA6.580e-7368.86RL30, ribosomal protein 30 60S large ribosomal sub... [more]
D7FZ76_ECTSI4.190e-6873.84Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A4D9CSX3_9STRA6.610e-6262.99TRASH domain-containing protein n=2 Tax=Monodopsid... [more]
A0A448YUA5_9STRA1.280e-6158.96TRASH domain-containing protein n=2 Tax=Pseudo-nit... [more]
W7T7Z2_9STRA1.010e-6062.18Ribosome biogenesis protein rlp24 n=1 Tax=Nannochl... [more]
A0A6U3SB39_9STRA1.840e-6061.01Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A1E7FH63_9STRA2.780e-6063.6460S ribosomal protein L24 n=1 Tax=Fragilariopsis c... [more]
A0A7S2DM88_9STRA6.310e-6061.25Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S0PX55_9STRA1.600e-5859.74Hypothetical protein n=1 Tax=Asterionellopsis glac... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig1061contigP-lacustris_contig1061:29099..34071 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score217.6
Seed ortholog evalue4.5e-54
Seed eggNOG ortholog2880.D7FZ76
Preferred nameRSL24D1
KEGG koko:K02896
KEGG Pathwayko03010,map03010
KEGG ModuleM00177,M00179
Hectar predicted targeting categoryother localisation
GOsGO:0000027,GO:0001671,GO:0002181,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0006996,GO:0008047,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0016043,GO:0019538,GO:0022607,GO:0022613,GO:0022618,GO:0022625,GO:0022626,GO:0030234,GO:0030684,GO:0030687,GO:0031974,GO:0031981,GO:0032781,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0042254,GO:0042255,GO:0042273,GO:0043043,GO:0043085,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043462,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044093,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0050790,GO:0051336,GO:0051345,GO:0060589,GO:0060590,GO:0065003,GO:0065007,GO:0065009,GO:0070013,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0097159,GO:0098772,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1902626,GO:1990904
EggNOG free text desc.assembly of large subunit precursor of preribosome
EggNOG OGsCOG2075@1,KOG1723@2759
Ec32 ortholog descriptionRibosomal protein L24e-related
Ec32 orthologEc-13_002830.1
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Exons5
Model size731
Cds size525
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig1061.563.1prot_P-lacustris_contig1061.563.1Pleurocladia lacustris SAG_25_93polypeptideP-lacustris_contig1061 29099..33865 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815332.6499863-CDS-P-lacustris_contig1061:29098..291551622815332.6499863-CDS-P-lacustris_contig1061:29098..29155Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1061 29099..29155 -
1693493482.260119-CDS-P-lacustris_contig1061:29098..291551693493482.260119-CDS-P-lacustris_contig1061:29098..29155Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1061 29099..29155 -
1622815332.6614141-CDS-P-lacustris_contig1061:30050..302301622815332.6614141-CDS-P-lacustris_contig1061:30050..30230Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1061 30051..30230 -
1693493482.2744274-CDS-P-lacustris_contig1061:30050..302301693493482.2744274-CDS-P-lacustris_contig1061:30050..30230Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1061 30051..30230 -
1622815332.6724753-CDS-P-lacustris_contig1061:31651..317411622815332.6724753-CDS-P-lacustris_contig1061:31651..31741Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1061 31652..31741 -
1693493482.283233-CDS-P-lacustris_contig1061:31651..317411693493482.283233-CDS-P-lacustris_contig1061:31651..31741Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1061 31652..31741 -
1622815332.688797-CDS-P-lacustris_contig1061:32556..326701622815332.688797-CDS-P-lacustris_contig1061:32556..32670Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1061 32557..32670 -
1693493482.2912624-CDS-P-lacustris_contig1061:32556..326701693493482.2912624-CDS-P-lacustris_contig1061:32556..32670Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1061 32557..32670 -
1622815332.7033024-CDS-P-lacustris_contig1061:33781..338651622815332.7033024-CDS-P-lacustris_contig1061:33781..33865Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1061 33782..33865 -
1693493482.2991703-CDS-P-lacustris_contig1061:33781..338651693493482.2991703-CDS-P-lacustris_contig1061:33781..33865Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1061 33782..33865 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815332.7165856-UTR-P-lacustris_contig1061:33865..340711622815332.7165856-UTR-P-lacustris_contig1061:33865..34071Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1061 33866..34071 -
1693493482.3082654-UTR-P-lacustris_contig1061:33865..340711693493482.3082654-UTR-P-lacustris_contig1061:33865..34071Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1061 33866..34071 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-lacustris_contig1061.563.1

>prot_P-lacustris_contig1061.563.1 ID=prot_P-lacustris_contig1061.563.1|Name=mRNA_P-lacustris_contig1061.563.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=175bp
MVRIEVCYFCSSRIYPGHGIVFARNDSKVFRFCRSKCHKNFTRKRNPRKS
KWTKAFRRAAGKEMSVDTTFDFEKRRNRPVKYDREAMGKTLLAMKKVKEV
QAKREQRFFENRHRGALAKEKAAIKADIKDNIELLAPAAAVDREKILTAI
SDKAKQQKASAAASKARELMETKG*
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mRNA from alignment at P-lacustris_contig1061:29099..34071-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-lacustris_contig1061.563.1 ID=mRNA_P-lacustris_contig1061.563.1|Name=mRNA_P-lacustris_contig1061.563.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=4973bp|location=Sequence derived from alignment at P-lacustris_contig1061:29099..34071- (Pleurocladia lacustris SAG_25_93)
CCTCGCCTTGTGACTGGAGAAAGCCCCCCTCGTTGTTTATTGAGTGGTGA
AGGCGGCTGTCGCTGAACCCAGCAGCAGCTTTCCACATTTCCACAGTTTC
AGGGCACGCGCGACACAGCGGAACACAAGGAAAGAGGGAAGACCACTTAA
AGCCAGGGACACCCAGCAGTTCTTGAGGACGCGGTCGCGGCTGCTGCGCT
TTTAGGATGGTGCGAATAGAGGTCTGTTACTTTTGCTCCAGCCGGATCTA
CCCCGGCCATGGGATCGTCTTCGCTCGCAACGACTCGAAGGTGTGATGGT
GCCGGTGTGGCAAGCCTTTCTCGCTTTGGTCCAAGCATATCGTGCCCTCG
TTTTTATTTGTCTGTGGGTCGTAGCAGCTCGGACTACTGCCGTGTGGCAT
ACGCAGACAGCAGTTGCAACATGTATTTGAACCTGCTGATTTTGGGTGGG
TGCAATATAACGAAATACTCGTGGAGTCTGCAACACCACCACCCCCGCAT
GGTCGAAGCTCCCTTCCGCCCCCCCATCCCCCTGCCTTTCGCTCTGTGTG
ACAGAGTATGCTCCAAACGCACGGGGGGAAATCCCAACAAATTCCAGGGG
TTCTTGGCACCGCATGTCCTTACCTGTTTTACCATGATATTCATCCTACC
CCCTCCAATGCTCTCCTTTTGGAGAAATCGAGGGAAACATGAAACATGCA
CAGAGCGCCAAGGACGCGGTGTGGATTCCGGCCCGCGAGGATGTGTGCGG
GCGGCCCGGTAGTATTAACGGGGAAAGCCTGCTTCATGTAGACAACAGAG
AATGGCTCTCAAAGACTGATGGTCGATGATCACGTACAAGATGAGATATC
AACCTGTTCTACAACACGCAACACGACCGTGTGATAGGTCCAGCCCCGCT
GCGATGCACGGGGAGCGTACCGATGGTTTTGCACCAATCAACCCCGAAAC
AGAGATGGTTTGTTCCTTCGTGAAAGAAAGCGCTTGTCGCCGAGAGCTGT
TTTTTCGGTGTCTTGGTTTTGCATCCTTCAGCAGCGAGAGATTTTCTGCC
GCATTCGCAAACGATCACGCGCGCGTCCCGCATATGCCTCATTTTGATGG
GTGTCGTTGATTGGCCTGACGAGCAGCGGCCACCTCTCCAAACTCGGCTT
TGCCTTGCTTTTTTGGCTAGAAACTTTTGCACTTAACGCCGACCTCCTAG
CTGCCTGTCCTTGTTACCATCCAGCCCCCACCAATACCCCCTCCCTCCCC
CCCGGGTGAGCCCCTGCGCACTCCATACCTTGAAACGCAGCAGCCAGGGA
AGACGCCCAAAGTCTCCCCAGAAACGTTGCGTCGGCGTTCTATTATCGAA
CCCTCAAATGATGCCATCCATATTAACCCCCTCCCCCGAACGACGAAAAA
GGTATTTCGATTCTGCCGTTCCAAGTGTCACAAGAACTTCACCCGGAAGA
GAAACCCGAGGAAGTCAAAATGGACCAAGGCCTTCCGGCGAGCGGCCGGC
AAGGAGATGTCGGTGGTGCGTGATTGGGATTGTGCTTCTTGTCATATACA
CGTGGTTTCCATGTTCGATGCCTCCTGCGGTAACTGCGGCGAGCGATAGC
GCACTACTCAGAACAACCGCTACTTTCTAGCAAACGTTCGATTGCGCGTG
CTCGAAGTGTTGATGGTCCACTCGTGTATGATAACATCTAGCCGCTTACC
TCGCTGCTGTTGCGACCGTCCAGCGAGTTTGGCCACCGGTCCCGGGATAG
ACCCCAACAAAGAACTGCACGTTGCTTTAGCTCTCTATTTGTCTTGCACA
ACGGCGCAGCAAGAATTTCAATCTGGGTGTCCCTCAAACATGTTACGGCT
CAGCCCTGCCGGTAAATTGGCATCGCGGCGTTCGTTGCGGGTCCGCGACT
CGACTCTACGCGAGGTATCATTGAAACTTTCCCGCAACCATTGGGGAAGG
CCTCTTGAGGAGAAAACCCAGCCCCCTCTTTTGCCGTCGTGCGCGAAAAT
CGAATGTACTAGACTTGAGGTTTCGGATTTATGACTAGGCCCAGCTGTTG
CTTCCGAACATAATCGACGAAAGATTTTTGGGGTTGCGGAGGCCTGCGAA
GGCCTACGAGACGCAGCCCTCAGGCCTGTTCACAACAGCGCTGCCGGGTG
TCGTTTTTTGAGAGGTTCTGAGTGGTTCGCGTTCAGAACCACCGTTTTCG
CCCGAACGTACCCCGCAAATAGAATTGGAACTGTCAAGATTGCGAAGAAA
GATTGTTTGGTTGTTTGTCAGGATGAGGCAGAGAACGCCACCCCCGTGTT
TGCTGCCCCGGTGTTTCGTTGGCCAATCAGGACACGACGTTCGACTTCGA
GAAGCGGCGGAATAGGCCAGTCAAGTACGACAGGGAGGCTATGGGGAAGA
CTCTCCTTGCAATGAAGAAGGTGCTGCAAACTTGCGAATTTTTGTTGTCG
TTGTCGCATTATAGTCCGCTCCGTTCGCTGCTCAGTACCTCCTGTCGTTA
GTAGTGGTCCAACTGATGCGGTCACAGGCGGTATATGAGAGGACAAAAAT
AGAAAAATGGAGTACCCAGAAAGTCAACACCCGTAGGCGCGATTTTTTTT
TTTCGAGATAAACGATGAACGCGTACAAATCTGGCACCAGTTGAGCTGTT
TCGACACGGATGTTTAATCATGACGTCTACTCGAGGATATTTGTCCTGGG
CAGTTTCGGAGTGTTTGCGTCAAATGTCGAGCGGTCAAGCTGATTACAGC
GCTAACTATGCCACGGGATAATACTGAATATTTTATTTCCAGCTGAGCAT
TATTATTACTAGCGGTTGGTGTTTTGGTATTTTGATAAGTTACAAGCACG
GCGGTCGTTTCGCCTTCTCTGTTGTGTTTACAGCCTCAAATTCGTGTGGT
TTGGTTTGCGTGTCGTGGTTTGGTGTGACACTTGTCCAGTCATGCAGTAA
CAGCTGTGAAGGCGAGTGAAGGCAAACGACACGGGGTAGGATAAATTTTT
TCGGGAAGCGCGAAATCTCGGTCTTGTCGATGTCGGTTCTTGATTCACGA
ACCGTCTGGGAGTGTGAACCAATCATGGGAAACAGTGTTGCAACCATAGC
AGTTTAGTATGGTGACCTCCCAGGAGACAACCGTACCTCTGCTTCCGTCT
TCGGAAACCCCGCCCTGCTGGAATCCCACCGTGCGGACCAATTGCAACGA
ACTCTTTTCCGCTAGAAAAACGAATCATCATATACTTCGCGTATTCGCCC
TGCCCCGTAGCTCAGTTGTTTAAACGCGAAACATCTGGCGGCTAGGTCGC
GGGTTTAATTCTCGTCGTGTCTAGCAGTGAAAAGCGATTATTTACTTAAT
TCGTGAGTAAACACAATTCGATTTAGATCGACGAGGAAAAGGGACGGCTG
AACCCTTCTCGCGATAAAAATGAAGGCATGTACCGCAGGAGGGCGGGTGG
GGGGTCAGGAAGAGGAAACCTTCTGTGTGACCCCGGCTAGGTGCCGTCCT
CCGCATCGCCGAAAGGGGTAAAGAAGGCTCGCATCCAGAATAGATGAGAT
GAAAAATAAATAAATACAAATAAATAAATAAATTTGGGGACCTATGACGG
CACAGCGCAAGTGCTGGTACACTCTTGTTTACTTTACAAGTATTTTTCTG
CCGACAAGTCAAGACGAATCGGTCTCATGAAACACTCGCAACATCTCAGC
CGACCAATTTTCAAAACAATACGTTCGCACGTCCTGTTGGCTGGAGAATC
TAGTGAAACAATCAGCTCGCGAAAGATCCCAACCATTGCAGAACCAACCG
TCCAACCAACCAATCAAAACGGGCGCAAATGAACCGTTCAGGTGAAGGAG
GTGCAAGCGAAGCGGGAGCAACGCTTCTTCGAGAACCGGCACCGGGGTGC
GCTGGCGAAGGAGAAGGCGGCTATCAAGGCCGATATCAAGGACAACATCG
AACTGCTCGCTCCGGCCGCGGCGGTGGACAGGGAGAAGATCCTCACGGCC
ATCTCGGACAAAGCCAAACAGGTGCTGCTATTTGTTGTTAAGATCGTGTG
GAGGTTGCCAACCGGTCTTTCTGTTACCATGCCAATCGGTAGACAGCAGT
TGCCTCACCTTCCGCCACCCCCCAAAGCCTTAAATTAAAGTCTTCGCGCC
ACGAAGATGTGATATATGATACTGTATGATGTGTGGTGTTCTTCGCCGAG
CTTGTCGTACTATGTAACTCCAATATCCCAACTTATCCACCTTAGCATTA
GATCGAGGGTTCTGGGTCAAAGCCAAACCAGCTGTGCGAAGTTTCATTGA
CGAGTACACGTGTGTTTCGTAGCATACCTCCCCCTCCCCCTCCAGTACCC
TCTCCTCTCTGCGACGATTCCCTGTCTTGGTTTCTTCGCAGGGGAGGCAT
TGTTTTCTTTTTTGCTGCTATAAAGAGCCCCCGAACAAGTCGTTGTTCCA
GCATGGCCACGGTTTTCCGTCGCGCAAGAAACTGGCTGCCGAAGAGTGCG
GCCTAGTTATTTTGGTCGTCGTTTTTTTTCACGTTCCCTCATGGCGAAAA
ATCTAGCCCCAGGTCACAAATCAGGCATCCGAGGTGTGTATGTTGTGTGT
GTGTGTGTGTGTTTTTTTTTTCTTGTGTATCAACACGCCTCAACCGGACC
AACGGGACACGCCGGTGCTAAGCATAGCAAGTGGGACAAACAGCGCAGAA
GCGCTTTGTAGTTCGCCGGTGGGGGGTCGGAGGAGGAGACTGGACTCAAG
TTGCGGGTCCGACTTGCCGCATGTCACCCCTCCCGGTAGCACGGCACACC
GATGTGCTCCCTAGGTGGGCGAGAGGCGTTCCCCTCCTCCTGCTCGTCCT
TCCCCCTTGACGTGAGTGCAGAAATGCAACAAATGAACATGCCCCCCTTT
TTTTCATCTCCTGGAGCAGAAAGCCTCCGCGGCAGCGTCGAAGGCAAGAG
AGCTCATGGAGACGAAGGGCTAA
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Coding sequence (CDS) from alignment at P-lacustris_contig1061:29099..34071-

>mRNA_P-lacustris_contig1061.563.1 ID=mRNA_P-lacustris_contig1061.563.1|Name=mRNA_P-lacustris_contig1061.563.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=1050bp|location=Sequence derived from alignment at P-lacustris_contig1061:29099..34071- (Pleurocladia lacustris SAG_25_93)
ATGGTGCGAATAGAGGTCTGTTACTTTTGCTCCAGCCGGATCTACCCCGG
CCATGGGATCGTCTTCGCTCGCAACGACTCGAAGATGGTGCGAATAGAGG
TCTGTTACTTTTGCTCCAGCCGGATCTACCCCGGCCATGGGATCGTCTTC
GCTCGCAACGACTCGAAGGTATTTCGATTCTGCCGTTCCAAGTGTCACAA
GAACTTCACCCGGAAGAGAAACCCGAGGAAGTCAAAATGGACCAAGGCCT
TCCGGCGAGCGGCCGGCAAGGAGATGTCGGTGGTATTTCGATTCTGCCGT
TCCAAGTGTCACAAGAACTTCACCCGGAAGAGAAACCCGAGGAAGTCAAA
ATGGACCAAGGCCTTCCGGCGAGCGGCCGGCAAGGAGATGTCGGTGGACA
CGACGTTCGACTTCGAGAAGCGGCGGAATAGGCCAGTCAAGTACGACAGG
GAGGCTATGGGGAAGACTCTCCTTGCAATGAAGAAGGACACGACGTTCGA
CTTCGAGAAGCGGCGGAATAGGCCAGTCAAGTACGACAGGGAGGCTATGG
GGAAGACTCTCCTTGCAATGAAGAAGGTGAAGGAGGTGCAAGCGAAGCGG
GAGCAACGCTTCTTCGAGAACCGGCACCGGGGTGCGCTGGCGAAGGAGAA
GGCGGCTATCAAGGCCGATATCAAGGACAACATCGAACTGCTCGCTCCGG
CCGCGGCGGTGGACAGGGAGAAGATCCTCACGGCCATCTCGGACAAAGCC
AAACAGGTGAAGGAGGTGCAAGCGAAGCGGGAGCAACGCTTCTTCGAGAA
CCGGCACCGGGGTGCGCTGGCGAAGGAGAAGGCGGCTATCAAGGCCGATA
TCAAGGACAACATCGAACTGCTCGCTCCGGCCGCGGCGGTGGACAGGGAG
AAGATCCTCACGGCCATCTCGGACAAAGCCAAACAGCAGAAAGCCTCCGC
GGCAGCGTCGAAGGCAAGAGAGCTCATGGAGACGAAGGGCTAACAGAAAG
CCTCCGCGGCAGCGTCGAAGGCAAGAGAGCTCATGGAGACGAAGGGCTAA
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