prot_P-lacustris_contig999.16264.1 (polypeptide) Pleurocladia lacustris SAG_25_93

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-lacustris_contig999.16264.1
Unique Nameprot_P-lacustris_contig999.16264.1
Typepolypeptide
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Sequence length267
Homology
BLAST of mRNA_P-lacustris_contig999.16264.1 vs. uniprot
Match: A0A6H5J8E7_9PHAE (RRM domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8E7_9PHAE)

HSP 1 Score: 347 bits (890), Expect = 1.460e-117
Identity = 207/262 (79.01%), Postives = 219/262 (83.59%), Query Frame = 0
Query:   10 SEAGGVVNIRLVLDFETGKPKGFAFVEYEDAATALSAIRNLNGYECNGRPLRVNFSNNSSLGAEQQRGEKAPQQERTVKGVVMQMGAHEVWDIVSNMKQLVETKPDKAKQMFVSHPQVAEALLHMQVRLGMLKADDVPSLRAPPQKDRPSIVLGPEPIMLGTGAILPQLVPASGQFQQPQTNPTLGWGHAVQQPLQLQQVSAFQ-----VPXXXXXXXXXXXXXXXXXSILQPPPSQSGWGAASNPTAENKPRDPRGARYSR 266
            SEAGG+V+IRLV DFETGKPKGFAFVEYEDAATALSAIRNLNGY+CNGR LRVNFSNNSSLGAEQQRGEKAPQQERTVKGVVMQMG +EVWDIVSNMKQLVE +PDKAKQMFVSHPQVAEALLHMQVRLGM KA+DVPSL    ++D       P  IMLGTGAILPQLVP  GQFQQP TNPTLGWG A Q P+Q QQV   +       XXXXXXXXXXXXXXXXX +LQPP SQ GWG A NP AE KPRDPRG RY+R
Sbjct:   30 SEAGGIVSIRLVSDFETGKPKGFAFVEYEDAATALSAIRNLNGYDCNGRLLRVNFSNNSSLGAEQQRGEKAPQQERTVKGVVMQMGIYEVWDIVSNMKQLVEKEPDKAKQMFVSHPQVAEALLHMQVRLGMFKAEDVPSLFVKAEEDVTK--KKPGAIMLGTGAILPQLVPPPGQFQQPPTNPTLGWGQAAQHPIQTQQVMTLRPXXXXXXXXXXXXXXXXXXXXXXXPMLQPPQSQGGWGTAVNPKAEIKPRDPRGGRYNR 289          
BLAST of mRNA_P-lacustris_contig999.16264.1 vs. uniprot
Match: D8LMG1_ECTSI (Phosphatidylinositol-3-phosphatase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMG1_ECTSI)

HSP 1 Score: 318 bits (815), Expect = 6.820e-97
Identity = 169/199 (84.92%), Postives = 178/199 (89.45%), Query Frame = 0
Query:   10 SEAGGVVNIRLVLDFETGKPKGFAFVEYEDAATALSAIRNLNGYECNGRPLRVNFSNNSSLGAEQQRGEKAPQQERTVKGVVMQMGAHEVWDIVSNMKQLVETKPDKAKQMFVSHPQVAEALLHMQVRLGMLKADDVPSLRAPPQKDRPSIVLGPEPIMLGTGAILPQLVPASGQFQQPQTNPTLGWGHAVQQPLQLQQ 208
            SEAGG+V+IRLVLDFETGKPKGFAFVEYEDAATALSAIRNLNGY+CNGR LRVNFSNNSSLGAEQQRGEKAPQQERTVKGVVMQMG +EVWDIVSNMKQLVE +PDKAKQMFVSHPQVAEALLHMQVRLGM KA+DVPSL    ++D       P  IMLGTGAILPQLVPA GQFQQP TNPTLGWG AVQQP+Q QQ
Sbjct:   30 SEAGGIVSIRLVLDFETGKPKGFAFVEYEDAATALSAIRNLNGYDCNGRLLRVNFSNNSSLGAEQQRGEKAPQQERTVKGVVMQMGIYEVWDIVSNMKQLVEKEPDKAKQMFVSHPQVAEALLHMQVRLGMFKAEDVPSLFIKAKEDVSK--KKPGAIMLGTGAILPQLVPAPGQFQQPPTNPTLGWGQAVQQPIQTQQ 226          
BLAST of mRNA_P-lacustris_contig999.16264.1 vs. uniprot
Match: A0A835YTP2_9STRA (RRM domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTP2_9STRA)

HSP 1 Score: 160 bits (406), Expect = 5.800e-46
Identity = 89/149 (59.73%), Postives = 112/149 (75.17%), Query Frame = 0
Query:   10 SEAGGVVNIRLVLDFETGKPKGFAFVEYEDAATALSAIRNLNGYECNGRPLRVNFSNNSSLGAEQ----QRGEKAPQQERTVKGVVMQMGAHEVWDIVSNMKQLVETKPDKAKQMFVSHPQVAEALLHMQVRLGMLKADDVPSLRAPPQ 154
            SEAG VVNIR V+D ETGKPKG+AFVE+ED+ATALSAIRNLNGYECNGR LRVN+S+NS+L  E+      G+     ERTV+ V+  M   EV  +++ +K+  E +PD+AKQM  S PQVAEALL MQ+RLGM+K   +P++ APPQ
Sbjct:   18 SEAGRVVNIRSVVDHETGKPKGYAFVEFEDSATALSAIRNLNGYECNGRQLRVNYSSNSALTGEKGGXXXXGKALEVGERTVRMVIAGMPLEEVRGLLTQLKEFAEKEPDQAKQMLTSQPQVAEALLQMQLRLGMVKPGQIPAV-APPQ 165          
BLAST of mRNA_P-lacustris_contig999.16264.1 vs. uniprot
Match: A0A7S4V4Q8_9STRA (Hypothetical protein n=5 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4V4Q8_9STRA)

HSP 1 Score: 115 bits (288), Expect = 2.960e-26
Identity = 63/153 (41.18%), Postives = 92/153 (60.13%), Query Frame = 0
Query:   10 SEAGGVVNIRLVLDFETGKPKGFAFVEYEDAATALSAIRNLNGYECNGRPLRVNFSNNS-------SLGAEQQRGEKAPQQER-------------TVKGVVMQMGAHEVWDIVSNMKQLVETKPDKAKQMFVSHPQVAEALLHMQVRLGMLK 142
            SE G +V +R+V D ETGKP+GFAF+E+ED   ALSAIRN+N YE NGR +RVNFSN+S        LG +        Q  R              V   +  +   E++D+V+ +K++ +T PD+A+++  SHPQ+ EA+LH+  +L M+K
Sbjct:   66 SELGRLVKVRMVKDLETGKPRGFAFIEFEDPQAALSAIRNMNDYELNGRRIRVNFSNSSHLETLAGELGMDMSHANSQRQASRDAAAAKEDKSGTQAVAESLKTLTKGEMYDVVAKLKEIADTDPDEARRLLCSHPQLPEAILHLMSKLDMIK 218          
BLAST of mRNA_P-lacustris_contig999.16264.1 vs. uniprot
Match: A0A7S4EPR9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4EPR9_9STRA)

HSP 1 Score: 113 bits (282), Expect = 1.270e-25
Identity = 66/155 (42.58%), Postives = 91/155 (58.71%), Query Frame = 0
Query:   10 SEAGGVVNIRLVLDFETGKPKGFAFVEYEDAATALSAIRNLNGYECNGRPLRVNFSNNSSLGA------------EQQRGEKAPQQERT----------VKGVVMQMGAHEVWDIVSNMKQLVETKPDKAKQMFVSHPQVAEALLHMQVRLGMLK 142
            SE G V+ +RLV D ETGKP+GFAFVE+ED   ALSAIRN+N YE NGR LRVNFSN+S L A            + QR   +     T          V   +  M   E++DIV+ MK++ +  PD+A+++   HPQ+ EA+L +  +L M++
Sbjct:   46 SEIGRVIKVRLVTDVETGKPRGFAFVEFEDPQAALSAIRNMNEYELNGRRLRVNFSNSSHLEALASKLGMDLSQHQTQRSSSSSSNNATQQTHGAGTNAVADSLKSMSKGEMYDIVAKMKEIADRDPDEARRLLAGHPQLPEAMLFIMSKLDMVQ 200          
BLAST of mRNA_P-lacustris_contig999.16264.1 vs. uniprot
Match: A0A8J2SWM9_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SWM9_9STRA)

HSP 1 Score: 110 bits (275), Expect = 1.400e-25
Identity = 65/153 (42.48%), Postives = 91/153 (59.48%), Query Frame = 0
Query:    6 RMMCSEAGGVVNIRLVLDFETGKPKGFAFVEYEDAATALSAIRNLNGYECNGRPLRVNFSNNSSLGAEQQRGEKAPQQ---ERTVKGVVMQMGAHEVWDIVSNMKQLVETKPDKAKQMFVSHPQVAEALLHMQVRLGMLKADDVPSLRAPPQK 155
            R + SE G V N+R+ ++ ETGKP+GF FVEY+DAATALSAIRNLNG +  GR LRVNFSNNS+L     RG    ++   + +   +  ++   EVWD+VS  K+L E   +   ++  +   +  A + M   LGM+ +   PS    PQK
Sbjct:   27 RRIFSEVGRVKNVRMAVNSETGKPRGFCFVEYDDAATALSAIRNLNGRDVGGRDLRVNFSNNSALVDYASRGGSGREKTGAQLSATDITARLSDREVWDVVSEAKRLAEGDAETLGRLLNASGALTSAFVDMLGTLGMVPSAKGPSAAFAPQK 179          
BLAST of mRNA_P-lacustris_contig999.16264.1 vs. uniprot
Match: A0A4D9CUE4_9STRA (RRM domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CUE4_9STRA)

HSP 1 Score: 111 bits (278), Expect = 2.250e-25
Identity = 68/160 (42.50%), Postives = 103/160 (64.38%), Query Frame = 0
Query:    6 RMMCSEAGGVVNIRLVLDFETGKPK-GFAFVEYEDAATALSAIRNLNGYECNGRPLRVNFSNNSSLGA-EQQRG----EKAPQQERTVKGVVMQMGAHEVWDIVSNMKQLVETKPDKAKQMFVSHPQVAEALLHMQVRLGMLKADDVPSLRAPPQKDRPS 159
            R + S AG VVN+R++ D   G PK G+AFVEY++  TAL+AI+NL   E +GR LRV FSNNS L A  +QRG           +++ GV+ Q    +++D+++++K + E KPD+ + + +SHPQ+ EA++HMQV++GM++    P  RA  Q   PS
Sbjct:   24 RQVFSTAGNVVNVRVMTD--RGDPKKGYAFVEYDNPDTALTAIQNLGNVEVDGRRLRVGFSNNSGLEAIAKQRGLTILPGGGVTGKSLDGVLAQFSLPDMYDMIAHLKDVAENKPDELRLLLISHPQIGEAIVHMQVKIGMIR----PLARAADQSHFPS 177          
BLAST of mRNA_P-lacustris_contig999.16264.1 vs. uniprot
Match: A0A7S3EJ57_9RHOD (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S3EJ57_9RHOD)

HSP 1 Score: 107 bits (268), Expect = 3.910e-24
Identity = 77/209 (36.84%), Postives = 109/209 (52.15%), Query Frame = 0
Query:   10 SEAGGVVNIRLVLDFETGKPKGFAFVEYEDAATALSAIRNLNGYECNGRPLRVNFSNNSSLGAEQQRGEKAPQ----QERTVKG------------VVMQMGAHEVWDIVSNMKQLVETKPDKAKQMFVSHPQVAEALLHMQVRLGMLKADDVPSLRAPPQKDRPSIVLGPEPIMLGTGAI-----LPQLVPA--SGQFQQPQTNPTLG 195
            S+ G V + RLV D +TGKPKGF F EYEDA TA+SA+RNLNG E NGRPLRV+ S +     ++Q G+  PQ    Q  T  G            +  +M   +V+D++ NMK+L++      + +  + P +  ALL  Q+ LGM+ A  +P+    PQ   P+    P PI    G +     +P + PA  +   QQ Q  P  G
Sbjct:   29 SQVGVVSSFRLVYDQQTGKPKGFGFCEYEDAETAMSALRNLNGVEVNGRPLRVSLSEHDKSRVQEQTGQTVPQGKNSQGNTGGGGRGDGAASRQNVITERMTPQQVFDVMLNMKELIQKDEGTVRTLLNNDPNMTYALLQGQIMLGMVPAHVIPA--GVPQVPIPATGGAPLPIGALPGGVNAARPIPMMPPADQAALLQQAQLAPNQG 235          
BLAST of mRNA_P-lacustris_contig999.16264.1 vs. uniprot
Match: A0A448ZLV1_9STRA (RRM domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZLV1_9STRA)

HSP 1 Score: 108 bits (271), Expect = 4.640e-24
Identity = 65/157 (41.40%), Postives = 90/157 (57.32%), Query Frame = 0
Query:   10 SEAGGVVNIRLVLDFETGKPKGFAFVEYEDAATALSAIRNLNGYECNGRPLRVNFSNNSSLGAEQQR-GEKAPQQE-----------------------RTVKGVVMQMGAHEVWDIVSNMKQLVETKPDKAKQMFVSHPQVAEALLHMQVRLGMLK 142
            SE G V+ +RLV D ETGKP+GFAFVE+ED   ALSAIRN+N YE NGR LRVNFSN+S L A   + G    Q +                         V   +  M   E++DIV+ MK++ +  PD+A+++   HPQ+ EA+L +  +L M++
Sbjct:   44 SEIGRVIKVRLVTDVETGKPRGFAFVEFEDPQAALSAIRNMNDYELNGRRLRVNFSNSSHLEALASKLGMDLSQHQSRQSXXXXXXXXXXXXPHHSAGTNAVADSLKTMSKGEMYDIVAKMKEIADRDPDEARRLLAGHPQLPEAMLFIMSKLDMVQ 200          
BLAST of mRNA_P-lacustris_contig999.16264.1 vs. uniprot
Match: A0A6U3ZUV0_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A6U3ZUV0_9STRA)

HSP 1 Score: 108 bits (269), Expect = 7.590e-24
Identity = 58/161 (36.02%), Postives = 90/161 (55.90%), Query Frame = 0
Query:   10 SEAGGVVNIRLVLDFETGKPKGFAFVEYEDAATALSAIRNLNGYECNGRPLRVNFSNNSSL----------------------------GAEQQRGEKAPQQERTVKGVVMQMGAHEVWDIVSNMKQLVETKPDKAKQMFVSHPQVAEALLHMQVRLGMLK 142
            SE G ++ +R+V D ETGKP+GFAF+E+ED   ALSAIRN+N YE NGR +RVNFSN+S L                            G +  +   A    R V   +  M   E++D+++ +K++ ++ P++A+++   HPQ+ EA+L+    L M+K
Sbjct:   55 SELGRIIKVRMVSDQETGKPRGFAFIEFEDPQAALSAIRNMNEYEINGRKIRVNFSNSSHLETLAGQMGMDLSNVTGPKKDDNTTNQAQGGDGTQSSAAVAGSRAVASALKSMNKGEMYDVIAKLKEISDSNPEEARKILTQHPQLPEAILYCMSELDMIK 215          
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig999.16264.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5J8E7_9PHAE1.460e-11779.01RRM domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LMG1_ECTSI6.820e-9784.92Phosphatidylinositol-3-phosphatase n=1 Tax=Ectocar... [more]
A0A835YTP2_9STRA5.800e-4659.73RRM domain-containing protein (Fragment) n=1 Tax=T... [more]
A0A7S4V4Q8_9STRA2.960e-2641.18Hypothetical protein n=5 Tax=Ditylum brightwellii ... [more]
A0A7S4EPR9_9STRA1.270e-2542.58Hypothetical protein (Fragment) n=1 Tax=Pseudo-nit... [more]
A0A8J2SWM9_9STRA1.400e-2542.48Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A4D9CUE4_9STRA2.250e-2542.50RRM domain-containing protein n=2 Tax=Monodopsidac... [more]
A0A7S3EJ57_9RHOD3.910e-2436.84Hypothetical protein n=1 Tax=Rhodosorus marinus Ta... [more]
A0A448ZLV1_9STRA4.640e-2441.40RRM domain-containing protein n=1 Tax=Pseudo-nitzs... [more]
A0A6U3ZUV0_9STRA7.590e-2436.02Hypothetical protein n=1 Tax=Skeletonema marinoi T... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 1..63
e-value: 6.1E-9
score: 45.7
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 7..61
e-value: 4.2E-14
score: 52.1
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 1..67
score: 14.232
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 4..90
e-value: 9.9E-19
score: 69.6
IPR025742Cleavage stimulation factor subunit 2, hinge domainPFAMPF14327CSTF2_hingecoord: 87..146
e-value: 1.1E-9
score: 38.7
NoneNo IPR availablePANTHERPTHR45735FAMILY NOT NAMEDcoord: 8..239
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 8..75

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig999contigP-lacustris_contig999:21263..41846 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig999.16264.1mRNA_P-lacustris_contig999.16264.1Pleurocladia lacustris SAG_25_93mRNAP-lacustris_contig999 20786..41904 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-lacustris_contig999.16264.1 ID=prot_P-lacustris_contig999.16264.1|Name=mRNA_P-lacustris_contig999.16264.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=267bp
MVGATRMMCSEAGGVVNIRLVLDFETGKPKGFAFVEYEDAATALSAIRNL
NGYECNGRPLRVNFSNNSSLGAEQQRGEKAPQQERTVKGVVMQMGAHEVW
DIVSNMKQLVETKPDKAKQMFVSHPQVAEALLHMQVRLGMLKADDVPSLR
APPQKDRPSIVLGPEPIMLGTGAILPQLVPASGQFQQPQTNPTLGWGHAV
QQPLQLQQVSAFQVPPPPPPQQLQQQQQHQHMSILQPPPSQSGWGAASNP
TAENKPRDPRGARYSR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
IPR012677Nucleotide-bd_a/b_plait_sf
IPR025742CSTF2_hinge
IPR035979RBD_domain_sf