prot_P-lacustris_contig995.16239.1 (polypeptide) Pleurocladia lacustris SAG_25_93

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-lacustris_contig995.16239.1
Unique Nameprot_P-lacustris_contig995.16239.1
Typepolypeptide
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Sequence length354
Homology
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BLAST of mRNA_P-lacustris_contig995.16239.1 vs. uniprot
Match: D7FQJ2_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQJ2_ECTSI)

HSP 1 Score: 290 bits (741), Expect = 4.010e-94
Identity = 157/195 (80.51%), Postives = 169/195 (86.67%), Query Frame = 0 
Query:    1 MGSKLST--RPGNDGEAPPGVVMKKEGELIVVDTLLEEGLNDGDLPHLCLDKTLLMNSGHDAFGPKDLEDVLTTVRWTKRKLNKLSVMFNGGKAAGLAHGGGIGNFIAKDTALREVTVLCERLSDESVQSLAEALETNKTVEKLLLGGKELQEDAAGALGRVLKSASSSLQQLTLFNCGFRDVGAELLAFGLAAN 193
            MG+++S+  RP N GEAPPGVV+KK+GELIVVDTLLEEGLNDGDLPHLCLDKTLLM SGHD  GPKDLEDVLT+VR TKRKLNKLSVMFNG        G GIGNFIAKDT++REVTVLCE LSD+S+QSLAEALETNKTVEKLLLGGKELQE AA AL  VLKS  S+LQQLTLFNCGFRDVGAELLA GLA N
Sbjct:    1 MGNEISSSARPRNVGEAPPGVVIKKKGELIVVDTLLEEGLNDGDLPHLCLDKTLLMGSGHDTLGPKDLEDVLTSVRRTKRKLNKLSVMFNG------TGGQGIGNFIAKDTSVREVTVLCEDLSDDSIQSLAEALETNKTVEKLLLGGKELQEGAAAALESVLKSPFSALQQLTLFNCGFRDVGAELLASGLARN 189
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BLAST of mRNA_P-lacustris_contig995.16239.1 vs. uniprot
Match: A0A835YRN5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRN5_9STRA)

HSP 1 Score: 56.2 bits (134), Expect = 4.640e-5
Identity = 37/113 (32.74%), Postives = 55/113 (48.67%), Query Frame = 0 
Query:   28 IVVDTLLEEGLNDGDLPHLCLDKTLLMNSGHDAFGPKDLEDVLTTVRWTKRK---------------------LNKLSVMFNGGKAAGLAHGGGIGNFIAKDTALREVTVLCE 119
            ++ D L E+G  DGDLPHL LD+TL+   GH A  P  LE +L   +  +                       + KL++ FN  +A GL      G+++A +  L E++VLCE
Sbjct:   36 LIQDCLQEDGAADGDLPHLYLDRTLIARQGHAALTPDALEQLLLYAQRRRTPGHAALXXXXXXXXXXXXXXXPVKKLTLEFNHSEALGL------GDYVAANRDLEELSVLCE 142
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig995.16239.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FQJ2_ECTSI4.010e-9480.51Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
A0A835YRN5_9STRA4.640e-532.74Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableSMARTSM00368LRR_RI_2coord: 277..304
e-value: 0.011
score: 24.9
coord: 165..192
e-value: 1.5
score: 15.8
coord: 249..276
e-value: 1.4
score: 16.1
coord: 136..163
e-value: 12.0
score: 9.6
coord: 108..135
e-value: 240.0
score: 0.4
coord: 193..220
e-value: 0.12
score: 21.5
coord: 221..248
e-value: 0.75
score: 18.0
coord: 305..332
e-value: 140.0
score: 1.9
NoneNo IPR availablePANTHERPTHR24114:SF30LEUCINE-RICH REPEAT-CONTAINING PROTEIN 74Acoord: 207..323
NoneNo IPR availablePANTHERPTHR24114FAMILY NOT NAMEDcoord: 101..249
NoneNo IPR availablePANTHERPTHR24114:SF30LEUCINE-RICH REPEAT-CONTAINING PROTEIN 74Acoord: 101..249
NoneNo IPR availablePANTHERPTHR24114FAMILY NOT NAMEDcoord: 207..323
NoneNo IPR availableSUPERFAMILY52047RNI-likecoord: 64..326
IPR001611Leucine-rich repeatPFAMPF13516LRR_6coord: 305..321
e-value: 0.17
score: 12.0
coord: 277..298
e-value: 0.0029
score: 17.5
coord: 165..187
e-value: 0.34
score: 11.1
coord: 193..215
e-value: 0.0038
score: 17.2
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10coord: 222..342
e-value: 7.1E-26
score: 92.4
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10coord: 54..221
e-value: 1.9E-22
score: 81.3

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig995contigP-lacustris_contig995:39880..48016 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig995.16239.1mRNA_P-lacustris_contig995.16239.1Pleurocladia lacustris SAG_25_93mRNAP-lacustris_contig995 39880..48016 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-lacustris_contig995.16239.1 ID=prot_P-lacustris_contig995.16239.1|Name=mRNA_P-lacustris_contig995.16239.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=354bp
MGSKLSTRPGNDGEAPPGVVMKKEGELIVVDTLLEEGLNDGDLPHLCLDK
TLLMNSGHDAFGPKDLEDVLTTVRWTKRKLNKLSVMFNGGKAAGLAHGGG
IGNFIAKDTALREVTVLCERLSDESVQSLAEALETNKTVEKLLLGGKELQ
EDAAGALGRVLKSASSSLQQLTLFNCGFRDVGAELLAFGLAANKNLQRLD
LAYCGIGENGAVAISRAVRLHPALSHLNLKNNAVGTRGSTALADALRGNF
IVRELMLGTNSIGNGGASALADAFSDSTTLVYLDLGCNGIDESGGMAIVE
GLARNTSLRHLILRRNAIGPETCEKIRIGWNNRNAKNSMQLGNPWHDGLS
LPF*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001611Leu-rich_rpt
IPR032675LRR_dom_sf