mRNA_P-lacustris_contig995.16239.1 (mRNA) Pleurocladia lacustris SAG_25_93
|
Overview
Homology
BLAST of mRNA_P-lacustris_contig995.16239.1 vs. uniprot
Match: D7FQJ2_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQJ2_ECTSI) HSP 1 Score: 290 bits (741), Expect = 4.010e-94 Identity = 157/195 (80.51%), Postives = 169/195 (86.67%), Query Frame = 1
Query: 1 MGSKLST--RPGNDGEAPPGVVMKKEGELIVVDTLLEEGLNDGDLPHLCLDKTLLMNSGHDAFGPKDLEDVLTTVRWTKRKLNKLSVMFNGGKAAGLAHGGGIGNFIAKDTALREVTVLCERLSDESVQSLAEALETNKTVEKLLLGGKELQEDAAGALGRVLKSASSSLQQLTLFNCGFRDVGAELLAFGLAAN 579
MG+++S+ RP N GEAPPGVV+KK+GELIVVDTLLEEGLNDGDLPHLCLDKTLLM SGHD GPKDLEDVLT+VR TKRKLNKLSVMFNG G GIGNFIAKDT++REVTVLCE LSD+S+QSLAEALETNKTVEKLLLGGKELQE AA AL VLKS S+LQQLTLFNCGFRDVGAELLA GLA N
Sbjct: 1 MGNEISSSARPRNVGEAPPGVVIKKKGELIVVDTLLEEGLNDGDLPHLCLDKTLLMGSGHDTLGPKDLEDVLTSVRRTKRKLNKLSVMFNG------TGGQGIGNFIAKDTSVREVTVLCEDLSDDSIQSLAEALETNKTVEKLLLGGKELQEGAAAALESVLKSPFSALQQLTLFNCGFRDVGAELLASGLARN 189 The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig995.16239.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 1
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-lacustris_contig995.16239.1 >prot_P-lacustris_contig995.16239.1 ID=prot_P-lacustris_contig995.16239.1|Name=mRNA_P-lacustris_contig995.16239.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=354bp MGSKLSTRPGNDGEAPPGVVMKKEGELIVVDTLLEEGLNDGDLPHLCLDKback to top mRNA from alignment at P-lacustris_contig995:39880..48016+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-lacustris_contig995.16239.1 ID=mRNA_P-lacustris_contig995.16239.1|Name=mRNA_P-lacustris_contig995.16239.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=8137bp|location=Sequence derived from alignment at P-lacustris_contig995:39880..48016+ (Pleurocladia lacustris SAG_25_93)back to top Coding sequence (CDS) from alignment at P-lacustris_contig995:39880..48016+ >mRNA_P-lacustris_contig995.16239.1 ID=mRNA_P-lacustris_contig995.16239.1|Name=mRNA_P-lacustris_contig995.16239.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=2124bp|location=Sequence derived from alignment at P-lacustris_contig995:39880..48016+ (Pleurocladia lacustris SAG_25_93)back to top |