prot_P-lacustris_contig992.16218.1 (polypeptide) Pleurocladia lacustris SAG_25_93

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-lacustris_contig992.16218.1
Unique Nameprot_P-lacustris_contig992.16218.1
Typepolypeptide
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Sequence length247
Homology
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BLAST of mRNA_P-lacustris_contig992.16218.1 vs. uniprot
Match: A0A6H5L770_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L770_9PHAE)

HSP 1 Score: 265 bits (676), Expect = 1.800e-86
Identity = 149/238 (62.61%), Postives = 164/238 (68.91%), Query Frame = 0 
Query:   12 MDTYN-TSDTHGGVEVGIGIARHVYGPASVHLLPCKIHHTGPAPVATYFRPRPPLVEDEXXXXXXXXXXXXXXXXXXXXXXXTGISLAEATGK-GVEERIGEETNTGSSLGGASSGAGENAKPVAADRRENGEGEGDREAAACDQKWELFEDDSAEHTARFRGRKFVGRKVELPEGVHGVVLREQPCPAEVRENNENVTSYWEAETSFREVMVWGHDQPRRESTLDRCLAWLEVSKSV 247
            MDTY+ +SDTH   EVGIG ARHVYGPASVHLLPCKIHHTGPAPVATYFRP P                             T  +LA+ TG  GV +    +T+T       + G+GENAK VA        GE    +A  DQKWELFEDDSAEHTARFRGRKFVGRKVELP+GVHGVVLRE+PCP  VRENNE+V SYW AETSFREV VWGHDQPRREST+DR LAWLEVSKS+
Sbjct:    1 MDTYSASSDTHSRCEVGIGAARHVYGPASVHLLPCKIHHTGPAPVATYFRPSP---------------AKENRNSDTTAAAPTATALADETGNNGVGDGAARKTST-------APGSGENAKLVAXXXXXXXXGE----SAVGDQKWELFEDDSAEHTARFRGRKFVGRKVELPKGVHGVVLREKPCPPGVRENNEDVASYWAAETSFREVTVWGHDQPRRESTVDRSLAWLEVSKSI 212
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BLAST of mRNA_P-lacustris_contig992.16218.1 vs. uniprot
Match: D8LTC6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTC6_ECTSI)

HSP 1 Score: 190 bits (482), Expect = 3.080e-57
Identity = 95/118 (80.51%), Postives = 102/118 (86.44%), Query Frame = 0 
Query:  130 AKPVAADRRENGEGEGDREAAACDQKWELFEDDSAEHTARFRGRKFVGRKVELPEGVHGVVLREQPCPAEVRENNENVTSYWEAETSFREVMVWGHDQPRRESTLDRCLAWLEVSKSV 247
            AKPVAAD      G GD E+A  DQKWELFEDDSAEHTARFRGRKFVGRKVELP+GVHGVVLRE+PCP  VRENNE+V SYW AETSFREV VWGHDQPR+EST+DR LAWLEVSKS+
Sbjct:   88 AKPVAADG-----GGGDGESAVGDQKWELFEDDSAEHTARFRGRKFVGRKVELPKGVHGVVLREKPCPPGVRENNEDVASYWAAETSFREVTVWGHDQPRQESTVDRSLAWLEVSKSI 200
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig992.16218.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L770_9PHAE1.800e-8662.61Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LTC6_ECTSI3.080e-5780.51Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.30.200.130coord: 36..81
e-value: 1.5E-7
score: 33.1
NoneNo IPR availableGENE3D3.30.200.130coord: 145..247
e-value: 6.8E-15
score: 56.7
NoneNo IPR availablePANTHERPTHR47204FAMILY NOT NAMEDcoord: 39..247
IPR013924Ribonuclease H2, subunit CPFAMPF08615RNase_H2_suCcoord: 40..245
e-value: 3.4E-18
score: 66.2

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig992contigP-lacustris_contig992:49756..52942 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig992.16218.1mRNA_P-lacustris_contig992.16218.1Pleurocladia lacustris SAG_25_93mRNAP-lacustris_contig992 49756..52942 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-lacustris_contig992.16218.1 ID=prot_P-lacustris_contig992.16218.1|Name=mRNA_P-lacustris_contig992.16218.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=247bp
HHQLTTKARVTMDTYNTSDTHGGVEVGIGIARHVYGPASVHLLPCKIHHT
GPAPVATYFRPRPPLVEDEKRNNSNNGDSDTAAAATAAAATTTGISLAEA
TGKGVEERIGEETNTGSSLGGASSGAGENAKPVAADRRENGEGEGDREAA
ACDQKWELFEDDSAEHTARFRGRKFVGRKVELPEGVHGVVLREQPCPAEV
RENNENVTSYWEAETSFREVMVWGHDQPRRESTLDRCLAWLEVSKSV
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013924RNase_H2_suC