mRNA_P-lacustris_contig992.16218.1 (mRNA) Pleurocladia lacustris SAG_25_93

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-lacustris_contig992.16218.1
Unique NamemRNA_P-lacustris_contig992.16218.1
TypemRNA
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Homology
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BLAST of mRNA_P-lacustris_contig992.16218.1 vs. uniprot
Match: A0A6H5L770_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L770_9PHAE)

HSP 1 Score: 265 bits (676), Expect = 1.800e-86
Identity = 149/238 (62.61%), Postives = 164/238 (68.91%), Query Frame = 1 
Query:   34 MDTYN-TSDTHGGVEVGIGIARHVYGPASVHLLPCKIHHTGPAPVATYFRPRPPLVEDEXXXXXXXXXXXXXXXXXXXXXXXTGISLAEATGK-GVEERIGEETNTGSSLGGASSGAGENAKPVAADRRENGEGEGDREAAACDQKWELFEDDSAEHTARFRGRKFVGRKVELPEGVHGVVLREQPCPAEVRENNENVTSYWEAETSFREVMVWGHDQPRRESTLDRCLAWLEVSKSV 741
            MDTY+ +SDTH   EVGIG ARHVYGPASVHLLPCKIHHTGPAPVATYFRP P                             T  +LA+ TG  GV +    +T+T       + G+GENAK VA        GE    +A  DQKWELFEDDSAEHTARFRGRKFVGRKVELP+GVHGVVLRE+PCP  VRENNE+V SYW AETSFREV VWGHDQPRREST+DR LAWLEVSKS+
Sbjct:    1 MDTYSASSDTHSRCEVGIGAARHVYGPASVHLLPCKIHHTGPAPVATYFRPSP---------------AKENRNSDTTAAAPTATALADETGNNGVGDGAARKTST-------APGSGENAKLVAXXXXXXXXGE----SAVGDQKWELFEDDSAEHTARFRGRKFVGRKVELPKGVHGVVLREKPCPPGVRENNEDVASYWAAETSFREVTVWGHDQPRRESTVDRSLAWLEVSKSI 212
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BLAST of mRNA_P-lacustris_contig992.16218.1 vs. uniprot
Match: D8LTC6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTC6_ECTSI)

HSP 1 Score: 190 bits (482), Expect = 3.080e-57
Identity = 95/118 (80.51%), Postives = 102/118 (86.44%), Query Frame = 1 
Query:  388 AKPVAADRRENGEGEGDREAAACDQKWELFEDDSAEHTARFRGRKFVGRKVELPEGVHGVVLREQPCPAEVRENNENVTSYWEAETSFREVMVWGHDQPRRESTLDRCLAWLEVSKSV 741
            AKPVAAD      G GD E+A  DQKWELFEDDSAEHTARFRGRKFVGRKVELP+GVHGVVLRE+PCP  VRENNE+V SYW AETSFREV VWGHDQPR+EST+DR LAWLEVSKS+
Sbjct:   88 AKPVAADG-----GGGDGESAVGDQKWELFEDDSAEHTARFRGRKFVGRKVELPKGVHGVVLREKPCPPGVRENNEDVASYWAAETSFREVTVWGHDQPRQESTVDRSLAWLEVSKSI 200
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig992.16218.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L770_9PHAE1.800e-8662.61Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LTC6_ECTSI3.080e-5780.51Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig992contigP-lacustris_contig992:49756..52942 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionRibonuclease H2, subunit C
Ec32 orthologEc-12_006060.1
Exons4
Model size741
Cds size741
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig992.16218.1prot_P-lacustris_contig992.16218.1Pleurocladia lacustris SAG_25_93polypeptideP-lacustris_contig992 49756..52942 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817424.0884497-CDS-P-lacustris_contig992:49755..499061622817424.0884497-CDS-P-lacustris_contig992:49755..49906Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig992 49756..49906 +
1693495057.755723-CDS-P-lacustris_contig992:49755..499061693495057.755723-CDS-P-lacustris_contig992:49755..49906Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig992 49756..49906 +
1622817424.0998678-CDS-P-lacustris_contig992:51334..517101622817424.0998678-CDS-P-lacustris_contig992:51334..51710Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig992 51335..51710 +
1693495057.7651825-CDS-P-lacustris_contig992:51334..517101693495057.7651825-CDS-P-lacustris_contig992:51334..51710Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig992 51335..51710 +
1622817424.1109893-CDS-P-lacustris_contig992:51917..520531622817424.1109893-CDS-P-lacustris_contig992:51917..52053Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig992 51918..52053 +
1693495057.7809937-CDS-P-lacustris_contig992:51917..520531693495057.7809937-CDS-P-lacustris_contig992:51917..52053Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig992 51918..52053 +
1622817424.1215813-CDS-P-lacustris_contig992:52864..529421622817424.1215813-CDS-P-lacustris_contig992:52864..52942Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig992 52865..52942 +
1693495057.7944407-CDS-P-lacustris_contig992:52864..529421693495057.7944407-CDS-P-lacustris_contig992:52864..52942Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig992 52865..52942 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-lacustris_contig992.16218.1

>prot_P-lacustris_contig992.16218.1 ID=prot_P-lacustris_contig992.16218.1|Name=mRNA_P-lacustris_contig992.16218.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=247bp
HHQLTTKARVTMDTYNTSDTHGGVEVGIGIARHVYGPASVHLLPCKIHHT
GPAPVATYFRPRPPLVEDEKRNNSNNGDSDTAAAATAAAATTTGISLAEA
TGKGVEERIGEETNTGSSLGGASSGAGENAKPVAADRRENGEGEGDREAA
ACDQKWELFEDDSAEHTARFRGRKFVGRKVELPEGVHGVVLREQPCPAEV
RENNENVTSYWEAETSFREVMVWGHDQPRRESTLDRCLAWLEVSKSV
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mRNA from alignment at P-lacustris_contig992:49756..52942+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-lacustris_contig992.16218.1 ID=mRNA_P-lacustris_contig992.16218.1|Name=mRNA_P-lacustris_contig992.16218.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=3187bp|location=Sequence derived from alignment at P-lacustris_contig992:49756..52942+ (Pleurocladia lacustris SAG_25_93)
CACCATCAACTTACCACCAAAGCACGTGTCACGATGGACACGTATAATAC
CTCCGATACGCATGGCGGAGTCGAGGTTGGTATAGGAATCGCTCGGCACG
TCTATGGCCCAGCAAGTGTTCATCTACTGCCTTGCAAGATTCACCACACA
GGTAAGACGAGAGTACGAGCGTTGAGGGAGCGTTGGAGAGAATTGGTCGT
CTCCGGACCGCTGGTGTTCCTGTACCGAGGTTGCTCAGAACGGCGAGGTT
AACTCATGACACACGCTTCCCGCCAGGCTGCAGATGCTGCTCCCGATGGC
AACGCACTATCGGGTGGGAAACTTTACCTTCCTGGATTACGGCAGATACC
ACCCTACCCAGCTTTTCCCTATCGCTGCTGCAGTGAGTTCAGGTGCTCCG
CAACAGGGGTGGTTGTGTCGAACTGTTGACCTCTGACGGGTGGTTGCGTC
GAACCATTGACCTCTAAGACCGTTTTGGTAAAATATCTGGGCGTCTCCAC
TAGCCTCTCCCTCTCGCTTTTAGACCCTCTCGCTTGGAGATTCACACAGT
TAGTATCGACGGAGGTGGCTTCGTGTTTTTCGTCGCACGGACAGGACTCA
CCTAAAGAGACATGCCCCCACCACACTCCCCATATGATTCTGCATCGTTA
GTTTGTTCCAACGCATGTTTCGTTTTTTGTTCCGTCGTAGAACACACAAC
GTGACTTGAGCTTGTCGACTTGCCACGGTGCTCCGAGATCAACGCCACCG
AAAGGATCCCTACACATTAGCTCGCTATTTCCAACGCGGTATATCTCCGC
GGCAGACGGTTTACACTATTTGAACAGGGCGGTAATGGTGGTATATTCCG
AGGGTCTTTCCAAACACGCAGTCTTCAGTCGGCATTGTTTAGGCCTTTGC
TGCCGAAATATCGAGCGTCGATGAGCGGCACAGGTGGTGACATAGTGTGC
TACCTATAGGAGAACCAGCACTTTGACAAAATACTTTCTATAAGCGTGCG
GTTTGTTTTTTGTACCCCCACCAAGTCCTAAAAACCAAACTCTTGGTCAG
CACGAGAGAGCGCTTTTGCATCACATATGCATTATTGACACCTTGAGATA
CCGTTTCGCTGAAACTGGAATGAGATAAGAGTGTTTTGGCAATATGCGAA
TCGAAAAAGTCAGGAAACACTACGAGAGCCTTGGCATCACGCTGCCCGAG
TAGAATTAGTTCAACTGGCGGAGGGTTTCATGACGCGGTAGTCCCGACAG
GCGACGTGCAGTACACCTCCTCTTGTTGGCTTGACGCAAGATTGTCAGAA
GGGCGTTTCCCTTGATGTGTACCTCTCAGCGGGGTAATGCCTCCGTTATG
GTCCCTACTGCCACCAGCGCGAAATACCCGGAAGCGTCGTAAAGACGCGC
TGCCTGCGACAGCTCCGGGAACAACCTTGCTCGCCAATGCCGTCCCCCAC
CAATCCCAGCAACCTTGATTTTTGATTCAGGAAAAAAAATGGCAACTTGA
ATCTGCCGCGAAATTTCTCTGTTTTATTGCTACGAATATGTAATCCCGTA
CCTCTAAAAACAACGTGGTCACACTGCAGGACCCGCGCCGGTGGCAACCT
ATTTCCGGCCGAGACCGCCGTTAGTAGAGGATGAAAAACGCAACAACAGC
AACAATGGCGACAGCGACACCGCCGCCGCCGCCACAGCAGCAGCAGCAAC
AACAACAGGAATATCCCTTGCCGAAGCGACGGGTAAAGGCGTCGAGGAGA
GGATTGGGGAGGAGACCAATACGGGATCAAGCTTGGGTGGGGCGAGTAGC
GGTGCCGGAGAAAACGCTAAGCCTGTTGCGGCCGACCGGAGGGAGAATGG
AGAAGGAGAAGGGGATAGAGAAGCTGCAGCTTGCGATCAGAAGTGGGAGC
TGTTCGAAGACGACAGTGCCGAGCATACAGCCCGGTTCCGCGGCAGAAAG
TTCGTGTGAGTCCGGGATCGGAGAACCCGGCGCTCCCTGACTGCCTCTCT
GTCTTGTCTATCTGTGTGTCTGCCCATCTTTCGTCCATTGTATTCCTGCC
GCCTGTCTGCCGAGCCTCGTATGCTTCGCTTCGATTTTGTCGTATGTACC
ACTGCTGTACTCTGCTCCCCTTTCTCATAGCGCAATACCTGCACGGGTTT
CCCGTAATCCAGGGGCCGAAAGGTGGAGCTGCCAGAGGGAGTCCATGGGG
TGGTGCTTCGCGAACAGCCGTGCCCGGCCGAGGTGCGGGAGAACAACGAA
AACGTGACGTCGTACTGGGAGGCAGAGACATCATTCCGGGAAGTGATGGT
GAGAAACGGTAAAGCCTTCTAACTCCCAGAAACCCCTCTCTGGCCTCCTT
CCAAGTACCGTGGACGTATGGAGTAACGAAGAGGGACCCCACCTTTTATC
GCTTCGGGCAAAAGAGGCTCACCTGTTGCCGCTTCCAACCTTTCGGGATC
TGGCTATGCGCGAGAAAATTCTGCGGTAGCACACTCAACGGCAAAATGTG
AACTCTCTCACTTTTCGCGGAGGAATATAGTAGATAGGTGGTATTGGTAC
TTTGTGACGGTCGTCCTTGACAGTGTTTGCAGAGGCCCACAAAGTGACTG
TTGGTTCACTTGCTTGTGCGGGGGTGGGAGTTTTTGGAGCTGACGTTTCA
GCGACCGGAAAGGTGATTTGAGGAAGAGTCCACAGACTCTTATGAAGAAA
GGACTCTCTGTAGAATAAGGACAATTTTTCGCACGTGTGTGCTAATTTAG
ACCTCACCCTGTGTTGTTTCTACGCCTCCGCTGACGTCGCGATTGGTGAA
ACGCAATCCACGTGGGTGGTGAAATCTCAGCGTGCGACGCATGGATGCGA
CGGTCTCCATTACACCACGGCCAGATGGATGATGGATGCCCATACGCCCC
GCCATAGCTTCAGGGCTGGATAGTGGCTCGTTTGGGTTCTGTGTTACAGT
AGCTGAGATTCGCAGTCGGTGCCTTCAGAACAAGGCAACAAACAGCTTAA
TGATGCGGTCCATGTTTTGAGGACTCGAGCGAACGCCGCTGAGTACTCCC
CTCCCACCCCCGCAACTCCAACTGTGGGCTGGCGCCACTCCGTCTGGTTG
ACATGACAGGTGTGGGGGCATGATCAGCCTCGGCGAGAGAGCACATTGGA
CCGATGCCTGGCGTGGCTAGAAGTTTCAAAATCGGTA
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Coding sequence (CDS) from alignment at P-lacustris_contig992:49756..52942+

>mRNA_P-lacustris_contig992.16218.1 ID=mRNA_P-lacustris_contig992.16218.1|Name=mRNA_P-lacustris_contig992.16218.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=1482bp|location=Sequence derived from alignment at P-lacustris_contig992:49756..52942+ (Pleurocladia lacustris SAG_25_93)
CACCATCAACTTACCACCAAAGCACGTGTCACGATGGACACGTATAATAC
CTCCGATACGCATGGCGGAGTCGAGGTTGGTATAGGAATCGCTCGGCACG
TCTATGGCCCAGCAAGTGTTCATCTACTGCCTTGCAAGATTCACCACACA
GCACCATCAACTTACCACCAAAGCACGTGTCACGATGGACACGTATAATA
CCTCCGATACGCATGGCGGAGTCGAGGTTGGTATAGGAATCGCTCGGCAC
GTCTATGGCCCAGCAAGTGTTCATCTACTGCCTTGCAAGATTCACCACAC
AGGACCCGCGCCGGTGGCAACCTATTTCCGGCCGAGACCGCCGTTAGTAG
AGGATGAAAAACGCAACAACAGCAACAATGGCGACAGCGACACCGCCGCC
GCCGCCACAGCAGCAGCAGCAACAACAACAGGAATATCCCTTGCCGAAGC
GACGGGTAAAGGCGTCGAGGAGAGGATTGGGGAGGAGACCAATACGGGAT
CAAGCTTGGGTGGGGCGAGTAGCGGTGCCGGAGAAAACGCTAAGCCTGTT
GCGGCCGACCGGAGGGAGAATGGAGAAGGAGAAGGGGATAGAGAAGCTGC
AGCTTGCGATCAGAAGTGGGAGCTGTTCGAAGACGACAGTGCCGAGCATA
CAGCCCGGTTCCGCGGCAGAAAGTTCGTGACCCGCGCCGGTGGCAACCTA
TTTCCGGCCGAGACCGCCGTTAGTAGAGGATGAAAAACGCAACAACAGCA
ACAATGGCGACAGCGACACCGCCGCCGCCGCCACAGCAGCAGCAGCAACA
ACAACAGGAATATCCCTTGCCGAAGCGACGGGTAAAGGCGTCGAGGAGAG
GATTGGGGAGGAGACCAATACGGGATCAAGCTTGGGTGGGGCGAGTAGCG
GTGCCGGAGAAAACGCTAAGCCTGTTGCGGCCGACCGGAGGGAGAATGGA
GAAGGAGAAGGGGATAGAGAAGCTGCAGCTTGCGATCAGAAGTGGGAGCT
GTTCGAAGACGACAGTGCCGAGCATACAGCCCGGTTCCGCGGCAGAAAGT
TCGTGGGCCGAAAGGTGGAGCTGCCAGAGGGAGTCCATGGGGTGGTGCTT
CGCGAACAGCCGTGCCCGGCCGAGGTGCGGGAGAACAACGAAAACGTGAC
GTCGTACTGGGAGGCAGAGACATCATTCCGGGAAGTGATGGGGCCGAAAG
GTGGAGCTGCCAGAGGGAGTCCATGGGGTGGTGCTTCGCGAACAGCCGTG
CCCGGCCGAGGTGCGGGAGAACAACGAAAACGTGACGTCGTACTGGGAGG
CAGAGACATCATTCCGGGAAGTGATGGTGTGGGGGCATGATCAGCCTCGG
CGAGAGAGCACATTGGACCGATGCCTGGCGTGGCTAGAAGTTTCAAAATC
GGTAGTGTGGGGGCATGATCAGCCTCGGCGAGAGAGCACATTGGACCGAT
GCCTGGCGTGGCTAGAAGTTTCAAAATCGGTA
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