prot_P-lacustris_contig98.16116.1 (polypeptide) Pleurocladia lacustris SAG_25_93

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-lacustris_contig98.16116.1
Unique Nameprot_P-lacustris_contig98.16116.1
Typepolypeptide
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Sequence length175
Homology
BLAST of mRNA_P-lacustris_contig98.16116.1 vs. uniprot
Match: D8LD41_ECTSI (SDH3, succinate dehydrogenase subunit 3 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LD41_ECTSI)

HSP 1 Score: 252 bits (643), Expect = 3.190e-83
Identity = 138/176 (78.41%), Postives = 153/176 (86.93%), Query Frame = 0
Query:    1 MSSMLARVAQRTA-ALPSALAQKGRPLAAAGGLQVLSRNSSSS-SGQEKESYSARQAKTGRPLSPHVTIYDFPPAALSSIANRVSGVALVVGLYGISAASLVGCDAPGLMSALGSSGAGPAVKFAVSFPLVYHYFGAVRHTVWDYVPDTLQTSGVAKTSYALLGASGAISLGLSAI 174
            M++ LAR  QRT  A P AL  KGRPL AA G   LSR+SSSS S +EKESY+ARQA+TGRP+SPHVTIYDFPPAALSSIANRV+GVALV GLYGIS A+LVGCDA GLMSALGSSG GPAVK AVSFPLVYHY GAVRHTVWDY+P+TLQT+GVAKTSYALLG SGA+SLGL+A+
Sbjct:    1 MATTLARAVQRTTTAAPLALTHKGRPLVAAVGSHALSRSSSSSASDKEKESYTARQARTGRPVSPHVTIYDFPPAALSSIANRVTGVALVAGLYGISGATLVGCDAAGLMSALGSSGVGPAVKLAVSFPLVYHYLGAVRHTVWDYMPETLQTAGVAKTSYALLGVSGAVSLGLAAV 176          
BLAST of mRNA_P-lacustris_contig98.16116.1 vs. uniprot
Match: A0A7S1XVJ2_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XVJ2_9STRA)

HSP 1 Score: 149 bits (377), Expect = 8.960e-43
Identity = 77/126 (61.11%), Postives = 93/126 (73.81%), Query Frame = 0
Query:   47 KESYSARQAKTGRPLSPHVTIYDFPPAALSSIANRVSGVALVVGLYGISAASLVGCDAPGLMSALGSSGAGPAVKFAVSFPLVYHYFGAVRHTVWDYVPDTLQTSGVAKTSYALLGASGAISLGLS 172
            +E YSARQ KTGRP+SPHVTIY FP  A+SSI+ RV+G  L VGL GI A +LVG D P LMSA+GSS  GP  KFAVS+ LVYH+FGA RH VWD  P+ L+   V +TS  ++GA+G IS GL+
Sbjct:   52 EEKYSARQKKTGRPVSPHVTIYAFPAVAISSISVRVTGCILSVGLGGIGALALVGVDTPALMSAVGSSAIGPLAKFAVSYSLVYHFFGAARHYVWDQSPEMLENDQVYQTSLGIMGAAGVISAGLA 177          
BLAST of mRNA_P-lacustris_contig98.16116.1 vs. uniprot
Match: A0A835YMP1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YMP1_9STRA)

HSP 1 Score: 145 bits (366), Expect = 1.950e-41
Identity = 69/120 (57.50%), Postives = 87/120 (72.50%), Query Frame = 0
Query:   50 YSARQAKTGRPLSPHVTIYDFPPAALSSIANRVSGVALVVGLYGISAASLVGCDAPGLMSALGSSGAGPAVKFAVSFPLVYHYFGAVRHTVWDYVPDTLQTSGVAKTSYALLGASGAISL 169
            Y  RQ KTGRP+SPHVT Y FP  A+SSI NRV+GV LV GLYGI A +LVG D  GLM+ LG +   P  K  V+FPL+YHY GA RHT+WD+ P+T+  + VA++SY L GA+G ++L
Sbjct:   30 YIERQNKTGRPVSPHVTAYRFPVVAISSITNRVTGVGLVGGLYGIGALALVGVDVQGLMAMLGETAVAPLAKMVVTFPLIYHYLGAARHTIWDFKPETVNNASVAQSSYILFGAAGGLTL 149          
BLAST of mRNA_P-lacustris_contig98.16116.1 vs. uniprot
Match: A0A836CCH7_9STRA (Transmembrane subunit of succinate dehydrogenase/Fumarate reductase (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CCH7_9STRA)

HSP 1 Score: 135 bits (339), Expect = 1.510e-37
Identity = 67/124 (54.03%), Postives = 86/124 (69.35%), Query Frame = 0
Query:   46 EKESYSARQAKTGRPLSPHVTIYDFPPAALSSIANRVSGVALVVGLYGISAASLVGCDAPGLMSALGSSGAGPAVKFAVSFPLVYHYFGAVRHTVWDYVPDTLQTSGVAKTSYALLGASGAISL 169
            E  SY   Q + GRP+SPHVT Y FP AA+SSI NR++GVALV GLYGI A SLVG DA  +MS +  S     VK  V+FPL+YHYF A RHT+WD+ P+T++   V K+S  +  A+G++SL
Sbjct:   11 ESHSYDELQQRRGRPISPHVTNYRFPIAAISSITNRITGVALVGGLYGIGALSLVGVDAQHIMSVIHDSILAGPVKLVVTFPLIYHYFAAARHTIWDFYPETVENKSVEKSSLLIFAAAGSLSL 134          
BLAST of mRNA_P-lacustris_contig98.16116.1 vs. uniprot
Match: A0A7S1YU13_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1YU13_9STRA)

HSP 1 Score: 129 bits (325), Expect = 1.870e-35
Identity = 71/129 (55.04%), Postives = 88/129 (68.22%), Query Frame = 0
Query:   46 EKESYSARQAKTGRPLSPHVTIYDFPPAALSSIANRVSGVALVVGLYGISAASLVGCD--APGLMSALGSSGA--GPAVKFAVSFPLVYHYFGAVRHTVWDYVPDTLQTSGVAKTSYALLGASGAISLG 170
            +K++YS R A+TGRP+SPH+TIY FP  ALSSI NRV+GVAL  G  G+ A  L+G    A GL+  +GSSGA  G   KFAV+FP VYHY GA+RH  WD  P+ L+ + V K S AL G+S  IS G
Sbjct:    5 KKQNYSERMARTGRPVSPHLTIYSFPVGALSSITNRVTGVALTFGAAGVGAIELLGGSGAAAGLLQDIGSSGALVGCTAKFAVAFPCVYHYIGAIRHLAWDNRPELLENTDVEKASIALFGSSLLISAG 133          
BLAST of mRNA_P-lacustris_contig98.16116.1 vs. uniprot
Match: W7TK90_9STRA (Succinate dehydrogenase cytochrome b subunit n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TK90_9STRA)

HSP 1 Score: 128 bits (322), Expect = 2.030e-34
Identity = 68/123 (55.28%), Postives = 85/123 (69.11%), Query Frame = 0
Query:   47 KESYSARQAKTGRPLSPHVTIYDFPPAALSSIANRVSGVALVVGLYGISAASLVGCDAPGLMSALGSSGAGPAVKFAVSFPLVYHYFGAVRHTVWDYVPDTLQTSGVAKTSYALLGASGAISL 169
            KE+Y+ RQA+TGRP+SPHVTIY FP  AL+SI+ RV+G  L VGL GIS  +L G D P LMS+LG+S  G   K    FPL++HY   +RH  WD  P+ L   GVA+ SY LLG++ AISL
Sbjct:   45 KETYTERQARTGRPVSPHVTIYKFPITALTSISTRVTGGVLTVGLTGISLLALGGADVPMLMSSLGNSMVGVPAKVLFGFPLIFHYGSGLRHFFWDNNPNFLNNKGVAEASYILLGSTVAISL 167          
BLAST of mRNA_P-lacustris_contig98.16116.1 vs. uniprot
Match: A0A7S2HYL2_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2HYL2_9STRA)

HSP 1 Score: 127 bits (319), Expect = 6.430e-34
Identity = 66/129 (51.16%), Postives = 87/129 (67.44%), Query Frame = 0
Query:   46 EKESYSARQAKTGRPLSPHVTIYDFPPAALSSIANRVSGVALVVGLYGISAASLVGCD--APGLMSALGSSGA--GPAVKFAVSFPLVYHYFGAVRHTVWDYVPDTLQTSGVAKTSYALLGASGAISLG 170
            +K++Y  R AKTGRP+SPH+TIY FP  A+SSI NRV+G AL  G  G+ A  LVG    A GLM  + +SG     + KFAV+FP ++HYFGA+RH  WDY+P+ L    V K S+AL G+S  +S+G
Sbjct:   55 KKQNYKERMAKTGRPVSPHLTIYHFPVGAMSSITNRVTGCALTFGAAGVGAIELVGGSGAAMGLMQDIAASGGLVAASAKFAVAFPCIFHYFGAIRHIAWDYMPEYLNNPDVEKASWALFGSSLVVSVG 183          
BLAST of mRNA_P-lacustris_contig98.16116.1 vs. uniprot
Match: A0A448Z9H1_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448Z9H1_9STRA)

HSP 1 Score: 125 bits (314), Expect = 2.460e-33
Identity = 77/141 (54.61%), Postives = 95/141 (67.38%), Query Frame = 0
Query:   40 SSSSGQE--KESYSARQAKTGRPLSPHVTIYDFPPAALSSIANRVSGVALVVGLYGISAASLVGCDAPG----LMSALGSSG---AGPAVKFAVSFPLVYHYFGAVRHTVWDYVPDT-LQTSGVAKTSYALLGASGAISLG 170
            S SSG+E  K++Y+ R  KTGRP+SPHVTIY  P  A +SI  RV+G+ L  G +G+ A  L+G   PG    LM ++GSSG   A PA KFAV+FPLVYHY GAV H VWDY PD  L    V K+S AL+G++G ISLG
Sbjct:   32 SKSSGEEYKKQNYTERMQKTGRPVSPHVTIYALPVPAFASITTRVTGIMLSFGAFGVGAIDLMG--GPGASLSLMESIGSSGFLVASPA-KFAVAFPLVYHYLGAVXHFVWDYFPDKYLNNEDVQKSSIALIGSAGLISLG 169          
BLAST of mRNA_P-lacustris_contig98.16116.1 vs. uniprot
Match: A0A7S3MID7_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3MID7_9STRA)

HSP 1 Score: 124 bits (312), Expect = 3.020e-33
Identity = 72/143 (50.35%), Postives = 92/143 (64.34%), Query Frame = 0
Query:   31 GLQVLSRNSSSSSGQEKESYSARQAKTGRPLSPHVTIYDFPPAALSSIANRVSGVALVVGLYGISAASLVGCDAPGLMSALGS-SGAGPAVKFAVSFPLVYHYFGAVRHTVWDYVPDTLQTSGVAKTSYALLGASGAISLGLS 172
            G++V SR S  SS     SYS  QAK GRP+SPHV IY FPPAAL+SI NRV+G  L VG+ GI   +L G D   +MS +G  S  G   K +V+FPLVYHY   +RH  WD  P+ L T  V ++S+ L+G+S AIS+ L+
Sbjct:   13 GVKVASR-SFVSSNVNNGSYSEEQAKKGRPISPHVEIYKFPPAALTSITNRVTGGLLSVGMTGIGVLALAGADVSSIMSNIGDISVVGQTAKLSVAFPLVYHYLAGIRHIAWDRNPELLHTDKVTQSSHVLIGSSVAISVVLA 154          
BLAST of mRNA_P-lacustris_contig98.16116.1 vs. uniprot
Match: K0SKA1_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SKA1_THAOC)

HSP 1 Score: 126 bits (317), Expect = 3.060e-33
Identity = 70/122 (57.38%), Postives = 80/122 (65.57%), Query Frame = 0
Query:   47 KESYSARQAKTGRPLSPHVTIYDFPPAALSSIANRVSGVALVVGLYGISAASLVGCDAPG--LMSALGSSGAGPAV--KFAVSFPLVYHYFGAVRHTVWDYVPDTLQTSGVAKTSYALLGAS 164
            KE+YSAR A TGRP+SPHVTIY FP  ALSSI NRV+GV L  G  G+ A  LVG    G  LMSA+G SG   A   KFAV+FP VYHY G  RH +WD  P+ L    V K +YAL+G S
Sbjct:   88 KENYSARMAATGRPISPHVTIYSFPVGALSSITNRVTGVMLSFGAAGLGAVELVGGSGAGVDLMSAIGGSGGVMAAGAKFAVAFPFVYHYMGGARHLIWDTKPEMLTNVDVEKATYALVGGS 209          
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig98.16116.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LD41_ECTSI3.190e-8378.41SDH3, succinate dehydrogenase subunit 3 n=2 Tax=Ec... [more]
A0A7S1XVJ2_9STRA8.960e-4361.11Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A835YMP1_9STRA1.950e-4157.50Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CCH7_9STRA1.510e-3754.03Transmembrane subunit of succinate dehydrogenase/F... [more]
A0A7S1YU13_9STRA1.870e-3555.04Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
W7TK90_9STRA2.030e-3455.28Succinate dehydrogenase cytochrome b subunit n=2 T... [more]
A0A7S2HYL2_9STRA6.430e-3451.16Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]
A0A448Z9H1_9STRA2.460e-3354.61Uncharacterized protein n=1 Tax=Pseudo-nitzschia m... [more]
A0A7S3MID7_9STRA3.020e-3350.35Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
K0SKA1_THAOC3.060e-3357.38Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000701Succinate dehydrogenase/fumarate reductase type B, transmembrane subunitPFAMPF01127Sdh_cytcoord: 58..167
e-value: 2.0E-14
score: 53.6
IPR034804Fumarate reductase/succinate dehydrogenase, transmembrane subunitGENE3D1.20.1300.10coord: 40..174
e-value: 2.4E-29
score: 104.2
IPR034804Fumarate reductase/succinate dehydrogenase, transmembrane subunitSUPERFAMILY81343Fumarate reductase respiratory complex transmembrane subunitscoord: 56..170
IPR014314Succinate dehydrogenase, cytochrome b556 subunitTIGRFAMTIGR02970TIGR02970coord: 59..169
e-value: 2.7E-15
score: 54.6
IPR014314Succinate dehydrogenase, cytochrome b556 subunitPIRSFPIRSF000178SDH_cyt_b560coord: 9..174
e-value: 4.6E-25
score: 86.3
NoneNo IPR availablePANTHERPTHR10978:SF5SUCCINATE DEHYDROGENASE CYTOCHROME B560 SUBUNIT, MITOCHONDRIALcoord: 20..172
NoneNo IPR availablePANTHERPTHR10978SUCCINATE DEHYDROGENASE CYTOCHROME B560 SUBUNITcoord: 20..172
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 12..20
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 30..174
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..29
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..11
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 21..29

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig98contigP-lacustris_contig98:166223..170252 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig98.16116.1mRNA_P-lacustris_contig98.16116.1Pleurocladia lacustris SAG_25_93mRNAP-lacustris_contig98 165729..170435 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-lacustris_contig98.16116.1 ID=prot_P-lacustris_contig98.16116.1|Name=mRNA_P-lacustris_contig98.16116.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=175bp
MSSMLARVAQRTAALPSALAQKGRPLAAAGGLQVLSRNSSSSSGQEKESY
SARQAKTGRPLSPHVTIYDFPPAALSSIANRVSGVALVVGLYGISAASLV
GCDAPGLMSALGSSGAGPAVKFAVSFPLVYHYFGAVRHTVWDYVPDTLQT
SGVAKTSYALLGASGAISLGLSAI*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000701SuccDH_FuR_B_TM-su
IPR034804SQR/QFR_C/D
IPR014314Succ_DH_cytb556