mRNA_P-lacustris_contig98.16116.1 (mRNA) Pleurocladia lacustris SAG_25_93

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-lacustris_contig98.16116.1
Unique NamemRNA_P-lacustris_contig98.16116.1
TypemRNA
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Homology
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BLAST of mRNA_P-lacustris_contig98.16116.1 vs. uniprot
Match: D8LD41_ECTSI (SDH3, succinate dehydrogenase subunit 3 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LD41_ECTSI)

HSP 1 Score: 253 bits (647), Expect = 2.260e-80
Identity = 138/176 (78.41%), Postives = 153/176 (86.93%), Query Frame = 1 
Query:  184 MSSMLARVAQRTA-ALPSALAQKGRPLAAAGGLQVLSRNSSSS-SGQEKESYSARQAKTGRPLSPHVTIYDFPPAALSSIANRVSGVALVVGLYGISAASLVGCDAPGLMSALGSSGAGPAVKFAVSFPLVYHYFGAVRHTVWDYVPDTLQTSGVAKTSYALLGASGAISLGLSAI 705
            M++ LAR  QRT  A P AL  KGRPL AA G   LSR+SSSS S +EKESY+ARQA+TGRP+SPHVTIYDFPPAALSSIANRV+GVALV GLYGIS A+LVGCDA GLMSALGSSG GPAVK AVSFPLVYHY GAVRHTVWDY+P+TLQT+GVAKTSYALLG SGA+SLGL+A+
Sbjct:    1 MATTLARAVQRTTTAAPLALTHKGRPLVAAVGSHALSRSSSSSASDKEKESYTARQARTGRPVSPHVTIYDFPPAALSSIANRVTGVALVAGLYGISGATLVGCDAAGLMSALGSSGVGPAVKLAVSFPLVYHYLGAVRHTVWDYMPETLQTAGVAKTSYALLGVSGAVSLGLAAV 176
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BLAST of mRNA_P-lacustris_contig98.16116.1 vs. uniprot
Match: A0A7S1XVJ2_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XVJ2_9STRA)

HSP 1 Score: 151 bits (382), Expect = 1.080e-40
Identity = 95/173 (54.91%), Postives = 117/173 (67.63%), Query Frame = 1 
Query:  181 RMSSMLARVAQ-RTAALPSALAQKGRPLAAAGGLQVLSRNSSSSSGQEKESYSARQAKTGRPLSPHVTIYDFPPAALSSIANRVSGVALVVGLYGISAASLVGCDAPGLMSALGSSGAGPAVKFAVSFPLVYHYFGAVRHTVWDYVPDTLQTSGVAKTSYALLGASGAISLGL 696
            R+S  LAR+   R  AL SAL   GR + A   L  L R+ +++  +EK  YSARQ KTGRP+SPHVTIY FP  A+SSI+ RV+G  L VGL GI A +LVG D P LMSA+GSS  GP  KFAVS+ LVYH+FGA RH VWD  P+ L+   V +TS  ++GA+G IS GL
Sbjct:    9 RLSPALARIQPTRQLALRSALL--GRRVTAPSALVPL-RDLATAPSEEK--YSARQKKTGRPVSPHVTIYAFPAVAISSISVRVTGCILSVGLGGIGALALVGVDTPALMSAVGSSAIGPLAKFAVSYSLVYHFFGAARHYVWDQSPEMLENDQVYQTSLGIMGAAGVISAGL 176
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BLAST of mRNA_P-lacustris_contig98.16116.1 vs. uniprot
Match: A0A835YMP1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YMP1_9STRA)

HSP 1 Score: 145 bits (367), Expect = 8.190e-39
Identity = 69/120 (57.50%), Postives = 87/120 (72.50%), Query Frame = 1 
Query:  331 YSARQAKTGRPLSPHVTIYDFPPAALSSIANRVSGVALVVGLYGISAASLVGCDAPGLMSALGSSGAGPAVKFAVSFPLVYHYFGAVRHTVWDYVPDTLQTSGVAKTSYALLGASGAISL 690
            Y  RQ KTGRP+SPHVT Y FP  A+SSI NRV+GV LV GLYGI A +LVG D  GLM+ LG +   P  K  V+FPL+YHY GA RHT+WD+ P+T+  + VA++SY L GA+G ++L
Sbjct:   30 YIERQNKTGRPVSPHVTAYRFPVVAISSITNRVTGVGLVGGLYGIGALALVGVDVQGLMAMLGETAVAPLAKMVVTFPLIYHYLGAARHTIWDFKPETVNNASVAQSSYILFGAAGGLTL 149
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BLAST of mRNA_P-lacustris_contig98.16116.1 vs. uniprot
Match: A0A836CCH7_9STRA (Transmembrane subunit of succinate dehydrogenase/Fumarate reductase (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CCH7_9STRA)

HSP 1 Score: 135 bits (341), Expect = 3.430e-35
Identity = 67/129 (51.94%), Postives = 88/129 (68.22%), Query Frame = 1 
Query:  319 EKESYSARQAKTGRPLSPHVTIYDFPPAALSSIANRVSGVALVVGLYGISAASLVGCDAPGLMSALGSSGAGPAVKFAVSFPLVYHYFGAVRHTVWDYVPDTLQTSGVAKTSYALLGASGAISLGLSAI 705
            E  SY   Q + GRP+SPHVT Y FP AA+SSI NR++GVALV GLYGI A SLVG DA  +MS +  S     VK  V+FPL+YHYF A RHT+WD+ P+T++   V K+S  +  A+G++SL  + +
Sbjct:   11 ESHSYDELQQRRGRPISPHVTNYRFPIAAISSITNRITGVALVGGLYGIGALSLVGVDAQHIMSVIHDSILAGPVKLVVTFPLIYHYFAAARHTIWDFYPETVENKSVEKSSLLIFAAAGSLSLAAACL 139
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BLAST of mRNA_P-lacustris_contig98.16116.1 vs. uniprot
Match: A0A7S1YU13_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1YU13_9STRA)

HSP 1 Score: 130 bits (327), Expect = 3.610e-33
Identity = 72/133 (54.14%), Postives = 89/133 (66.92%), Query Frame = 1 
Query:  319 EKESYSARQAKTGRPLSPHVTIYDFPPAALSSIANRVSGVALVVGLYGISAASLVGCD--APGLMSALGSSGA--GPAVKFAVSFPLVYHYFGAVRHTVWDYVPDTLQTSGVAKTSYALLGASGAISLGLSAI 705
            +K++YS R A+TGRP+SPH+TIY FP  ALSSI NRV+GVAL  G  G+ A  L+G    A GL+  +GSSGA  G   KFAV+FP VYHY GA+RH  WD  P+ L+ + V K S AL G+S  IS G   I
Sbjct:    5 KKQNYSERMARTGRPVSPHLTIYSFPVGALSSITNRVTGVALTFGAAGVGAIELLGGSGAAAGLLQDIGSSGALVGCTAKFAVAFPCVYHYIGAIRHLAWDNRPELLENTDVEKASIALFGSSLLISAGFMFI 137
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BLAST of mRNA_P-lacustris_contig98.16116.1 vs. uniprot
Match: A0A7S2HYL2_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2HYL2_9STRA)

HSP 1 Score: 130 bits (326), Expect = 2.170e-32
Identity = 78/182 (42.86%), Postives = 111/182 (60.99%), Query Frame = 1 
Query:  172 STPRMSSMLARVAQRTAALPSALAQKGRPLAAAGGLQVLSRNSSSSSGQEKESYSARQAKTGRPLSPHVTIYDFPPAALSSIANRVSGVALVVGLYGISAASLVGCD--APGLMSALGSSGA--GPAVKFAVSFPLVYHYFGAVRHTVWDYVPDTLQTSGVAKTSYALLGASGAISLGLSAI 705
            ++P  S++L  + QR  AL +A        ++   + +LS+ S+     +K++Y  R AKTGRP+SPH+TIY FP  A+SSI NRV+G AL  G  G+ A  LVG    A GLM  + +SG     + KFAV+FP ++HYFGA+RH  WDY+P+ L    V K S+AL G+S  +S+G   I
Sbjct:   13 ASPSTSALLRPLVQRQIALHNAA-----KCSSVRSMTILSKESAEE--YKKQNYKERMAKTGRPVSPHLTIYHFPVGAMSSITNRVTGCALTFGAAGVGAIELVGGSGAAMGLMQDIAASGGLVAASAKFAVAFPCIFHYFGAIRHIAWDYMPEYLNNPDVEKASWALFGSSLVVSVGFMFI 187
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BLAST of mRNA_P-lacustris_contig98.16116.1 vs. uniprot
Match: W7TK90_9STRA (Succinate dehydrogenase cytochrome b subunit n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TK90_9STRA)

HSP 1 Score: 129 bits (323), Expect = 5.300e-32
Identity = 68/123 (55.28%), Postives = 85/123 (69.11%), Query Frame = 1 
Query:  322 KESYSARQAKTGRPLSPHVTIYDFPPAALSSIANRVSGVALVVGLYGISAASLVGCDAPGLMSALGSSGAGPAVKFAVSFPLVYHYFGAVRHTVWDYVPDTLQTSGVAKTSYALLGASGAISL 690
            KE+Y+ RQA+TGRP+SPHVTIY FP  AL+SI+ RV+G  L VGL GIS  +L G D P LMS+LG+S  G   K    FPL++HY   +RH  WD  P+ L   GVA+ SY LLG++ AISL
Sbjct:   45 KETYTERQARTGRPVSPHVTIYKFPITALTSISTRVTGGVLTVGLTGISLLALGGADVPMLMSSLGNSMVGVPAKVLFGFPLIFHYGSGLRHFFWDNNPNFLNNKGVAEASYILLGSTVAISL 167
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BLAST of mRNA_P-lacustris_contig98.16116.1 vs. uniprot
Match: A0A6U0SSH4_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A6U0SSH4_9STRA)

HSP 1 Score: 126 bits (316), Expect = 4.510e-31
Identity = 79/179 (44.13%), Postives = 107/179 (59.78%), Query Frame = 1 
Query:  172 STPRMSSMLARVAQRTAALPSALAQKGRPLAAAGGLQVLSRNSSSSSGQEKESYSARQAKTGRPLSPHVTIYDFPPAALSSIANRVSGVALVVGLYGISAASLVGCDAPGLMSALGSSGAGPAV----KFAVSFPLVYHYFGAVRHTVWDYVPDTLQTSGVAKTSYALLGASGAISLGL 696
            S+ R SSML +       L ++L++    L +  G+ +++++S      EKE+YS R  +T RP+SPHVTIY FP  AL+SI NRV+G+AL +G  G+    LVG     L      +  GP V    KFAV+FP  YHYFG +RH +WD  PD L TS V+  SYAL+G+S   SLGL
Sbjct:    3 SSIRSSSMLRQT------LKTSLSRSKVQLESCRGMTIMNKDSRKE--YEKENYSERMNQTERPVSPHVTIYAFPITALTSITNRVTGLALSIGAAGLGTVELVGGSGASLALMQDIAALGPIVGGIAKFAVAFPCTYHYFGGLRHLLWDKNPDMLTTSDVSNASYALVGSSTLFSLGL 173
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BLAST of mRNA_P-lacustris_contig98.16116.1 vs. uniprot
Match: A0A7S3MID7_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3MID7_9STRA)

HSP 1 Score: 125 bits (314), Expect = 4.960e-31
Identity = 72/145 (49.66%), Postives = 93/145 (64.14%), Query Frame = 1 
Query:  274 GLQVLSRNSSSSSGQEKESYSARQAKTGRPLSPHVTIYDFPPAALSSIANRVSGVALVVGLYGISAASLVGCDAPGLMSALGS-SGAGPAVKFAVSFPLVYHYFGAVRHTVWDYVPDTLQTSGVAKTSYALLGASGAISLGLSAI 705
            G++V SR S  SS     SYS  QAK GRP+SPHV IY FPPAAL+SI NRV+G  L VG+ GI   +L G D   +MS +G  S  G   K +V+FPLVYHY   +RH  WD  P+ L T  V ++S+ L+G+S AIS+ L+ +
Sbjct:   13 GVKVASR-SFVSSNVNNGSYSEEQAKKGRPISPHVEIYKFPPAALTSITNRVTGGLLSVGMTGIGVLALAGADVSSIMSNIGDISVVGQTAKLSVAFPLVYHYLAGIRHIAWDRNPELLHTDKVTQSSHVLIGSSVAISVVLALL 156
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BLAST of mRNA_P-lacustris_contig98.16116.1 vs. uniprot
Match: A0A448Z9H1_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448Z9H1_9STRA)

HSP 1 Score: 125 bits (315), Expect = 5.790e-31
Identity = 77/141 (54.61%), Postives = 95/141 (67.38%), Query Frame = 1 
Query:  301 SSSSGQE--KESYSARQAKTGRPLSPHVTIYDFPPAALSSIANRVSGVALVVGLYGISAASLVGCDAPG----LMSALGSSG---AGPAVKFAVSFPLVYHYFGAVRHTVWDYVPDT-LQTSGVAKTSYALLGASGAISLG 693
            S SSG+E  K++Y+ R  KTGRP+SPHVTIY  P  A +SI  RV+G+ L  G +G+ A  L+G   PG    LM ++GSSG   A PA KFAV+FPLVYHY GAV H VWDY PD  L    V K+S AL+G++G ISLG
Sbjct:   32 SKSSGEEYKKQNYTERMQKTGRPVSPHVTIYALPVPAFASITTRVTGIMLSFGAFGVGAIDLMG--GPGASLSLMESIGSSGFLVASPA-KFAVAFPLVYHYLGAVXHFVWDYFPDKYLNNEDVQKSSIALIGSAGLISLG 169
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig98.16116.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LD41_ECTSI2.260e-8078.41SDH3, succinate dehydrogenase subunit 3 n=2 Tax=Ec... [more]
A0A7S1XVJ2_9STRA1.080e-4054.91Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A835YMP1_9STRA8.190e-3957.50Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CCH7_9STRA3.430e-3551.94Transmembrane subunit of succinate dehydrogenase/F... [more]
A0A7S1YU13_9STRA3.610e-3354.14Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A7S2HYL2_9STRA2.170e-3242.86Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]
W7TK90_9STRA5.300e-3255.28Succinate dehydrogenase cytochrome b subunit n=2 T... [more]
A0A6U0SSH4_9STRA4.510e-3144.13Hypothetical protein n=1 Tax=Eucampia antarctica T... [more]
A0A7S3MID7_9STRA4.960e-3149.66Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A448Z9H1_9STRA5.790e-3154.61Uncharacterized protein n=1 Tax=Pseudo-nitzschia m... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig98contigP-lacustris_contig98:165729..170435 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score256.5
Seed ortholog evalue8.8e-66
Seed eggNOG ortholog2880.D8LD41
Preferred nameSDHC
KEGG rclassRC00045
KEGG koko:K00236
KEGG ReactionR02164
KEGG Pathwayko00020,ko00190,ko01100,ko01110,ko01120,ko01130,ko01200,ko04714,ko04932,ko05010,ko05012,ko05016,map00020,map00190,map01100,map01110,map01120,map01130,map01200,map04714,map04932,map05010,map05012,map05016
KEGG ModuleM00009,M00011,M00148
Hectar predicted targeting categorymitochondrion
GOsGO:0000104,GO:0002376,GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005746,GO:0005749,GO:0006082,GO:0006091,GO:0006099,GO:0006101,GO:0006105,GO:0006119,GO:0006121,GO:0006139,GO:0006163,GO:0006605,GO:0006626,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006839,GO:0006886,GO:0006950,GO:0006952,GO:0006955,GO:0006979,GO:0006996,GO:0007005,GO:0007006,GO:0007007,GO:0007275,GO:0007568,GO:0008104,GO:0008150,GO:0008152,GO:0008177,GO:0008340,GO:0009060,GO:0009117,GO:0009123,GO:0009126,GO:0009141,GO:0009144,GO:0009150,GO:0009161,GO:0009167,GO:0009199,GO:0009205,GO:0009259,GO:0009605,GO:0009607,GO:0009617,GO:0009987,GO:0010259,GO:0015031,GO:0015833,GO:0015980,GO:0016020,GO:0016021,GO:0016043,GO:0016310,GO:0016491,GO:0016627,GO:0016635,GO:0016999,GO:0017038,GO:0017144,GO:0019637,GO:0019693,GO:0019752,GO:0019866,GO:0020037,GO:0022900,GO:0022904,GO:0031090,GO:0031224,GO:0031966,GO:0031967,GO:0031975,GO:0032501,GO:0032502,GO:0032991,GO:0033036,GO:0033365,GO:0034613,GO:0034641,GO:0042721,GO:0042742,GO:0042773,GO:0042775,GO:0042886,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0043648,GO:0044237,GO:0044238,GO:0044281,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0044743,GO:0045039,GO:0045087,GO:0045184,GO:0045257,GO:0045273,GO:0045281,GO:0045283,GO:0045333,GO:0046034,GO:0046483,GO:0046906,GO:0046907,GO:0048037,GO:0048518,GO:0048519,GO:0048583,GO:0048584,GO:0048585,GO:0048856,GO:0050789,GO:0050829,GO:0050896,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0051704,GO:0051707,GO:0055085,GO:0055086,GO:0055114,GO:0061024,GO:0065002,GO:0065007,GO:0070469,GO:0070585,GO:0070727,GO:0071702,GO:0071704,GO:0071705,GO:0071806,GO:0071840,GO:0072350,GO:0072521,GO:0072594,GO:0072655,GO:0072657,GO:0080134,GO:0090150,GO:0090151,GO:0097159,GO:0098542,GO:0098796,GO:0098798,GO:0098800,GO:0098803,GO:1901135,GO:1901360,GO:1901363,GO:1901564,GO:1902494,GO:1902882,GO:1902883,GO:1902884,GO:1990204,GO:1990542
EggNOG free text desc.succinate dehydrogenase activity
EggNOG OGsCOG2009@1,KOG0449@2759
Ec32 ortholog descriptionSDH3, succinate dehydrogenase subunit 3
Ec32 orthologEc-11_000360.1
COG Functional cat.C
BiGG ReactioniMM904.YMR118C,iND750.YMR118C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002
Exons4
Model size1202
Cds size525
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig98.16116.1prot_P-lacustris_contig98.16116.1Pleurocladia lacustris SAG_25_93polypeptideP-lacustris_contig98 166223..170252 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817411.608213-UTR-P-lacustris_contig98:165728..1662221622817411.608213-UTR-P-lacustris_contig98:165728..166222Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig98 165729..166222 -
1693495047.7124462-UTR-P-lacustris_contig98:165728..1662221693495047.7124462-UTR-P-lacustris_contig98:165728..166222Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig98 165729..166222 -
1622817411.6733823-UTR-P-lacustris_contig98:170252..1704351622817411.6733823-UTR-P-lacustris_contig98:170252..170435Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig98 170253..170435 -
1693495047.7756636-UTR-P-lacustris_contig98:170252..1704351693495047.7756636-UTR-P-lacustris_contig98:170252..170435Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig98 170253..170435 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817411.6205668-CDS-P-lacustris_contig98:166222..1663301622817411.6205668-CDS-P-lacustris_contig98:166222..166330Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig98 166223..166330 -
1693495047.7301018-CDS-P-lacustris_contig98:166222..1663301693495047.7301018-CDS-P-lacustris_contig98:166222..166330Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig98 166223..166330 -
1622817411.6349478-CDS-P-lacustris_contig98:166976..1671251622817411.6349478-CDS-P-lacustris_contig98:166976..167125Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig98 166977..167125 -
1693495047.748038-CDS-P-lacustris_contig98:166976..1671251693495047.748038-CDS-P-lacustris_contig98:166976..167125Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig98 166977..167125 -
1622817411.6462934-CDS-P-lacustris_contig98:168983..1691851622817411.6462934-CDS-P-lacustris_contig98:168983..169185Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig98 168984..169185 -
1693495047.7582603-CDS-P-lacustris_contig98:168983..1691851693495047.7582603-CDS-P-lacustris_contig98:168983..169185Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig98 168984..169185 -
1622817411.6604054-CDS-P-lacustris_contig98:170186..1702521622817411.6604054-CDS-P-lacustris_contig98:170186..170252Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig98 170187..170252 -
1693495047.7670481-CDS-P-lacustris_contig98:170186..1702521693495047.7670481-CDS-P-lacustris_contig98:170186..170252Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig98 170187..170252 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-lacustris_contig98.16116.1

>prot_P-lacustris_contig98.16116.1 ID=prot_P-lacustris_contig98.16116.1|Name=mRNA_P-lacustris_contig98.16116.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=175bp
MSSMLARVAQRTAALPSALAQKGRPLAAAGGLQVLSRNSSSSSGQEKESY
SARQAKTGRPLSPHVTIYDFPPAALSSIANRVSGVALVVGLYGISAASLV
GCDAPGLMSALGSSGAGPAVKFAVSFPLVYHYFGAVRHTVWDYVPDTLQT
SGVAKTSYALLGASGAISLGLSAI*
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mRNA from alignment at P-lacustris_contig98:165729..170435-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-lacustris_contig98.16116.1 ID=mRNA_P-lacustris_contig98.16116.1|Name=mRNA_P-lacustris_contig98.16116.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=4707bp|location=Sequence derived from alignment at P-lacustris_contig98:165729..170435- (Pleurocladia lacustris SAG_25_93)
GCACGGATGCGTGTTTGTGCTCCTCTTGTACTCGGGAGCGTGATTTCGAC
GACAGCATTGATCGCAGATACCCTCGAGCAGTGAGTTGTTCGAAACAAAC
CCTACTGAGCAGTTGCTCAAGGTACATAGCCCACGACCGATTGAACATTG
CGGGGACAAGGACGAGGACGAAGCACGCCGCGAATGTCGAGTATGTTAGC
ACGGGTCGCCCAACGAACTGCGGCTCTTCCATCGGCTCTGGCGCAGAAGG
TGAGGTTGAAGAGGGGATGGAAACATTTCTTGTCTCTGACGGAGCTTGGA
GGAGACTGAATTAAGTTACCAACAATGCCGGACATAATCAGCAGTTGCAG
TGGAAGTTCGGTAAAAGGTCGTTCGCCCCTAGATCACCGCCATCTTCGTC
GGGTCGGCCAATCCGACATGGCGCCCGAATTGTGCTTCAGCTATACATCT
TGCATTGCTAGGCAGATGTATGCACACCGTGGAGATCTGGAAATACCGCG
CCATCTACCCAGTTGCAAAATGCTGCTGTAACAAGGAAGTTGCTGTTGCT
GTAGCGACGTGTTCAACGCTCGACGTAAAACCTGTTTTGAACACGGTATC
TTCTCGTCAACATCAGCGCGCCATGATTGTTGTTATCGTTATCATCCACC
GGTTGTTGTTGGTCCACCTAAACGTACGCCGAAGTGTTGACGGTTTTGCT
ATCGAGCCCGTCCCCTACAACTAGTCTAGTATACCTCTGCGACGTCGCCC
TGCTCATCTGGATTCTTGATGCGACCTTTGGTTCGCTCTGTTGTAGGGTA
AGGTAGGGCAGGGCACTGCTTTTCCCTTGATGAATTGTAGCGCGCACGAT
GCTTTAGTGCTTAGTGTTGAGCTATATTGTTTATTAACGCAGGCTACCAA
AAAACGCATCGGTTGTCTCCATGAATGGGTCGCCCGTCGCTGTCTCCGGG
TACACTGGTATTCGTTCATTTGTGTTTGCACGCACTATGTCTCCTAGCCT
TTTCCATCGTACTCTGGGCGCTTTAACATCATGAAAGTCAATAACGGATT
AGCAAGCTGGCGGAGATGCCAATACGGCCGTGCCCCTCTATTTACCGTGC
GATACTTGTACCGCCCCCCGCGCATTTCAATATTGACGTTACGCTACGCT
TCGTTACCTTTCCCTTCCTTGTCAAGCGTGACCACTGTCTGACTCTTTCT
TTCTTTGAGCTTGGCACTCACTCTAACCTTGCTCAACTTGCTCAACACAG
GGCCGACCCTTAGCAGCAGCAGGCGGCTTGCAGGTCTTGAGCAGAAACTC
CTCTTCCTCTTCCGGTCAGGAGAAAGAGTCGTACTCGGCACGGCAGGCTA
AGACGGGCAGGCCGCTGTCTCCCCACGTTACAATCTATGACTTTCCCCCC
GCGGCGCTGTCGTCCATCGCGAACCGCGTTTCCGGAGTCGCCCTAGTAGT
CGGTAAGTGATGGAGGCGGCAGCAGCAGCAGCGGCAGTAGCGTCATGGAA
GGAGAGTACACAAAACCTAAAAGTTGTGATGGCCGTTACGAAAAGCAAAT
TTTCAAGGTGTACGGCGGCATCGAAACGATATGATACGTTATCAGAAAGC
TCTTTACCGGATTTTGGATTCTGGAAGATTTTCACACAGCGAAATATGGC
CATACTTTAGACACGATGACCGCTTAGCAGGAGCCTGCGCTACCATGCAT
GTAGATGCTGATTCCACAATGGTAACAGAATGCATGGGAATGCACGAGAA
TTCGAAAAGAGAAACGGCAGCGGTACTGAACTAGCGCCAAAGTGGGAGTA
TCAAACATTTTTTTTTTTTCGTTTCGGTGCAGTGTCCAAACAAAGCAAGT
ATCATGCGGCGTGCGCATTCCATTCCCAACAGTGTACAATGATGTGTGCA
ATCGTGTCGGCGGAGTCAGGCTAGTTGCGGATGAGGCAAGGTGCGAGGTC
ATGGCGGGTGTGCAGTGATGCATGTAAACAATTATCAGTTTCAGGAGTGA
AACAATGACCCCCTGGCCCAATTGTACCGGCTGCATTTGTATTGCGGCCA
GCTTGCCGCTGTGCGCTCCAAACCCTAACCCTTATCCTCACCCTCGCGGA
GAGTTCACGTCCCACGTCCCAGGCAGGGAAGAGGATAACGAGTATTCCTG
CTTGTGTCGTGTTGTTGTCGTTTTGTTGGCAGTATCTTGCAACGAGATCA
ATCTACGCCTACGCCGTCTCTTGATCTTCTTGCTGCAGAGCACCATATGG
CCACATACCTTTCACGTAGCTCCCGGAGAGACATTGATAATTTTGGAGAG
ACATTGATACTTCTGCGTAACAAAAGGTTGTGTGCTGCGATGCAGACGCA
GCAAATGCCTAGGGCAGGAAGCGAAACGTCCCTTACCTCCGTACAGTGTG
CGCTTCATGCACCGAGTATCGCAAGCTGCTAGAGGAGTACTTGGAAAGCG
AGAAAGTTGGCATGTAACACCTCACCGTGCGTAAAGGTAGTTGGTGGTGC
GATATGGAAAACAGAACACCGTAAAATGACCAAACAAACCACAACAAAGT
ATAATGACCAAACGAACCACAACAAAGTATAATGACCAAACGAACCACAA
CAAAGTAAAATGACCAAACGAACCACAACAAAGTATAATGACCAAACGAA
CCACAACAAAAGTAAAATGACCAAACGAACCACAACAAAGGCTCTCTCTC
TCCACCACACGACACCACGGCGATCGACCCCAGCCTATGAACCCTTTCCA
CACTAGGATTGTATTTTATAGCCCACCTTAACGTGTCGTGCTTAACCGAA
CCACAGCAGCAGGCGCTGTCACGTGTTCGACGGAGCGACACACCTGTTGA
TGTGTGACTTCCTTCCCGTCTCTTGGGTGATGTGTTTCAAGTGATCGATC
GATTTCATCCCACTTCGAACTCTTGACTTATATGGTCTGATTTTGTTTAC
TCGGTATTTGCCTCAGCTGCTGGGAAGTTTTTTCACTTTCCCCCTCCTGT
GGACAACCGTGGTAGCTGTGTTCTAGAATCATGGTGGCCAAAATATGCCA
GAAAAAATGGACCCCCAGGCAAGATTAGTCGAAATTTCGTGTAAAGTCAA
TGCGGAATCCCAACCATTCGCTCCCATTGTTGACGGCGTTTCTCGAAGGA
GTAGGAACGGTGCTTCTCCGTCCCCTGGGGTATCCAAGAAATGCATGGTC
AGCGGTCAGATGACGATGATCAGATAGATGACCAAGGTCGGCAAGAATGA
ACCCCCCGCCGCCGCCCCGCCCACCTCCATCGGTATTTGTCATTTGCCCG
TTTCTTGCAGGCCTATATGGTATTTCCGCAGCATCTCTCGTGGGTTGCGA
TGCCCCTGGCCTCATGAGCGCGCTGGGCTCTTCAGGAGCAGGACCGGCGG
TGAAGTTTGCGGTGTCTTTTCCTCTCGTGTACCACTACTTCGGGGCTGTA
AGACACACGGTGAGCCAGCCTGTCGAGCATGACGCGACATCTACTTCTCG
ACATGATGGGTTTGTTATTGGTGGTGGTGCCGCTGCTGTTGCTGTTTTCT
CGGAGGTAAAATATTTCTGACTCTACCCCTAAAATCCTGGTCGGATTTTT
TTGGGGAGTTCGCACATCACGTTTTTGTTGGGTAAACCCACAGCCCCATT
CCGTGCCAATTGACAAGACCCTGGCAGATACGCCTGTCCATGTCTCGGGA
AAACGAATGCGCGAGTCATGTCCAACCAGCGACACCGACATCGCATCCGC
GGTGCTGTTGTTCCAGTCGGAACAGTAATGAGTCCAACTGCAGACAGTCA
CACCTGTAGCGGCTCCTTTACATCGTTACGATCCTCACCTGATATGGGAA
TCTACGTCGTCATTTTGAGTGTCGTTCAGGGAGTTTCTCATAGCGTAACC
AGAGGTGCATGGGCGCGCACCTATACTACAATTGTATCAATTATCCATGG
CTTAGCAGATTGATTTAGAAATCGAAATCTTAAACCTCTCGTGCAGTGCA
GAGGATCGTGGCTTGCCAGAGTGCGCGTCCACGGAGGGAGTCTTTTGCGT
GAGAATCGTCTGCCCTGTTTCTGTTCGTGCGCTTTCACGCGACGCCACGC
ACTAGGTGTGGGACTATGTGCCGGACACTCTTCAGACTTCTGGCGTGGCC
AAGACTAGCTACGCGCTGCTTGGCGCTTCCGGCGCTATCAGCCTCGGCCT
GTCTGCGATTTAGCTTAGCGAGGACGACATCAACAACAACAACAAACGCA
ACAAAAACAATGAAACCGGCGCTAAAGTGATATTTGTTGTATTGTTCCCC
ACTTGTAAAGAGTGTCCCGTCTCTGGGGATTTTTACCGTTGAAGCATCCA
TTACAGGGATGTGATATATTGTAGGGGCAAGAAAGGGGTTCGAGCCCTCG
AAGCGAGCGTGCAGTCTCCGTGCGTGCGTGTTCTGTGTTGGTAACTGAAA
TGGTGTTGGGCATCCCGCCACCTATGCATAATTTTTGGCAGCGTTATCCA
GGAAGTTTCCCTCATGATACTCGCGCTAATTCGTAGTTCTGGTGCACTCC
GAACACGACTGTTAAGCGGAAACAGGAGCACGGAGATGCCTTTACAAGCT
GGTTCAACCAAGAAACGAACAACATACGTTCGTCAAGTCATTAACTTGAA
AAAAAAAAAGGAATTGAACCGCGTTCAGCATGTCCCGTGAATCGCCCAAT
CCCAGCG
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Coding sequence (CDS) from alignment at P-lacustris_contig98:165729..170435-

>mRNA_P-lacustris_contig98.16116.1 ID=mRNA_P-lacustris_contig98.16116.1|Name=mRNA_P-lacustris_contig98.16116.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=1050bp|location=Sequence derived from alignment at P-lacustris_contig98:165729..170435- (Pleurocladia lacustris SAG_25_93)
ATGTCGAGTATGTTAGCACGGGTCGCCCAACGAACTGCGGCTCTTCCATC
GGCTCTGGCGCAGAAGATGTCGAGTATGTTAGCACGGGTCGCCCAACGAA
CTGCGGCTCTTCCATCGGCTCTGGCGCAGAAGGGCCGACCCTTAGCAGCA
GCAGGCGGCTTGCAGGTCTTGAGCAGAAACTCCTCTTCCTCTTCCGGTCA
GGAGAAAGAGTCGTACTCGGCACGGCAGGCTAAGACGGGCAGGCCGCTGT
CTCCCCACGTTACAATCTATGACTTTCCCCCCGCGGCGCTGTCGTCCATC
GCGAACCGCGTTTCCGGAGTCGCCCTAGTAGTCGGGCCGACCCTTAGCAG
CAGCAGGCGGCTTGCAGGTCTTGAGCAGAAACTCCTCTTCCTCTTCCGGT
CAGGAGAAAGAGTCGTACTCGGCACGGCAGGCTAAGACGGGCAGGCCGCT
GTCTCCCCACGTTACAATCTATGACTTTCCCCCCGCGGCGCTGTCGTCCA
TCGCGAACCGCGTTTCCGGAGTCGCCCTAGTAGTCGGCCTATATGGTATT
TCCGCAGCATCTCTCGTGGGTTGCGATGCCCCTGGCCTCATGAGCGCGCT
GGGCTCTTCAGGAGCAGGACCGGCGGTGAAGTTTGCGGTGTCTTTTCCTC
TCGTGTACCACTACTTCGGGGCTGTAAGACACACGGCCTATATGGTATTT
CCGCAGCATCTCTCGTGGGTTGCGATGCCCCTGGCCTCATGAGCGCGCTG
GGCTCTTCAGGAGCAGGACCGGCGGTGAAGTTTGCGGTGTCTTTTCCTCT
CGTGTACCACTACTTCGGGGCTGTAAGACACACGGTGTGGGACTATGTGC
CGGACACTCTTCAGACTTCTGGCGTGGCCAAGACTAGCTACGCGCTGCTT
GGCGCTTCCGGCGCTATCAGCCTCGGCCTGTCTGCGATTTAGGTGTGGGA
CTATGTGCCGGACACTCTTCAGACTTCTGGCGTGGCCAAGACTAGCTACG
CGCTGCTTGGCGCTTCCGGCGCTATCAGCCTCGGCCTGTCTGCGATTTAG
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