prot_P-lacustris_contig979.16100.1 (polypeptide) Pleurocladia lacustris SAG_25_93

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-lacustris_contig979.16100.1
Unique Nameprot_P-lacustris_contig979.16100.1
Typepolypeptide
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Sequence length171
Homology
BLAST of mRNA_P-lacustris_contig979.16100.1 vs. uniprot
Match: A0A6H5KLH5_9PHAE (PseudoU_synth_2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLH5_9PHAE)

HSP 1 Score: 229 bits (583), Expect = 9.570e-72
Identity = 125/181 (69.06%), Postives = 137/181 (75.69%), Query Frame = 0
Query:    3 AAIRGPAGCKLLLRARPWRQSRVASSCVRPPQPTTPSLREKDVLYMDNHVLLINKPAGLLSQSDRTGDLDVTALAREYVRVAASKTGDAFVALVHRLDRPVSGVMCVARTSKAAARLSESFRKRNGVTKVYHAVVAGNLTGSGTREDFLVSPDEAG----------------PSRGAVGGR 167
            A  RG A CK+L++AR  RQ+  ASS  RP QP  PS R +DVLYMDNHVLL+NKPAGLLSQSDRTGD DV ALAREYVRVAA+KTG+AFVALVHRLDRPVSGVMCVARTSKAAARLS SFR R+GV K+YHAVVAG L G G R+DFLVSPD +G                P RG  GGR
Sbjct:    4 AGTRGMAACKVLMQARVQRQACAASSRARPLQPRRPSFRVEDVLYMDNHVLLVNKPAGLLSQSDRTGDADVAALAREYVRVAANKTGEAFVALVHRLDRPVSGVMCVARTSKAAARLSASFRARDGVEKIYHAVVAGGLAGRGIRQDFLVSPDASGAVARRGRGPRTGLSSAPVRGGAGGR 184          
BLAST of mRNA_P-lacustris_contig979.16100.1 vs. uniprot
Match: A0A6L8CBW6_9BACT (RluA family pseudouridine synthase n=2 Tax=Rhodothermaceae bacterium TaxID=2026787 RepID=A0A6L8CBW6_9BACT)

HSP 1 Score: 126 bits (317), Expect = 2.670e-33
Identity = 64/106 (60.38%), Postives = 82/106 (77.36%), Query Frame = 0
Query:   46 LYMDNHVLLINKPAGLLSQSDRTGDLDVTALAREYVRVAASKTGDAFVALVHRLDRPVSGVMCVARTSKAAARLSESFRKRNGVTKVYHAVVAGNLTGSGTREDFL 151
            L+ DNH+L ++KPAGLLSQ+D TGD DV  LA+EY++   SK G+ ++ LVHRLDRP SG M +ARTSKAA RLS++FR+R+ V K Y A+V G LTGSG  ED+L
Sbjct:    3 LFEDNHLLTLDKPAGLLSQADSTGDPDVVTLAKEYIKHKYSKPGNVYIGLVHRLDRPTSGAMVLARTSKAARRLSQAFRERS-VKKKYIALVEGALTGSGVMEDYL 107          
BLAST of mRNA_P-lacustris_contig979.16100.1 vs. uniprot
Match: A0A848XZP8_9BACT (RNA pseudouridine synthase n=1 Tax=Rhodothermaceae bacterium TaxID=2026787 RepID=A0A848XZP8_9BACT)

HSP 1 Score: 125 bits (313), Expect = 1.240e-32
Identity = 61/112 (54.46%), Postives = 85/112 (75.89%), Query Frame = 0
Query:   44 DVLYMDNHVLLINKPAGLLSQSDRTGDLDVTALAREYVRVAASKTGDAFVALVHRLDRPVSGVMCVARTSKAAARLSESFRKRNGVTKVYHAVVAGNLTGSGTREDFLVSPD 155
            +VLY+DNH+L++ KP GLL+Q+DRTGD D+    + +++    K G+ F+ LVHRLDRPVSGVM +ARTSKAA RLS++FR+R  V K Y A+V G ++G+G RED+L+  D
Sbjct:    2 EVLYLDNHLLVVVKPPGLLAQADRTGDTDLLTQGKAFLKEKFDKPGNVFLGLVHRLDRPVSGVMVLARTSKAAGRLSKAFRERR-VEKRYLALVEGRMSGAGEREDYLLKED 112          
BLAST of mRNA_P-lacustris_contig979.16100.1 vs. uniprot
Match: A0A6N9AGQ8_9BACT (RluA family pseudouridine synthase n=3 Tax=Rhodothermaceae bacterium TaxID=2026787 RepID=A0A6N9AGQ8_9BACT)

HSP 1 Score: 124 bits (310), Expect = 3.150e-32
Identity = 64/106 (60.38%), Postives = 79/106 (74.53%), Query Frame = 0
Query:   46 LYMDNHVLLINKPAGLLSQSDRTGDLDVTALAREYVRVAASKTGDAFVALVHRLDRPVSGVMCVARTSKAAARLSESFRKRNGVTKVYHAVVAGNLTGSGTREDFL 151
            L+ DNH+L +NKPAGLLSQ+D TGD D+  LAR Y++   SK G+ ++ LVHRLDRPVSG M +ARTSKAA RLS++FR R  VTK Y  VV G + GSG  ED+L
Sbjct:    3 LFEDNHLLTLNKPAGLLSQADITGDPDLVTLARAYLKKKYSKPGNVYIGLVHRLDRPVSGAMVLARTSKAARRLSQAFRDRR-VTKEYIVVVEGLIEGSGVMEDYL 107          
BLAST of mRNA_P-lacustris_contig979.16100.1 vs. uniprot
Match: A0A800M4B4_9BACT (RluA family pseudouridine synthase n=1 Tax=Bacteroidetes bacterium TaxID=1898104 RepID=A0A800M4B4_9BACT)

HSP 1 Score: 124 bits (311), Expect = 3.440e-32
Identity = 65/119 (54.62%), Postives = 84/119 (70.59%), Query Frame = 0
Query:   44 DVLYMDNHVLLINKPAGLLSQSDRTGDLDVTALAREYVRVAASKTGDAFVALVHRLDRPVSGVMCVARTSKAAARLSESFRKRNGVTKVYHAVVAGNLTGSGTREDFLVSPDEAGPSRG 162
            DVLY+DNH+L++ KPAG+LSQ+D TGDLDV   A++++R    K G+ F  LVHRLDRPV G M +ARTSKAA+RL+E FR+R    K Y A+V G L GSG   D+L+   +  P RG
Sbjct:    4 DVLYLDNHLLVVAKPAGMLSQADDTGDLDVVTWAKDFLRREFDKPGNVFAGLVHRLDRPVGGAMVIARTSKAASRLAEQFRQRTP-EKRYLAMVEGRLDGSGRETDWLLKTRD--PKRG 119          
BLAST of mRNA_P-lacustris_contig979.16100.1 vs. uniprot
Match: A0A7Y2C732_9BACT (PseudoU_synth_2 domain-containing protein (Fragment) n=1 Tax=Rhodothermales bacterium TaxID=2306054 RepID=A0A7Y2C732_9BACT)

HSP 1 Score: 119 bits (298), Expect = 1.470e-31
Identity = 62/110 (56.36%), Postives = 79/110 (71.82%), Query Frame = 0
Query:   40 LREKDVLYMDNHVLLINKPAGLLSQSDRTGDLDVTALAREYVRVAASKTGDAFVALVHRLDRPVSGVMCVARTSKAAARLSESFRKRNGVTKVYHAVVAGNLTGSGTRED 149
            + E  V+Y DNH+L++NKPAG+L+Q DR+GDLD+ + AR Y+     K G AF+ LVHRLDRP SGV+ +ARTSKAAARLS  FR+R  VTK Y A+V G+   SG   D
Sbjct:    9 MSEDRVIYCDNHLLVLNKPAGMLTQGDRSGDLDLLSWARGYIERRFDKPGRAFIGLVHRLDRPASGVVILARTSKAAARLSRQFRERE-VTKRYLALVEGHPAASGALRD 117          
BLAST of mRNA_P-lacustris_contig979.16100.1 vs. uniprot
Match: A0A3M1NPK6_9BACT (RNA pseudouridine synthase n=1 Tax=Bacteroidetes bacterium TaxID=1898104 RepID=A0A3M1NPK6_9BACT)

HSP 1 Score: 122 bits (305), Expect = 2.170e-31
Identity = 62/109 (56.88%), Postives = 79/109 (72.48%), Query Frame = 0
Query:   44 DVLYMDNHVLLINKPAGLLSQSDRTGDLDVTALAREYVRVAASKTGDAFVALVHRLDRPVSGVMCVARTSKAAARLSESFRKRNGVTKVYHAVVAGNLTGSGTREDFLV 152
            DVLY+DNH+L++NKP G+L+Q+D TGD DV  L + Y++    K G+ F+ LVHRLDRP SGVM +ARTSKAAARLSE FR R+   K Y A+V G   G+GT  D L+
Sbjct:    4 DVLYLDNHLLVVNKPPGMLAQADTTGDTDVVTLGKAYLKERFQKPGNVFLGLVHRLDRPASGVMVLARTSKAAARLSEQFR-RHSPEKRYLALVEGAWDGNGTAVDHLL 111          
BLAST of mRNA_P-lacustris_contig979.16100.1 vs. uniprot
Match: A0A259TYX9_9BACT (PseudoU_synth_2 domain-containing protein n=1 Tax=Rubricoccus marinus TaxID=716817 RepID=A0A259TYX9_9BACT)

HSP 1 Score: 121 bits (304), Expect = 3.930e-31
Identity = 62/108 (57.41%), Postives = 82/108 (75.93%), Query Frame = 0
Query:   44 DVLYMDNHVLLINKPAGLLSQSDRTGDLDVTALAREYVRVAASKTGDAFVALVHRLDRPVSGVMCVARTSKAAARLSESFRKRNGVTKVYHAVVAGNLTGSGTREDFL 151
            ++L++DNH+L++ KPAG+LSQ D TGD DV   A+ +++   +K G+ FV LV RLDRP SGVM +ARTSKAA+RL+E FRKR+ V KVY A+V G L GSG  ED+L
Sbjct:    4 EILFLDNHLLVVAKPAGMLSQGDSTGDRDVANWAKAFLKREFNKPGNVFVGLVQRLDRPASGVMVLARTSKAASRLTEQFRKRS-VEKVYLALVEGKLEGSGRLEDWL 110          
BLAST of mRNA_P-lacustris_contig979.16100.1 vs. uniprot
Match: UPI001420CA78 (RNA pseudouridine synthase n=1 Tax=Rhodocaloribacter litoris TaxID=2558931 RepID=UPI001420CA78)

HSP 1 Score: 120 bits (302), Expect = 6.410e-31
Identity = 63/109 (57.80%), Postives = 79/109 (72.48%), Query Frame = 0
Query:   44 DVLYMDNHVLLINKPAGLLSQSDRTGDLDVTALAREYVRVAASKTGDAFVALVHRLDRPVSGVMCVARTSKAAARLSESFRKRNGVTKVYHAVVAGNLTGSGTREDFLV 152
            DVLY+DNH+L++NKP GLL+Q+D TGD DV  L + +++    K G  F+ LVHRLDRP SGVM +ARTSKAAARLS+ FR+R    K Y A+V G  TG+GT  D LV
Sbjct:    4 DVLYLDNHLLVVNKPPGLLAQADHTGDPDVLTLGKAWLKARFGKPGRVFLGLVHRLDRPASGVMVLARTSKAAARLSDQFRRRLP-EKRYLALVEGVWTGAGTAVDHLV 111          
BLAST of mRNA_P-lacustris_contig979.16100.1 vs. uniprot
Match: A0A5S9IDS9_RHOMR (RNA pseudouridine synthase n=4 Tax=Rhodothermus marinus TaxID=29549 RepID=A0A5S9IDS9_RHOMR)

HSP 1 Score: 120 bits (302), Expect = 8.400e-31
Identity = 63/111 (56.76%), Postives = 81/111 (72.97%), Query Frame = 0
Query:   42 EKDVLYMDNHVLLINKPAGLLSQSDRTGDLDVTALAREYVRVAASKTGDAFVALVHRLDRPVSGVMCVARTSKAAARLSESFRKRNGVTKVYHAVVAGNLTGSGTREDFLV 152
            E  VLY+DNH+L+INKP+GL SQ DR+G   V +L +  ++   +K G+ ++ LVHRLD PVSGVM +ARTSKAAARL + FR+R  V KVY A+V G L GSGT EDF+ 
Sbjct:    6 ELPVLYLDNHLLVINKPSGLRSQGDRSGAPTVLSLGKALIKERFNKPGNVYLGLVHRLDAPVSGVMVLARTSKAAARLMQQFRERT-VEKVYLALVEGELEGSGTWEDFMA 115          
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig979.16100.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KLH5_9PHAE9.570e-7269.06PseudoU_synth_2 domain-containing protein n=1 Tax=... [more]
A0A6L8CBW6_9BACT2.670e-3360.38RluA family pseudouridine synthase n=2 Tax=Rhodoth... [more]
A0A848XZP8_9BACT1.240e-3254.46RNA pseudouridine synthase n=1 Tax=Rhodothermaceae... [more]
A0A6N9AGQ8_9BACT3.150e-3260.38RluA family pseudouridine synthase n=3 Tax=Rhodoth... [more]
A0A800M4B4_9BACT3.440e-3254.62RluA family pseudouridine synthase n=1 Tax=Bactero... [more]
A0A7Y2C732_9BACT1.470e-3156.36PseudoU_synth_2 domain-containing protein (Fragmen... [more]
A0A3M1NPK6_9BACT2.170e-3156.88RNA pseudouridine synthase n=1 Tax=Bacteroidetes b... [more]
A0A259TYX9_9BACT3.930e-3157.41PseudoU_synth_2 domain-containing protein n=1 Tax=... [more]
UPI001420CA786.410e-3157.80RNA pseudouridine synthase n=1 Tax=Rhodocaloribact... [more]
A0A5S9IDS9_RHOMR8.400e-3156.76RNA pseudouridine synthase n=4 Tax=Rhodothermus ma... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.30.2350.10coord: 35..170
e-value: 4.3E-24
score: 87.2
NoneNo IPR availablePANTHERPTHR21600:SF56TRNA PSEUDOURIDINE SYNTHASE Ccoord: 41..145
NoneNo IPR availablePANTHERPTHR21600RIBOSOMAL LARGE SUBUNIT PSEUDOURIDINE SYNTHASE Bcoord: 41..145
IPR006145Pseudouridine synthase, RsuA/RluAPFAMPF00849PseudoU_synth_2coord: 51..139
e-value: 2.5E-19
score: 69.9
IPR020103Pseudouridine synthase, catalytic domain superfamilySUPERFAMILY55120Pseudouridine synthasecoord: 38..147

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig979contigP-lacustris_contig979:18565..20566 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig979.16100.1mRNA_P-lacustris_contig979.16100.1Pleurocladia lacustris SAG_25_93mRNAP-lacustris_contig979 18449..21737 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-lacustris_contig979.16100.1 ID=prot_P-lacustris_contig979.16100.1|Name=mRNA_P-lacustris_contig979.16100.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=171bp
MAAAIRGPAGCKLLLRARPWRQSRVASSCVRPPQPTTPSLREKDVLYMDN
HVLLINKPAGLLSQSDRTGDLDVTALAREYVRVAASKTGDAFVALVHRLD
RPVSGVMCVARTSKAAARLSESFRKRNGVTKVYHAVVAGNLTGSGTREDF
LVSPDEAGPSRGAVGGRGQR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006145PsdUridine_synth_RsuA/RluA
IPR020103PsdUridine_synth_cat_dom_sf