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Homology
BLAST of mRNA_P-lacustris_contig972.16048.1 vs. uniprot
Match: A0A6H5K762_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K762_9PHAE) HSP 1 Score: 84.0 bits (206), Expect = 3.310e-13 Identity = 53/112 (47.32%), Postives = 64/112 (57.14%), Query Frame = 0
Query: 12 VRRSWSAKIPFALRARTPAPDAG-----LDSGSSNGSYPLNSISRPHRALRLNECRSEGADITESDLKRMLRDSMGGDWRKALKALDGMNEHIG-LPDQKSYNMAITACGRG 117
VRR +PF LRA P DA D G+S NS S P R R + E + +++K+ML DS GDWRKAL+A+DGM + G L DQKSY MAITACGRG
Sbjct: 71 VRRWLKTGMPFELRALPPGSDAANNIARADGGNSKRPPLSNSRSGPSRPSRRRQGAVEAGTKSLTEMKKMLYDSRSGDWRKALRAVDGMKKLPGWLIDQKSYCMAITACGRG 182
BLAST of mRNA_P-lacustris_contig972.16048.1 vs. uniprot
Match: A0A6H5KWX4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWX4_9PHAE) HSP 1 Score: 78.2 bits (191), Expect = 2.650e-11 Identity = 52/123 (42.28%), Postives = 67/123 (54.47%), Query Frame = 0
Query: 3 RHEQNKDDFVRRSWSAKIPFALRARTPAPDAG------LDSGSSNGSYPLNSISRPHRALRLNECRSEGADITESDLKRMLRDSMGGDWRKALKALDGMNEHIG-LPDQKSYNMAITACGRGR 118
R + + RR A F LRA DA ++ G+ NG Y +S RP R + + EG + + L MLRDS GDWRKAL+ALDGM + G L DQ+S+ MAITACGRG+
Sbjct: 24 RRTRTNECAARRWREAGTLFELRALPRGSDAANNITSRVEGGARNGLYLPDSRPRPSRPVGKRQGVVEGRTKSRTKLTTMLRDSGSGDWRKALRALDGMRQLPGGLLDQESFCMAITACGRGK 146
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| IPR011990 | Tetratricopeptide-like helical domain superfamily | GENE3D | 1.25.40.10 | | coord: 57..185
e-value: 1.6E-29
score: 104.6 |
| IPR011990 | Tetratricopeptide-like helical domain superfamily | GENE3D | 1.25.40.10 | | coord: 342..413
e-value: 1.8E-19
score: 72.0 |
| IPR011990 | Tetratricopeptide-like helical domain superfamily | GENE3D | 1.25.40.10 | | coord: 425..578
e-value: 6.3E-51
score: 175.5
coord: 186..341
e-value: 8.8E-50
score: 171.8 |
| IPR002885 | Pentatricopeptide repeat | PFAM | PF01535 | PPR | coord: 175..204
e-value: 1.1E-5
score: 25.3 |
| IPR002885 | Pentatricopeptide repeat | PFAM | PF13041 | PPR_2 | coord: 207..256
e-value: 1.8E-10
score: 40.8
coord: 277..325
e-value: 1.3E-7
score: 31.7
coord: 417..466
e-value: 3.4E-11
score: 43.1
coord: 102..151
e-value: 2.4E-8
score: 34.0
coord: 487..536
e-value: 1.9E-12
score: 47.2
coord: 347..396
e-value: 3.9E-12
score: 46.2 |
| IPR002885 | Pentatricopeptide repeat | TIGRFAM | TIGR00756 | TIGR00756 | coord: 525..559
e-value: 7.8E-8
score: 30.0
coord: 315..349
e-value: 3.6E-6
score: 24.8
coord: 385..417
e-value: 1.4E-6
score: 26.1
coord: 420..452
e-value: 1.2E-6
score: 26.3
coord: 210..244
e-value: 5.6E-7
score: 27.3
coord: 350..384
e-value: 1.4E-7
score: 29.3
coord: 140..174
e-value: 2.4E-5
score: 22.2
coord: 245..278
e-value: 2.4E-5
score: 22.2
coord: 280..313
e-value: 4.1E-5
score: 21.5
coord: 106..139
e-value: 9.4E-7
score: 26.6
coord: 175..202
e-value: 8.7E-5
score: 20.5
coord: 490..524
e-value: 8.0E-7
score: 26.9
coord: 455..488
e-value: 2.0E-6
score: 25.6 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 418..452
score: 11.652 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 278..312
score: 11.685 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 243..277
score: 11.422 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 348..382
score: 12.463 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 558..581
score: 5.404 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 523..557
score: 12.299 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 488..522
score: 11.838 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 383..417
score: 12.222 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 138..172
score: 10.764 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 208..242
score: 11.455 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 103..137
score: 11.597 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 313..347
score: 10.622 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 173..207
score: 11.772 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 453..487
score: 11.663 |
| None | No IPR available | PANTHER | PTHR46128 | FAMILY NOT NAMED | coord: 301..446
coord: 239..376
coord: 346..481
coord: 85..247
coord: 441..571 |
Alignments
The following features are aligned
Analyses
This polypeptide is derived from or has results from the following analyses
Relationships
This polypeptide derives from the following mRNA feature(s):
Sequences
The following sequences are available for this feature:
polypeptide sequence >prot_P-lacustris_contig972.16048.1 ID=prot_P-lacustris_contig972.16048.1|Name=mRNA_P-lacustris_contig972.16048.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=582bp
MSRHEQNKDDFVRRSWSAKIPFALRARTPAPDAGLDSGSSNGSYPLNSIS
RPHRALRLNECRSEGADITESDLKRMLRDSMGGDWRKALKALDGMNEHIG
LPDQKSYNMAITACGRGRQWKEALRLLREMPTVGLTPDAISYSSAIAACA
KGNQWKKAVGLLKEMTTVGLTPDVISYSSAINACAKGNQWKEAVGLLKEM
RTIGLTPGVFSYTSAIDACAKGNRWKEALRLLREMTTVGLTPNAISYSSA
INACAKGNQWKEAVGLLKEMQTIGLTPDVVSYSSAIDACAKGNRWKEAVG
LLREIRRVGLTPGVISYSSAIAACANGSQWEEAVGLLKEMRTAGLTPNVI
SYNSAIDACAKGNRWKEALRLLREMTTVGLTPNAISYNSAIDACAKGNQW
KEALRLLREMTTVGLTPGVITYNSAIDACAKGNRLKEAIDLLREMPTVGL
TPGVITYNSAIDACAKGDRWKEAVGLLKEMRTIGLTPDVICYNSAIDACA
KGNQWKEAVGILKEMPRVGLTPNAITYTSAIDACAKGNQWKEALRLLREM
TTAGLTPDVITYNSAIDACAKGISGRRLSGC* back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR011990 | TPR-like_helical_dom_sf |
| IPR002885 | Pentatricopeptide_repeat |
|