mRNA_P-lacustris_contig972.16048.1 (mRNA) Pleurocladia lacustris SAG_25_93

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-lacustris_contig972.16048.1
Unique NamemRNA_P-lacustris_contig972.16048.1
TypemRNA
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Homology
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BLAST of mRNA_P-lacustris_contig972.16048.1 vs. uniprot
Match: A0A6H5K762_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K762_9PHAE)

HSP 1 Score: 91.7 bits (226), Expect = 3.030e-15
Identity = 64/151 (42.38%), Postives = 79/151 (52.32%), Query Frame = 2 
Query:   11 VSHRHSWHGARPRQKGGGASRGVSHTSRMSRHEQNKDDFVRRSWSAKIPFALRARTPAPDAG-----LDSGSSNGSYPLNSISRPHRALRLNECRSEGADITESDLKRMLRDSMGGDWRKALKALDGMNEHIG-LPDQKSYNMAITACGRG 445
            VS+R S H   P +     SR     SR+ R  +     VRR     +PF LRA  P  DA       D G+S      NS S P R  R  +   E    + +++K+ML DS  GDWRKAL+A+DGM +  G L DQKSY MAITACGRG
Sbjct:   32 VSNRQSSHDVMPPRDTCVTSRRAHRASRVYRRTRANGRAVRRWLKTGMPFELRALPPGSDAANNIARADGGNSKRPPLSNSRSGPSRPSRRRQGAVEAGTKSLTEMKKMLYDSRSGDWRKALRAVDGMKKLPGWLIDQKSYCMAITACGRG 182
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BLAST of mRNA_P-lacustris_contig972.16048.1 vs. uniprot
Match: A0A6H5KWX4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWX4_9PHAE)

HSP 1 Score: 89.0 bits (219), Expect = 2.760e-14
Identity = 59/142 (41.55%), Postives = 77/142 (54.23%), Query Frame = 2 
Query:   44 PRQKGGGASRGVSHTSRMSRHEQNKDDFVRRSWSAKIPFALRARTPAPDAG------LDSGSSNGSYPLNSISRPHRALRLNECRSEGADITESDLKRMLRDSMGGDWRKALKALDGMNEHIG-LPDQKSYNMAITACGRGR 448
            P ++  G  RG S  SR+ R  +  +   RR   A   F LRA     DA       ++ G+ NG Y  +S  RP R +   +   EG   + + L  MLRDS  GDWRKAL+ALDGM +  G L DQ+S+ MAITACGRG+
Sbjct:    5 PLREACGTPRGTSRASRLYRRTRTNECAARRWREAGTLFELRALPRGSDAANNITSRVEGGARNGLYLPDSRPRPSRPVGKRQGVVEGRTKSRTKLTTMLRDSGSGDWRKALRALDGMRQLPGGLLDQESFCMAITACGRGK 146
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig972.16048.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K762_9PHAE3.030e-1542.38Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6H5KWX4_9PHAE2.760e-1441.55Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig972contigP-lacustris_contig972:45065..47716 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score63.2
Seed ortholog evalue4.8e-07
Seed eggNOG ortholog2880.D8LII2
Hectar predicted targeting categoryother localisation
EggNOG free text desc.endonuclease activity
EggNOG OGsKOG4197@1,KOG4197@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size2652
Cds size1746
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig972.16048.1prot_P-lacustris_contig972.16048.1Pleurocladia lacustris SAG_25_93polypeptideP-lacustris_contig972 45159..46904 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817402.7468805-UTR-P-lacustris_contig972:45064..451581622817402.7468805-UTR-P-lacustris_contig972:45064..45158Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig972 45065..45158 +
1693495040.58296-UTR-P-lacustris_contig972:45064..451581693495040.58296-UTR-P-lacustris_contig972:45064..45158Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig972 45065..45158 +
1622817402.7719793-UTR-P-lacustris_contig972:46904..477161622817402.7719793-UTR-P-lacustris_contig972:46904..47716Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig972 46905..47716 +
1693495040.6084888-UTR-P-lacustris_contig972:46904..477161693495040.6084888-UTR-P-lacustris_contig972:46904..47716Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig972 46905..47716 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817402.759022-CDS-P-lacustris_contig972:45158..469041622817402.759022-CDS-P-lacustris_contig972:45158..46904Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig972 45159..46904 +
1693495040.599576-CDS-P-lacustris_contig972:45158..469041693495040.599576-CDS-P-lacustris_contig972:45158..46904Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig972 45159..46904 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-lacustris_contig972.16048.1

>prot_P-lacustris_contig972.16048.1 ID=prot_P-lacustris_contig972.16048.1|Name=mRNA_P-lacustris_contig972.16048.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=582bp
MSRHEQNKDDFVRRSWSAKIPFALRARTPAPDAGLDSGSSNGSYPLNSIS
RPHRALRLNECRSEGADITESDLKRMLRDSMGGDWRKALKALDGMNEHIG
LPDQKSYNMAITACGRGRQWKEALRLLREMPTVGLTPDAISYSSAIAACA
KGNQWKKAVGLLKEMTTVGLTPDVISYSSAINACAKGNQWKEAVGLLKEM
RTIGLTPGVFSYTSAIDACAKGNRWKEALRLLREMTTVGLTPNAISYSSA
INACAKGNQWKEAVGLLKEMQTIGLTPDVVSYSSAIDACAKGNRWKEAVG
LLREIRRVGLTPGVISYSSAIAACANGSQWEEAVGLLKEMRTAGLTPNVI
SYNSAIDACAKGNRWKEALRLLREMTTVGLTPNAISYNSAIDACAKGNQW
KEALRLLREMTTVGLTPGVITYNSAIDACAKGNRLKEAIDLLREMPTVGL
TPGVITYNSAIDACAKGDRWKEAVGLLKEMRTIGLTPDVICYNSAIDACA
KGNQWKEAVGILKEMPRVGLTPNAITYTSAIDACAKGNQWKEALRLLREM
TTAGLTPDVITYNSAIDACAKGISGRRLSGC*
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mRNA from alignment at P-lacustris_contig972:45065..47716+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-lacustris_contig972.16048.1 ID=mRNA_P-lacustris_contig972.16048.1|Name=mRNA_P-lacustris_contig972.16048.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=2652bp|location=Sequence derived from alignment at P-lacustris_contig972:45065..47716+ (Pleurocladia lacustris SAG_25_93)
AGGTACTGATGTTTCACATCGTCACAGTTGGCATGGTGCAAGGCCCCGGC
AAAAGGGCGGTGGTGCCTCGAGAGGGGTGTCCCACACCTCCCGCATGTCT
CGACATGAACAGAACAAGGATGACTTCGTCCGACGATCATGGTCAGCCAA
GATACCGTTCGCGCTCAGGGCTCGAACTCCTGCCCCCGACGCTGGGCTTG
ATAGCGGATCTTCCAACGGTTCATACCCTCTAAATTCAATATCTAGGCCA
CACCGAGCGCTGAGATTAAATGAGTGTCGTTCGGAGGGGGCTGATATAAC
AGAGTCGGATTTAAAAAGGATGCTACGCGATTCGATGGGCGGTGACTGGA
GGAAAGCGCTCAAAGCTCTTGATGGCATGAATGAGCATATCGGGCTCCCT
GATCAAAAGTCGTACAATATGGCCATCACGGCGTGTGGACGAGGGCGGCA
GTGGAAGGAGGCTCTGAGGTTGCTGAGAGAGATGCCGACGGTAGGGCTAA
CCCCCGATGCCATCAGCTACAGCTCAGCCATCGCTGCTTGTGCAAAGGGG
AATCAGTGGAAGAAGGCTGTGGGCCTCTTGAAAGAGATGACGACAGTAGG
GCTAACTCCCGATGTCATCAGCTACAGCTCAGCCATCAATGCTTGTGCAA
AGGGGAATCAGTGGAAGGAGGCTGTGGGCCTCTTGAAAGAGATGCGGACG
ATAGGGTTAACCCCCGGTGTCTTCAGCTACACCTCAGCCATCGATGCTTG
TGCAAAGGGGAATCGGTGGAAGGAGGCTCTCAGGTTGCTGAGAGAGATGA
CGACAGTAGGGCTAACCCCCAATGCCATCAGCTACAGCTCAGCCATCAAT
GCTTGTGCAAAGGGGAATCAGTGGAAGGAGGCTGTGGGCCTTTTGAAAGA
GATGCAGACGATAGGGTTAACCCCCGATGTCGTCAGCTACAGCTCAGCCA
TCGATGCTTGTGCAAAGGGGAATCGGTGGAAGGAGGCTGTGGGCCTTTTG
AGAGAGATACGGAGGGTAGGGCTAACCCCGGGTGTCATCAGCTACAGCTC
AGCCATCGCTGCTTGTGCAAACGGCAGTCAGTGGGAGGAGGCCGTGGGCC
TTTTGAAAGAGATGCGGACGGCAGGGCTAACCCCCAATGTCATCAGCTAC
AACTCAGCCATCGATGCTTGTGCAAAGGGGAATCGGTGGAAGGAGGCTCT
CAGGTTGCTGAGAGAGATGACGACAGTAGGGCTAACCCCCAATGCCATCA
GCTACAACTCAGCCATCGATGCTTGTGCAAAGGGGAATCAGTGGAAGGAG
GCTCTCAGGTTGCTGAGAGAGATGACGACAGTAGGGCTAACTCCCGGTGT
CATCACCTACAACTCAGCCATCGATGCTTGTGCAAAGGGGAATCGGTTGA
AGGAGGCTATCGATTTACTGAGAGAGATGCCGACGGTAGGGCTAACTCCC
GGTGTCATCACCTACAACTCAGCCATCGATGCTTGTGCAAAGGGGGATCG
GTGGAAGGAGGCTGTGGGCCTCCTAAAAGAGATGCGGACGATAGGGTTAA
CCCCCGATGTCATCTGCTACAACTCAGCCATCGATGCTTGTGCAAAGGGG
AATCAGTGGAAGGAGGCTGTGGGCATTTTGAAAGAGATGCCGAGGGTAGG
GCTAACCCCCAATGCCATCACCTACACCTCAGCCATCGATGCTTGTGCGA
AGGGGAATCAGTGGAAGGAGGCTCTCAGGTTGCTGAGAGAGATGACGACA
GCAGGGCTAACCCCCGATGTCATCACCTACAACTCAGCCATCGATGCTTG
TGCAAAGGGAATCAGTGGAAGGAGGCTCTCAGGTTGCTGATTGAGATGAC
GACAGTAGGGCTAACCCCCGATGTCATCAGCTACAGCTCAGCCATCAATG
CTTGTGCAAAAGGTGATCAGTGGGAGATGGCTGTGGGCCTCTTGGAAGAG
ATGCGGACGGCAGGGCTAACCCCGGATGTCGTCAGCTACAGCTCAGCCAT
CGATGCTTGTGCAAGAGGTGATCAGTCGAAGGAGGCTATCGATCTACTGG
GAGAGATGCCGACTGTAGGGCTAACCCCCAAAATGTGATCAGCTACAGCT
CAGCCATCGATGCTTGTGTAAATGGGAATCAGTGGAAGGAGGCTCTCAGG
TTGCTGAGAGAGATGACGACGCTAGGGCTAACCCCCGATGCCATCGTCTA
CAGCTCAGCCATCAATGCTTGTGCAAAGGGGAATCAGTGAAAGGAGGCTA
TGGGCCTCTTGAAAGAGATGCGGACGGTATAGGGTCAAACCCCGATGTCA
TCAGCTACAACTCAGCCACCGATGCTTGTGCAAATGGGAATCAGTGGGAG
GAGGCCGTGGGCCTTTTGAAAGAGATGCGGACGGTATAGGGTTAACCCCG
ATGTCATCAGCTACAGCTCAGCCGTCGCTGCTTTCTCATAGGGATGTCAG
TGGTAGTAGCCCGGGGGTATATAGCTTCCGGCCTGAAGTAAAGCCCAGGC
ATTTTTTTGTATTAATGCGATGGTCCTTTCTGGGCGAGAAGATGAATGGG
TCGGTTGCGAAAAAGGCGACGCAGCAAGGCAGCCGTAGCAGTAAAAAAAG
TTGTTAAGCTCACTAATGTAACCCACTACAAGCTGGTTCAAGGTCAACGG
GG
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Coding sequence (CDS) from alignment at P-lacustris_contig972:45065..47716+

>mRNA_P-lacustris_contig972.16048.1 ID=mRNA_P-lacustris_contig972.16048.1|Name=mRNA_P-lacustris_contig972.16048.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=3492bp|location=Sequence derived from alignment at P-lacustris_contig972:45065..47716+ (Pleurocladia lacustris SAG_25_93)
ATGTCTCGACATGAACAGAACAAGGATGACTTCGTCCGACGATCATGGTC
AGCCAAGATACCGTTCGCGCTCAGGGCTCGAACTCCTGCCCCCGACGCTG
GGCTTGATAGCGGATCTTCCAACGGTTCATACCCTCTAAATTCAATATCT
AGGCCACACCGAGCGCTGAGATTAAATGAGTGTCGTTCGGAGGGGGCTGA
TATAACAGAGTCGGATTTAAAAAGGATGCTACGCGATTCGATGGGCGGTG
ACTGGAGGAAAGCGCTCAAAGCTCTTGATGGCATGAATGAGCATATCGGG
CTCCCTGATCAAAAGTCGTACAATATGGCCATCACGGCGTGTGGACGAGG
GCGGCAGTGGAAGGAGGCTCTGAGGTTGCTGAGAGAGATGCCGACGGTAG
GGCTAACCCCCGATGCCATCAGCTACAGCTCAGCCATCGCTGCTTGTGCA
AAGGGGAATCAGTGGAAGAAGGCTGTGGGCCTCTTGAAAGAGATGACGAC
AGTAGGGCTAACTCCCGATGTCATCAGCTACAGCTCAGCCATCAATGCTT
GTGCAAAGGGGAATCAGTGGAAGGAGGCTGTGGGCCTCTTGAAAGAGATG
CGGACGATAGGGTTAACCCCCGGTGTCTTCAGCTACACCTCAGCCATCGA
TGCTTGTGCAAAGGGGAATCGGTGGAAGGAGGCTCTCAGGTTGCTGAGAG
AGATGACGACAGTAGGGCTAACCCCCAATGCCATCAGCTACAGCTCAGCC
ATCAATGCTTGTGCAAAGGGGAATCAGTGGAAGGAGGCTGTGGGCCTTTT
GAAAGAGATGCAGACGATAGGGTTAACCCCCGATGTCGTCAGCTACAGCT
CAGCCATCGATGCTTGTGCAAAGGGGAATCGGTGGAAGGAGGCTGTGGGC
CTTTTGAGAGAGATACGGAGGGTAGGGCTAACCCCGGGTGTCATCAGCTA
CAGCTCAGCCATCGCTGCTTGTGCAAACGGCAGTCAGTGGGAGGAGGCCG
TGGGCCTTTTGAAAGAGATGCGGACGGCAGGGCTAACCCCCAATGTCATC
AGCTACAACTCAGCCATCGATGCTTGTGCAAAGGGGAATCGGTGGAAGGA
GGCTCTCAGGTTGCTGAGAGAGATGACGACAGTAGGGCTAACCCCCAATG
CCATCAGCTACAACTCAGCCATCGATGCTTGTGCAAAGGGGAATCAGTGG
AAGGAGGCTCTCAGGTTGCTGAGAGAGATGACGACAGTAGGGCTAACTCC
CGGTGTCATCACCTACAACTCAGCCATCGATGCTTGTGCAAAGGGGAATC
GGTTGAAGGAGGCTATCGATTTACTGAGAGAGATGCCGACGGTAGGGCTA
ACTCCCGGTGTCATCACCTACAACTCAGCCATCGATGCTTGTGCAAAGGG
GGATCGGTGGAAGGAGGCTGTGGGCCTCCTAAAAGAGATGCGGACGATAG
GGTTAACCCCCGATGTCATCTGCTACAACTCAGCCATCGATGCTTGTGCA
AAGGGGAATCAGTGGAAGGAGGCTGTGGGCATTTTGAAAGAGATGCCGAG
GGTAGGGCTAACCCCCAATGCCATCACCTACACCTCAGCCATCGATGCTT
GTGCGAAGGGGAATCAGTGGAAGGAGGCTCTCAGGTTGCTGAGAGAGATG
ACGACAGCAGGGCTAACCCCCGATGTCATCACCTACAACTCAGCCATCGA
TGCTTGTGCAAAGGGAATCAGTGGAAGGAGGCTCTCAGGTTGCTGAATGT
CTCGACATGAACAGAACAAGGATGACTTCGTCCGACGATCATGGTCAGCC
AAGATACCGTTCGCGCTCAGGGCTCGAACTCCTGCCCCCGACGCTGGGCT
TGATAGCGGATCTTCCAACGGTTCATACCCTCTAAATTCAATATCTAGGC
CACACCGAGCGCTGAGATTAAATGAGTGTCGTTCGGAGGGGGCTGATATA
ACAGAGTCGGATTTAAAAAGGATGCTACGCGATTCGATGGGCGGTGACTG
GAGGAAAGCGCTCAAAGCTCTTGATGGCATGAATGAGCATATCGGGCTCC
CTGATCAAAAGTCGTACAATATGGCCATCACGGCGTGTGGACGAGGGCGG
CAGTGGAAGGAGGCTCTGAGGTTGCTGAGAGAGATGCCGACGGTAGGGCT
AACCCCCGATGCCATCAGCTACAGCTCAGCCATCGCTGCTTGTGCAAAGG
GGAATCAGTGGAAGAAGGCTGTGGGCCTCTTGAAAGAGATGACGACAGTA
GGGCTAACTCCCGATGTCATCAGCTACAGCTCAGCCATCAATGCTTGTGC
AAAGGGGAATCAGTGGAAGGAGGCTGTGGGCCTCTTGAAAGAGATGCGGA
CGATAGGGTTAACCCCCGGTGTCTTCAGCTACACCTCAGCCATCGATGCT
TGTGCAAAGGGGAATCGGTGGAAGGAGGCTCTCAGGTTGCTGAGAGAGAT
GACGACAGTAGGGCTAACCCCCAATGCCATCAGCTACAGCTCAGCCATCA
ATGCTTGTGCAAAGGGGAATCAGTGGAAGGAGGCTGTGGGCCTTTTGAAA
GAGATGCAGACGATAGGGTTAACCCCCGATGTCGTCAGCTACAGCTCAGC
CATCGATGCTTGTGCAAAGGGGAATCGGTGGAAGGAGGCTGTGGGCCTTT
TGAGAGAGATACGGAGGGTAGGGCTAACCCCGGGTGTCATCAGCTACAGC
TCAGCCATCGCTGCTTGTGCAAACGGCAGTCAGTGGGAGGAGGCCGTGGG
CCTTTTGAAAGAGATGCGGACGGCAGGGCTAACCCCCAATGTCATCAGCT
ACAACTCAGCCATCGATGCTTGTGCAAAGGGGAATCGGTGGAAGGAGGCT
CTCAGGTTGCTGAGAGAGATGACGACAGTAGGGCTAACCCCCAATGCCAT
CAGCTACAACTCAGCCATCGATGCTTGTGCAAAGGGGAATCAGTGGAAGG
AGGCTCTCAGGTTGCTGAGAGAGATGACGACAGTAGGGCTAACTCCCGGT
GTCATCACCTACAACTCAGCCATCGATGCTTGTGCAAAGGGGAATCGGTT
GAAGGAGGCTATCGATTTACTGAGAGAGATGCCGACGGTAGGGCTAACTC
CCGGTGTCATCACCTACAACTCAGCCATCGATGCTTGTGCAAAGGGGGAT
CGGTGGAAGGAGGCTGTGGGCCTCCTAAAAGAGATGCGGACGATAGGGTT
AACCCCCGATGTCATCTGCTACAACTCAGCCATCGATGCTTGTGCAAAGG
GGAATCAGTGGAAGGAGGCTGTGGGCATTTTGAAAGAGATGCCGAGGGTA
GGGCTAACCCCCAATGCCATCACCTACACCTCAGCCATCGATGCTTGTGC
GAAGGGGAATCAGTGGAAGGAGGCTCTCAGGTTGCTGAGAGAGATGACGA
CAGCAGGGCTAACCCCCGATGTCATCACCTACAACTCAGCCATCGATGCT
TGTGCAAAGGGAATCAGTGGAAGGAGGCTCTCAGGTTGCTGA
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