prot_P-lacustris_contig947.15852.1 (polypeptide) Pleurocladia lacustris SAG_25_93

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_P-lacustris_contig947.15852.1
Unique Name	prot_P-lacustris_contig947.15852.1
Type	polypeptide
Organism	Pleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Sequence length	220

Homology

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BLAST of mRNA_P-lacustris_contig947.15852.1 vs. uniprot
Match: D7G7Q6_ECTSI (Light harvesting complex protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7Q6_ECTSI)

HSP 1 Score: 357 bits (917), Expect = 1.620e-123
Identity = 190/221 (85.97%), Postives = 200/221 (90.50%), Query Frame = 0

Query:    1 MVASQMFLGTAATLIASSTAFVAPMAAVRSVAPASSSS-LKMSAGSDYVATLPGA-LPDGKIFDPLGLSDGAAPGEIKKWREAEIKHGRVAMLASLGVLVAEQYHPFFMGPDYIGPAVDHFQEISAQYPEFWAFSLLGMAFIEYNTIVTAFASPSFVTGEGGLKEDYSPGDLGFDPLRIKPKTEKALDTMKTKELNNGRLAMIGIAGMLVQELVKPENIFG 219
            MVA+Q+FLG+AATLIASSTAFVAPMA VRS APASSSS LKMSAGSDYVATLPGA   DGKIFDPL LSDGA P +IKKWREAEIKHGRVAMLASLGVLVAEQYHP FMGPDYIGPAVDHFQEISAQYPEFW FSLLGMAFIEYNTI+TAF +PS VTGEGGLKEDY PGDLGFDPL +KP+ E ALD MKTKELNNGRLAMIGIAGMLVQEL+ P +I G
Sbjct:    1 MVATQLFLGSAATLIASSTAFVAPMA-VRSAAPASSSSALKMSAGSDYVATLPGAPFGDGKIFDPLNLSDGADPADIKKWREAEIKHGRVAMLASLGVLVAEQYHPLFMGPDYIGPAVDHFQEISAQYPEFWVFSLLGMAFIEYNTIMTAFETPSAVTGEGGLKEDYVPGDLGFDPLNLKPEDEAALDVMKTKELNNGRLAMIGIAGMLVQELINPADILG 220

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BLAST of mRNA_P-lacustris_contig947.15852.1 vs. uniprot
Match: D7G7Q9_ECTSI (Light harvesting complex protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7Q9_ECTSI)

HSP 1 Score: 343 bits (880), Expect = 8.050e-118
Identity = 183/219 (83.56%), Postives = 197/219 (89.95%), Query Frame = 0

Query:    1 MVASQMFLGTAATLIASSTAFVAPMAAVRSVAPASSSS-LKMSAGSDYVATLPGA-LPDGKIFDPLGLSDGAAPGEIKKWREAEIKHGRVAMLASLGVLVAEQYHPFFMGPDYIGPAVDHFQEISAQYPEFWAFSLLGMAFIEYNTIVTAFASPSFVTGEGGLKEDYSPGDLGFDPLRIKPKTEKALDTMKTKELNNGRLAMIGIAGMLVQELVKPENI 217
            MVASQMFLGTAA LIASSTAFVAP+A VRS APAS++S LKMSAGSDYVATLPGA   DGKIFDPL LSDGAAPG+IKKWREAEIKHGRVAMLASLG+LVAE+YHP FMG D+IGPA+ HFQEISAQ+PEFWAFSLLGMAFIEYNTI+TAF +PS VTGEGGLKEDY PGDLGFDPL +KP  E ALD MKTKELNNGRLAMIGIAGML QELV  ++I
Sbjct:    1 MVASQMFLGTAAALIASSTAFVAPVA-VRSAAPASAASALKMSAGSDYVATLPGAPFSDGKIFDPLSLSDGAAPGDIKKWREAEIKHGRVAMLASLGILVAEEYHPLFMGKDFIGPAIIHFQEISAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYIPGDLGFDPLNLKPDGEAALDVMKTKELNNGRLAMIGIAGMLAQELVNGQDI 218

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BLAST of mRNA_P-lacustris_contig947.15852.1 vs. uniprot
Match: D7G7S1_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7S1_ECTSI)

HSP 1 Score: 342 bits (878), Expect = 1.460e-117
Identity = 181/218 (83.03%), Postives = 195/218 (89.45%), Query Frame = 0

Query:    4 SQMFLGTAATLIASSTAFVAPMAAVRSVAPASSSS-LKMSAGSDYVATLPGA-LPDGKIFDPLGLSDGAAPGEIKKWREAEIKHGRVAMLASLGVLVAEQYHPFFMGPDYIGPAVDHFQEISAQYPEFWAFSLLGMAFIEYNTIVTAFASPSFVTGEGGLKEDYSPGDLGFDPLRIKPKTEKALDTMKTKELNNGRLAMIGIAGMLVQELVKPENIFG 219
            S MFLGTAATLIASSTAFVAPMA VRS APASS+S LKMSAGSDYVATLPGA   DGKIFDPL LSDGA PGEIK WREAEIKHGRVAMLA++GV+VAEQYHP FMGPDYIGPAVDHFQEISAQ+PEFWAFSLLGMAFIEYNTI  A+A PS VTGEGGL+++YSPGDLGFDPL +KPK +  L+ M+TKELNNGRLAMIGIAGMLVQELV P +I G
Sbjct:    5 SNMFLGTAATLIASSTAFVAPMA-VRSAAPASSASALKMSAGSDYVATLPGAPFGDGKIFDPLELSDGAEPGEIKLWREAEIKHGRVAMLATVGVIVAEQYHPLFMGPDYIGPAVDHFQEISAQFPEFWAFSLLGMAFIEYNTITKAYAEPSPVTGEGGLRDEYSPGDLGFDPLNLKPKDQAGLEKMQTKELNNGRLAMIGIAGMLVQELVNPADILG 221

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BLAST of mRNA_P-lacustris_contig947.15852.1 vs. uniprot
Match: D7G7S0_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7S0_ECTSI)

HSP 1 Score: 320 bits (820), Expect = 8.920e-109
Identity = 168/217 (77.42%), Postives = 191/217 (88.02%), Query Frame = 0

Query:    4 SQMFLGTAATLIASSTAFVAPMAAVRSVAPASSSS-LKMSAGSDYVATLPGALPDGKIFDPLGLSDGAAPGEIKKWREAEIKHGRVAMLASLGVLVAEQYHPFFMGPDYIGPAVDHFQEISAQYPEFWAFSLLGMAFIEYNTIVTAFASPSFVTGEGGLKEDYSPGDLGFDPLRIKPKTEKALDTMKTKELNNGRLAMIGIAGMLVQELVKPENIFG 219
            S MFLGTAATLIASS AFV PMA VRS APASS+S LKMSAG+DY+ATLPGA  +GKIFD L L+DGA PGEIK WREAEIKHGRVAMLA++GV+VAEQYHPFFMGPDYIGPAVDHFQEI+A++P+FWA+SLLGMAFIEYNTI  A+A PS VTGEGGL+++YSPGDLGFDP +IKPK +  L+ M+ KELNNGRLAMIGI GMLVQELV  ++I G
Sbjct:    5 SNMFLGTAATLIASSAAFVTPMA-VRSAAPASSASALKMSAGTDYLATLPGA--NGKIFDLLELADGADPGEIKLWREAEIKHGRVAMLATVGVVVAEQYHPFFMGPDYIGPAVDHFQEITAKFPQFWAYSLLGMAFIEYNTIKKAYAEPSPVTGEGGLRDEYSPGDLGFDPAKIKPKDQAGLEKMQNKELNNGRLAMIGIVGMLVQELVNGQDILG 218

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BLAST of mRNA_P-lacustris_contig947.15852.1 vs. uniprot
Match: D7G7S5_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7S5_ECTSI)

HSP 1 Score: 293 bits (750), Expect = 1.890e-98
Identity = 140/161 (86.96%), Postives = 149/161 (92.55%), Query Frame = 0

Query:   59 KIFDPLGLSDGAAPGEIKKWREAEIKHGRVAMLASLGVLVAEQYHPFFMGPDYIGPAVDHFQEISAQYPEFWAFSLLGMAFIEYNTIVTAFASPSFVTGEGGLKEDYSPGDLGFDPLRIKPKTEKALDTMKTKELNNGRLAMIGIAGMLVQELVKPENIFG 219
            +IFDPLGLSDGAAPG+IKKWREAEIKHGRVAMLASLGV+VAEQYHPFFMGPDYIGPAVDHFQEISAQ+PEFWAFSLLGMAF+EYNTI+TAF +PS VTGEGGLKEDY PGDLGFDPL +KP  E ALD MKTKELNNGRLAMIGIAGML QELV P +I G
Sbjct:   36 QIFDPLGLSDGAAPGDIKKWREAEIKHGRVAMLASLGVIVAEQYHPFFMGPDYIGPAVDHFQEISAQFPEFWAFSLLGMAFVEYNTIMTAFDTPSAVTGEGGLKEDYIPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADILG 196

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BLAST of mRNA_P-lacustris_contig947.15852.1 vs. uniprot
Match: A0A6H5JWB4_9PHAE (LHCP protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWB4_9PHAE)

HSP 1 Score: 294 bits (752), Expect = 5.960e-96
Identity = 141/161 (87.58%), Postives = 149/161 (92.55%), Query Frame = 0

Query:   59 KIFDPLGLSDGAAPGEIKKWREAEIKHGRVAMLASLGVLVAEQYHPFFMGPDYIGPAVDHFQEISAQYPEFWAFSLLGMAFIEYNTIVTAFASPSFVTGEGGLKEDYSPGDLGFDPLRIKPKTEKALDTMKTKELNNGRLAMIGIAGMLVQELVKPENIFG 219
            +IFDPLGLSDGAAPG+IKKWREAEIKHGRVAMLASLGV+VAEQYHPFFMGPDYIGPAVDHFQEISAQ+PEFWAFSLLGMAFIEYNTI+TAF +PS VTGEGGLKEDY PGDLGFDPL +KP  E ALD MKTKELNNGRLAMIGIAGML QELV P +I G
Sbjct:  232 QIFDPLGLSDGAAPGDIKKWREAEIKHGRVAMLASLGVIVAEQYHPFFMGPDYIGPAVDHFQEISAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYMPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADILG 392

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BLAST of mRNA_P-lacustris_contig947.15852.1 vs. uniprot
Match: A0A6H5K8D0_9PHAE (LHCP protein n=7 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K8D0_9PHAE)

HSP 1 Score: 285 bits (729), Expect = 2.580e-95
Identity = 164/221 (74.21%), Postives = 171/221 (77.38%), Query Frame = 0

Query:    1 MVASQMFLGTAATLIASSTAFVAPMAAVRSVAPASSS-SLKMSAGSDYVATLPGA-LPDGKIFDPLGLSDGAAPGEIKKWREAEIKHGRVAMLASLGVLVAEQYHPFFMGPDYIGPAVDHFQEISAQYPEFWAFSLLGMAFIEYNTIVTAFASPSFVTGEGGLKEDYSPGDLGFDPLRIKPKTEKALDTMKTKELNNGRLAMIGIAGMLVQELVKPENIFG 219
            MVASQMF+GTAATLIASSTAFVAPMA VRSV    SS  LKMSAGSDYVATLPGA   DGKIFDPLGLSDGAAPG+IKKWREAEIKHGRVAMLASLGV+VAE                            FWAFSLLGMAFIEYNTI+TAF +PS VTGEGGLKEDY PGDLGFDPL +KP  E ALD MKTKELNNGRLAMIGIAGML QELV P +I G
Sbjct:    1 MVASQMFIGTAATLIASSTAFVAPMA-VRSVTTTPSSPGLKMSAGSDYVATLPGAPFSDGKIFDPLGLSDGAAPGDIKKWREAEIKHGRVAMLASLGVIVAE----------------------------FWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYMPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADILG 192

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BLAST of mRNA_P-lacustris_contig947.15852.1 vs. uniprot
Match: D7G7Q7_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7Q7_ECTSI)

HSP 1 Score: 274 bits (701), Expect = 2.920e-91
Identity = 130/159 (81.76%), Postives = 144/159 (90.57%), Query Frame = 0

Query:   59 KIFDPLGLSDGAAPGEIKKWREAEIKHGRVAMLASLGVLVAEQYHPFFMGPDYIGPAVDHFQEISAQYPEFWAFSLLGMAFIEYNTIVTAFASPSFVTGEGGLKEDYSPGDLGFDPLRIKPKTEKALDTMKTKELNNGRLAMIGIAGMLVQELVKPENI 217
            KIFDPLGL+DGA  G+IK WREAEIKHGRVAMLASLGVLVAE+YHPFFMGPDYIGPAVDHFQEISA++PEFWAFSLL +A IEYNTI  A+A PSFVTGEGGL+++YSPGDLGFDPL +KP  + AL+TM+TKELNNGRLAMIGIAG LVQELV P NI
Sbjct:   15 KIFDPLGLADGAEVGDIKLWREAEIKHGRVAMLASLGVLVAEEYHPFFMGPDYIGPAVDHFQEISARFPEFWAFSLLALALIEYNTITKAYAEPSFVTGEGGLRDEYSPGDLGFDPLNLKPTDQTALETMQTKELNNGRLAMIGIAGTLVQELVNPTNI 173

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BLAST of mRNA_P-lacustris_contig947.15852.1 vs. uniprot
Match: D7G5B4_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5B4_ECTSI)

HSP 1 Score: 257 bits (656), Expect = 4.520e-83
Identity = 132/212 (62.26%), Postives = 164/212 (77.36%), Query Frame = 0

Query:    9 GTAATLIASSTAFVAPMAAVRSVAPASSSSLKMSAGSDYVATLPGA-LPDGKIFDPLGLSDGAAPGEIKKWREAEIKHGRVAMLASLGVLVAEQYHPFFMGPDYIGPAVDHFQEISAQYPEFWAFSLLGMAFIEYNTIVTAFASPSFVTGEGGLKEDYSPGDLGFDPLRIKPKTEKALDTMKTKELNNGRLAMIGIAGMLVQELVKPENIFG 219
            G A+   AS  AF+ P     S  P S+++ +MSAGSDYV+TLPGA   DGK++DP+GLS  A P +IKKWREAEIKHGRVAMLAS+GVLVAE +HP F+GPDYIGPA+ HF+EI+A++P+FWA +LL +A++EY  I   FA    VTGEGG++ DY PGDLGFDPL + P+ E  L+ MKTKELN+GRLAMIGI GM+VQELV+P  IFG
Sbjct:   61 GMASWCFASCEAFIVPTPTTLSARPTSTAA-RMSAGSDYVSTLPGAPFADGKVWDPVGLSSEADPEDIKKWREAEIKHGRVAMLASVGVLVAENFHPLFLGPDYIGPAIFHFEEITARFPQFWALTLLAIAWLEYRQINIGFAELDPVTGEGGMRLDYVPGDLGFDPLGLAPEDEHELNVMKTKELNHGRLAMIGITGMIVQELVRPLPIFG 271

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BLAST of mRNA_P-lacustris_contig947.15852.1 vs. uniprot
Match: D7FQG7_ECTSI (Light harvesting complex protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQG7_ECTSI)

HSP 1 Score: 233 bits (593), Expect = 4.440e-74
Identity = 130/223 (58.30%), Postives = 163/223 (73.09%), Query Frame = 0

Query:    1 MVASQMFLGTAATLIASSTAFVAPMAAVRS--VAPASSSSLKMSAGSDYVATLPGA----LPDGKIFDPLGLSDGAAPGEIKKWREAEIKHGRVAMLASLGVLVAEQYHPFFMGPDYIGPAVDHFQEISAQYPEFWAFSLLGMAFIEYNTIVTAFASPSFVTGEGGLKEDYSPGDLGFDPLRIKPKTEKALDTMKTKELNNGRLAMIGIAGMLVQELVKPENI 217
            MV SQ+FLGTAATLIASS AFVAP+AA RS     A+SS+ KM+AGSDY A+LPGA      +GK FDP GL+    P  IKKWREAE+KHGRV+MLA++G+LV+E +HP FMGP YIGPAV+H Q+I+  YP FW  SL  +AFIE  TI  A+ + S VTG G LK +Y PGDLGFDPL + PK  +    ++++EL+ GR AMIG+ GM+VQE+V  + I
Sbjct:    1 MVTSQLFLGTAATLIASSAAFVAPIAAPRSSIARVAASSTPKMTAGSDYAASLPGAPFGMAAEGKYFDPAGLATNQDPETIKKWREAELKHGRVSMLAAVGILVSEVFHPLFMGPAYIGPAVEHAQQIATVYPLFWVASLGMIAFIEGQTIKDAWGTVSPVTGVGNLKTEYYPGDLGFDPLGLAPKDGEDFRLIQSQELDLGRYAMIGVLGMIVQEVVDGKGI 223

The following BLAST results are available for this feature:

BLAST of mRNA_P-lacustris_contig947.15852.1 vs. uniprot

BLAST of mRNA_P-lacustris_contig947.15852.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D7G7Q6_ECTSI	1.620e-123	85.97	Light harvesting complex protein n=2 Tax=Ectocarpu...	[more]
D7G7Q9_ECTSI	8.050e-118	83.56	Light harvesting complex protein n=2 Tax=Ectocarpu...	[more]
D7G7S1_ECTSI	1.460e-117	83.03	Light harvesting complex protein n=1 Tax=Ectocarpu...	[more]
D7G7S0_ECTSI	8.920e-109	77.42	Light harvesting complex protein n=1 Tax=Ectocarpu...	[more]
D7G7S5_ECTSI	1.890e-98	86.96	Light harvesting complex protein n=1 Tax=Ectocarpu...	[more]
A0A6H5JWB4_9PHAE	5.960e-96	87.58	LHCP protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 T...	[more]
A0A6H5K8D0_9PHAE	2.580e-95	74.21	LHCP protein n=7 Tax=Ectocarpus TaxID=2879 RepID=A...	[more]
D7G7Q7_ECTSI	2.920e-91	81.76	Light harvesting complex protein n=1 Tax=Ectocarpu...	[more]
D7G5B4_ECTSI	4.520e-83	62.26	Light harvesting complex protein n=1 Tax=Ectocarpu...	[more]
D7FQG7_ECTSI	4.440e-74	58.30	Light harvesting complex protein n=2 Tax=Ectocarpu...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR022796	Chlorophyll A-B binding protein	PFAM	PF00504	Chloroa_b-bind	coord: 49..210 e-value: 2.9E-37 score: 128.7
IPR023329	Chlorophyll a/b binding domain superfamily	GENE3D	1.10.3460.10		coord: 37..219 e-value: 5.6E-38 score: 132.5
None	No IPR available	PANTHER	PTHR21649:SF63		coord: 10..213
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_C_REGION	Signal peptide C-region	coord: 19..36
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_H_REGION	Signal peptide H-region	coord: 7..18
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE	Signal Peptide	coord: 1..36
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_N_REGION	Signal peptide N-region	coord: 1..6
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 37..219
None	No IPR available	SIGNALP_EUK	SignalP-noTM	SignalP-noTM	coord: 1..20 score: 0.541
None	No IPR available	SUPERFAMILY	103511	Chlorophyll a-b binding protein	coord: 49..218
IPR001344	Chlorophyll A-B binding protein, plant	PANTHER	PTHR21649	CHLOROPHYLL A/B BINDING PROTEIN	coord: 10..213

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
P-lacustris_contig947	contig	P-lacustris_contig947:55027..57009 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Pleurocladia lacustris SAG_25_93	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_P-lacustris_contig947.15852.1	mRNA_P-lacustris_contig947.15852.1	Pleurocladia lacustris SAG_25_93	mRNA	P-lacustris_contig947 54858..58124 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_P-lacustris_contig947.15852.1 ID=prot_P-lacustris_contig947.15852.1|Name=mRNA_P-lacustris_contig947.15852.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=220bp
MVASQMFLGTAATLIASSTAFVAPMAAVRSVAPASSSSLKMSAGSDYVAT
LPGALPDGKIFDPLGLSDGAAPGEIKKWREAEIKHGRVAMLASLGVLVAE
QYHPFFMGPDYIGPAVDHFQEISAQYPEFWAFSLLGMAFIEYNTIVTAFA
SPSFVTGEGGLKEDYSPGDLGFDPLRIKPKTEKALDTMKTKELNNGRLAM
IGIAGMLVQELVKPENIFG*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR022796	Chloroa_b-bind
IPR023329	Chlorophyll_a/b-bd_dom_sf
IPR001344	Chloro_AB-bd_pln