mRNA_P-lacustris_contig947.15852.1 (mRNA) Pleurocladia lacustris SAG_25_93

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-lacustris_contig947.15852.1
Unique NamemRNA_P-lacustris_contig947.15852.1
TypemRNA
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Homology
[Close]
BLAST of mRNA_P-lacustris_contig947.15852.1 vs. uniprot
Match: D7G7Q6_ECTSI (Light harvesting complex protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7Q6_ECTSI)

HSP 1 Score: 358 bits (919), Expect = 1.910e-117
Identity = 190/221 (85.97%), Postives = 200/221 (90.50%), Query Frame = 2 
Query:  170 MVASQMFLGTAATLIASSTAFVAPMAAVRSVAPASSSS-LKMSAGSDYVATLPGA-LPDGKIFDPLGLSDGAAPGEIKKWREAEIKHGRVAMLASLGVLVAEQYHPFFMGPDYIGPAVDHFQEISAQYPEFWAFSLLGMAFIEYNTIVTAFASPSFVTGEGGLKEDYSPGDLGFDPLRIKPKTEKALDTMKTKELNNGRLAMIGIAGMLVQELVKPENIFG 826
            MVA+Q+FLG+AATLIASSTAFVAPMA VRS APASSSS LKMSAGSDYVATLPGA   DGKIFDPL LSDGA P +IKKWREAEIKHGRVAMLASLGVLVAEQYHP FMGPDYIGPAVDHFQEISAQYPEFW FSLLGMAFIEYNTI+TAF +PS VTGEGGLKEDY PGDLGFDPL +KP+ E ALD MKTKELNNGRLAMIGIAGMLVQEL+ P +I G
Sbjct:    1 MVATQLFLGSAATLIASSTAFVAPMA-VRSAAPASSSSALKMSAGSDYVATLPGAPFGDGKIFDPLNLSDGADPADIKKWREAEIKHGRVAMLASLGVLVAEQYHPLFMGPDYIGPAVDHFQEISAQYPEFWVFSLLGMAFIEYNTIMTAFETPSAVTGEGGLKEDYVPGDLGFDPLNLKPEDEAALDVMKTKELNNGRLAMIGIAGMLVQELINPADILG 220
[Close]
BLAST of mRNA_P-lacustris_contig947.15852.1 vs. uniprot
Match: D7G7Q9_ECTSI (Light harvesting complex protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7Q9_ECTSI)

HSP 1 Score: 343 bits (881), Expect = 1.120e-111
Identity = 183/219 (83.56%), Postives = 197/219 (89.95%), Query Frame = 2 
Query:  170 MVASQMFLGTAATLIASSTAFVAPMAAVRSVAPASSSS-LKMSAGSDYVATLPGA-LPDGKIFDPLGLSDGAAPGEIKKWREAEIKHGRVAMLASLGVLVAEQYHPFFMGPDYIGPAVDHFQEISAQYPEFWAFSLLGMAFIEYNTIVTAFASPSFVTGEGGLKEDYSPGDLGFDPLRIKPKTEKALDTMKTKELNNGRLAMIGIAGMLVQELVKPENI 820
            MVASQMFLGTAA LIASSTAFVAP+A VRS APAS++S LKMSAGSDYVATLPGA   DGKIFDPL LSDGAAPG+IKKWREAEIKHGRVAMLASLG+LVAE+YHP FMG D+IGPA+ HFQEISAQ+PEFWAFSLLGMAFIEYNTI+TAF +PS VTGEGGLKEDY PGDLGFDPL +KP  E ALD MKTKELNNGRLAMIGIAGML QELV  ++I
Sbjct:    1 MVASQMFLGTAAALIASSTAFVAPVA-VRSAAPASAASALKMSAGSDYVATLPGAPFSDGKIFDPLSLSDGAAPGDIKKWREAEIKHGRVAMLASLGILVAEEYHPLFMGKDFIGPAIIHFQEISAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYIPGDLGFDPLNLKPDGEAALDVMKTKELNNGRLAMIGIAGMLAQELVNGQDI 218
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BLAST of mRNA_P-lacustris_contig947.15852.1 vs. uniprot
Match: D7G7S1_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7S1_ECTSI)

HSP 1 Score: 343 bits (880), Expect = 1.420e-111
Identity = 181/221 (81.90%), Postives = 197/221 (89.14%), Query Frame = 2 
Query:  170 MVASQMFLGTAATLIASSTAFVAPMAAVRSVAPASSSS-LKMSAGSDYVATLPGA-LPDGKIFDPLGLSDGAAPGEIKKWREAEIKHGRVAMLASLGVLVAEQYHPFFMGPDYIGPAVDHFQEISAQYPEFWAFSLLGMAFIEYNTIVTAFASPSFVTGEGGLKEDYSPGDLGFDPLRIKPKTEKALDTMKTKELNNGRLAMIGIAGMLVQELVKPENIFG 826
            + +S MFLGTAATLIASSTAFVAPMA VRS APASS+S LKMSAGSDYVATLPGA   DGKIFDPL LSDGA PGEIK WREAEIKHGRVAMLA++GV+VAEQYHP FMGPDYIGPAVDHFQEISAQ+PEFWAFSLLGMAFIEYNTI  A+A PS VTGEGGL+++YSPGDLGFDPL +KPK +  L+ M+TKELNNGRLAMIGIAGMLVQELV P +I G
Sbjct:    2 VASSNMFLGTAATLIASSTAFVAPMA-VRSAAPASSASALKMSAGSDYVATLPGAPFGDGKIFDPLELSDGAEPGEIKLWREAEIKHGRVAMLATVGVIVAEQYHPLFMGPDYIGPAVDHFQEISAQFPEFWAFSLLGMAFIEYNTITKAYAEPSPVTGEGGLRDEYSPGDLGFDPLNLKPKDQAGLEKMQTKELNNGRLAMIGIAGMLVQELVNPADILG 221
[Close]
BLAST of mRNA_P-lacustris_contig947.15852.1 vs. uniprot
Match: D7G7S0_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7S0_ECTSI)

HSP 1 Score: 320 bits (821), Expect = 8.890e-103
Identity = 168/217 (77.42%), Postives = 191/217 (88.02%), Query Frame = 2 
Query:  179 SQMFLGTAATLIASSTAFVAPMAAVRSVAPASSSS-LKMSAGSDYVATLPGALPDGKIFDPLGLSDGAAPGEIKKWREAEIKHGRVAMLASLGVLVAEQYHPFFMGPDYIGPAVDHFQEISAQYPEFWAFSLLGMAFIEYNTIVTAFASPSFVTGEGGLKEDYSPGDLGFDPLRIKPKTEKALDTMKTKELNNGRLAMIGIAGMLVQELVKPENIFG 826
            S MFLGTAATLIASS AFV PMA VRS APASS+S LKMSAG+DY+ATLPGA  +GKIFD L L+DGA PGEIK WREAEIKHGRVAMLA++GV+VAEQYHPFFMGPDYIGPAVDHFQEI+A++P+FWA+SLLGMAFIEYNTI  A+A PS VTGEGGL+++YSPGDLGFDP +IKPK +  L+ M+ KELNNGRLAMIGI GMLVQELV  ++I G
Sbjct:    5 SNMFLGTAATLIASSAAFVTPMA-VRSAAPASSASALKMSAGTDYLATLPGA--NGKIFDLLELADGADPGEIKLWREAEIKHGRVAMLATVGVVVAEQYHPFFMGPDYIGPAVDHFQEITAKFPQFWAYSLLGMAFIEYNTIKKAYAEPSPVTGEGGLRDEYSPGDLGFDPAKIKPKDQAGLEKMQNKELNNGRLAMIGIVGMLVQELVNGQDILG 218
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BLAST of mRNA_P-lacustris_contig947.15852.1 vs. uniprot
Match: D7G7S5_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7S5_ECTSI)

HSP 1 Score: 293 bits (749), Expect = 2.370e-92
Identity = 140/161 (86.96%), Postives = 149/161 (92.55%), Query Frame = 2 
Query:  344 KIFDPLGLSDGAAPGEIKKWREAEIKHGRVAMLASLGVLVAEQYHPFFMGPDYIGPAVDHFQEISAQYPEFWAFSLLGMAFIEYNTIVTAFASPSFVTGEGGLKEDYSPGDLGFDPLRIKPKTEKALDTMKTKELNNGRLAMIGIAGMLVQELVKPENIFG 826
            +IFDPLGLSDGAAPG+IKKWREAEIKHGRVAMLASLGV+VAEQYHPFFMGPDYIGPAVDHFQEISAQ+PEFWAFSLLGMAF+EYNTI+TAF +PS VTGEGGLKEDY PGDLGFDPL +KP  E ALD MKTKELNNGRLAMIGIAGML QELV P +I G
Sbjct:   36 QIFDPLGLSDGAAPGDIKKWREAEIKHGRVAMLASLGVIVAEQYHPFFMGPDYIGPAVDHFQEISAQFPEFWAFSLLGMAFVEYNTIMTAFDTPSAVTGEGGLKEDYIPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADILG 196
[Close]
BLAST of mRNA_P-lacustris_contig947.15852.1 vs. uniprot
Match: A0A6H5JWB4_9PHAE (LHCP protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWB4_9PHAE)

HSP 1 Score: 293 bits (751), Expect = 7.600e-90
Identity = 141/161 (87.58%), Postives = 149/161 (92.55%), Query Frame = 2 
Query:  344 KIFDPLGLSDGAAPGEIKKWREAEIKHGRVAMLASLGVLVAEQYHPFFMGPDYIGPAVDHFQEISAQYPEFWAFSLLGMAFIEYNTIVTAFASPSFVTGEGGLKEDYSPGDLGFDPLRIKPKTEKALDTMKTKELNNGRLAMIGIAGMLVQELVKPENIFG 826
            +IFDPLGLSDGAAPG+IKKWREAEIKHGRVAMLASLGV+VAEQYHPFFMGPDYIGPAVDHFQEISAQ+PEFWAFSLLGMAFIEYNTI+TAF +PS VTGEGGLKEDY PGDLGFDPL +KP  E ALD MKTKELNNGRLAMIGIAGML QELV P +I G
Sbjct:  232 QIFDPLGLSDGAAPGDIKKWREAEIKHGRVAMLASLGVIVAEQYHPFFMGPDYIGPAVDHFQEISAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYMPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADILG 392
[Close]
BLAST of mRNA_P-lacustris_contig947.15852.1 vs. uniprot
Match: A0A6H5K8D0_9PHAE (LHCP protein n=7 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K8D0_9PHAE)

HSP 1 Score: 286 bits (731), Expect = 9.960e-90
Identity = 164/221 (74.21%), Postives = 171/221 (77.38%), Query Frame = 2 
Query:  170 MVASQMFLGTAATLIASSTAFVAPMAAVRSVAPASSS-SLKMSAGSDYVATLPGA-LPDGKIFDPLGLSDGAAPGEIKKWREAEIKHGRVAMLASLGVLVAEQYHPFFMGPDYIGPAVDHFQEISAQYPEFWAFSLLGMAFIEYNTIVTAFASPSFVTGEGGLKEDYSPGDLGFDPLRIKPKTEKALDTMKTKELNNGRLAMIGIAGMLVQELVKPENIFG 826
            MVASQMF+GTAATLIASSTAFVAPMA VRSV    SS  LKMSAGSDYVATLPGA   DGKIFDPLGLSDGAAPG+IKKWREAEIKHGRVAMLASLGV+VAE                            FWAFSLLGMAFIEYNTI+TAF +PS VTGEGGLKEDY PGDLGFDPL +KP  E ALD MKTKELNNGRLAMIGIAGML QELV P +I G
Sbjct:    1 MVASQMFIGTAATLIASSTAFVAPMA-VRSVTTTPSSPGLKMSAGSDYVATLPGAPFSDGKIFDPLGLSDGAAPGDIKKWREAEIKHGRVAMLASLGVIVAE----------------------------FWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYMPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADILG 192
[Close]
BLAST of mRNA_P-lacustris_contig947.15852.1 vs. uniprot
Match: D7G7Q7_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7Q7_ECTSI)

HSP 1 Score: 273 bits (699), Expect = 3.560e-85
Identity = 130/159 (81.76%), Postives = 144/159 (90.57%), Query Frame = 2 
Query:  344 KIFDPLGLSDGAAPGEIKKWREAEIKHGRVAMLASLGVLVAEQYHPFFMGPDYIGPAVDHFQEISAQYPEFWAFSLLGMAFIEYNTIVTAFASPSFVTGEGGLKEDYSPGDLGFDPLRIKPKTEKALDTMKTKELNNGRLAMIGIAGMLVQELVKPENI 820
            KIFDPLGL+DGA  G+IK WREAEIKHGRVAMLASLGVLVAE+YHPFFMGPDYIGPAVDHFQEISA++PEFWAFSLL +A IEYNTI  A+A PSFVTGEGGL+++YSPGDLGFDPL +KP  + AL+TM+TKELNNGRLAMIGIAG LVQELV P NI
Sbjct:   15 KIFDPLGLADGAEVGDIKLWREAEIKHGRVAMLASLGVLVAEEYHPFFMGPDYIGPAVDHFQEISARFPEFWAFSLLALALIEYNTITKAYAEPSFVTGEGGLRDEYSPGDLGFDPLNLKPTDQTALETMQTKELNNGRLAMIGIAGTLVQELVNPTNI 173
[Close]
BLAST of mRNA_P-lacustris_contig947.15852.1 vs. uniprot
Match: D7G5B4_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5B4_ECTSI)

HSP 1 Score: 257 bits (656), Expect = 1.890e-77
Identity = 132/213 (61.97%), Postives = 165/213 (77.46%), Query Frame = 2 
Query:  191 LGTAATLIASSTAFVAPMAAVRSVAPASSSSLKMSAGSDYVATLPGA-LPDGKIFDPLGLSDGAAPGEIKKWREAEIKHGRVAMLASLGVLVAEQYHPFFMGPDYIGPAVDHFQEISAQYPEFWAFSLLGMAFIEYNTIVTAFASPSFVTGEGGLKEDYSPGDLGFDPLRIKPKTEKALDTMKTKELNNGRLAMIGIAGMLVQELVKPENIFG 826
            +G A+   AS  AF+ P     S  P S+++ +MSAGSDYV+TLPGA   DGK++DP+GLS  A P +IKKWREAEIKHGRVAMLAS+GVLVAE +HP F+GPDYIGPA+ HF+EI+A++P+FWA +LL +A++EY  I   FA    VTGEGG++ DY PGDLGFDPL + P+ E  L+ MKTKELN+GRLAMIGI GM+VQELV+P  IFG
Sbjct:   60 VGMASWCFASCEAFIVPTPTTLSARPTSTAA-RMSAGSDYVSTLPGAPFADGKVWDPVGLSSEADPEDIKKWREAEIKHGRVAMLASVGVLVAENFHPLFLGPDYIGPAIFHFEEITARFPQFWALTLLAIAWLEYRQINIGFAELDPVTGEGGMRLDYVPGDLGFDPLGLAPEDEHELNVMKTKELNHGRLAMIGITGMIVQELVRPLPIFG 271
[Close]
BLAST of mRNA_P-lacustris_contig947.15852.1 vs. uniprot
Match: D7FQG7_ECTSI (Light harvesting complex protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQG7_ECTSI)

HSP 1 Score: 233 bits (594), Expect = 6.970e-69
Identity = 130/223 (58.30%), Postives = 163/223 (73.09%), Query Frame = 2 
Query:  170 MVASQMFLGTAATLIASSTAFVAPMAAVRS--VAPASSSSLKMSAGSDYVATLPGA----LPDGKIFDPLGLSDGAAPGEIKKWREAEIKHGRVAMLASLGVLVAEQYHPFFMGPDYIGPAVDHFQEISAQYPEFWAFSLLGMAFIEYNTIVTAFASPSFVTGEGGLKEDYSPGDLGFDPLRIKPKTEKALDTMKTKELNNGRLAMIGIAGMLVQELVKPENI 820
            MV SQ+FLGTAATLIASS AFVAP+AA RS     A+SS+ KM+AGSDY A+LPGA      +GK FDP GL+    P  IKKWREAE+KHGRV+MLA++G+LV+E +HP FMGP YIGPAV+H Q+I+  YP FW  SL  +AFIE  TI  A+ + S VTG G LK +Y PGDLGFDPL + PK  +    ++++EL+ GR AMIG+ GM+VQE+V  + I
Sbjct:    1 MVTSQLFLGTAATLIASSAAFVAPIAAPRSSIARVAASSTPKMTAGSDYAASLPGAPFGMAAEGKYFDPAGLATNQDPETIKKWREAELKHGRVSMLAAVGILVSEVFHPLFMGPAYIGPAVEHAQQIATVYPLFWVASLGMIAFIEGQTIKDAWGTVSPVTGVGNLKTEYYPGDLGFDPLGLAPKDGEDFRLIQSQELDLGRYAMIGVLGMIVQEVVDGKGI 223
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig947.15852.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G7Q6_ECTSI1.910e-11785.97Light harvesting complex protein n=2 Tax=Ectocarpu... [more]
D7G7Q9_ECTSI1.120e-11183.56Light harvesting complex protein n=2 Tax=Ectocarpu... [more]
D7G7S1_ECTSI1.420e-11181.90Light harvesting complex protein n=1 Tax=Ectocarpu... [more]
D7G7S0_ECTSI8.890e-10377.42Light harvesting complex protein n=1 Tax=Ectocarpu... [more]
D7G7S5_ECTSI2.370e-9286.96Light harvesting complex protein n=1 Tax=Ectocarpu... [more]
A0A6H5JWB4_9PHAE7.600e-9087.58LHCP protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
A0A6H5K8D0_9PHAE9.960e-9074.21LHCP protein n=7 Tax=Ectocarpus TaxID=2879 RepID=A... [more]
D7G7Q7_ECTSI3.560e-8581.76Light harvesting complex protein n=1 Tax=Ectocarpu... [more]
D7G5B4_ECTSI1.890e-7761.97Light harvesting complex protein n=1 Tax=Ectocarpu... [more]
D7FQG7_ECTSI6.970e-6958.30Light harvesting complex protein n=2 Tax=Ectocarpu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig947contigP-lacustris_contig947:54858..58124 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score372.1
Seed ortholog evalue1.8e-100
Seed eggNOG ortholog2880.D7G7S3
KEGG koko:K08914
KEGG Pathwayko00196,ko01100,map00196,map01100
Hectar predicted targeting categorychloroplast
EggNOG free text desc.Chlorophyll A-B binding protein
EggNOG OGs2BEWM@1,2S15M@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00194
Exons4
Model size1944
Cds size660
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig947.15852.1prot_P-lacustris_contig947.15852.1Pleurocladia lacustris SAG_25_93polypeptideP-lacustris_contig947 55027..57009 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817375.692634-UTR-P-lacustris_contig947:54857..550261622817375.692634-UTR-P-lacustris_contig947:54857..55026Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig947 54858..55026 +
1693495018.0412083-UTR-P-lacustris_contig947:54857..550261693495018.0412083-UTR-P-lacustris_contig947:54857..55026Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig947 54858..55026 +
1622817375.7442932-UTR-P-lacustris_contig947:57009..581241622817375.7442932-UTR-P-lacustris_contig947:57009..58124Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig947 57010..58124 +
1693495018.1086957-UTR-P-lacustris_contig947:57009..581241693495018.1086957-UTR-P-lacustris_contig947:57009..58124Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig947 57010..58124 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817375.7033622-CDS-P-lacustris_contig947:55026..552031622817375.7033622-CDS-P-lacustris_contig947:55026..55203Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig947 55027..55203 +
1693495018.0638018-CDS-P-lacustris_contig947:55026..552031693495018.0638018-CDS-P-lacustris_contig947:55026..55203Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig947 55027..55203 +
1622817375.7143292-CDS-P-lacustris_contig947:55748..558711622817375.7143292-CDS-P-lacustris_contig947:55748..55871Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig947 55749..55871 +
1693495018.0774612-CDS-P-lacustris_contig947:55748..558711693495018.0774612-CDS-P-lacustris_contig947:55748..55871Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig947 55749..55871 +
1622817375.7245195-CDS-P-lacustris_contig947:56048..561321622817375.7245195-CDS-P-lacustris_contig947:56048..56132Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig947 56049..56132 +
1693495018.0877166-CDS-P-lacustris_contig947:56048..561321693495018.0877166-CDS-P-lacustris_contig947:56048..56132Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig947 56049..56132 +
1622817375.7345266-CDS-P-lacustris_contig947:56733..570091622817375.7345266-CDS-P-lacustris_contig947:56733..57009Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig947 56734..57009 +
1693495018.0981398-CDS-P-lacustris_contig947:56733..570091693495018.0981398-CDS-P-lacustris_contig947:56733..57009Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig947 56734..57009 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-lacustris_contig947.15852.1

>prot_P-lacustris_contig947.15852.1 ID=prot_P-lacustris_contig947.15852.1|Name=mRNA_P-lacustris_contig947.15852.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=220bp
MVASQMFLGTAATLIASSTAFVAPMAAVRSVAPASSSSLKMSAGSDYVAT
LPGALPDGKIFDPLGLSDGAAPGEIKKWREAEIKHGRVAMLASLGVLVAE
QYHPFFMGPDYIGPAVDHFQEISAQYPEFWAFSLLGMAFIEYNTIVTAFA
SPSFVTGEGGLKEDYSPGDLGFDPLRIKPKTEKALDTMKTKELNNGRLAM
IGIAGMLVQELVKPENIFG*
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mRNA from alignment at P-lacustris_contig947:54858..58124+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-lacustris_contig947.15852.1 ID=mRNA_P-lacustris_contig947.15852.1|Name=mRNA_P-lacustris_contig947.15852.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=3267bp|location=Sequence derived from alignment at P-lacustris_contig947:54858..58124+ (Pleurocladia lacustris SAG_25_93)
AATTTCGTCAGCGGCGCGTCACCAATGTTCTGGCTCAGGCAGAAATCTCG
CCGCATCGGCAACTCACGCCACCTCTCTTCTCCCCACTCACCTCACAACG
CAACCTCGCCCTCTTCTTCATCAAGCGTTCCCTATCATCCCCTCTTTCTC
ACACACACCCTCAGCCAAGATGGTCGCCTCCCAAATGTTCCTCGGCACTG
CGGCCACCCTCATCGCCTCCTCGACTGCCTTCGTCGCACCAATGGCTGCT
GTGCGATCCGTCGCTCCCGCTTCCTCGTCGAGCCTCAAGATGAGCGCTGG
ATCCGACTACGTGGCAACCCTGCCCGGTGCTCTCCCAGACGGCAAAGTAA
GTGATGAATGCACAAGATACAGCTGtTTGGTGTGGTGTGTAGATGCCTCT
GGGTTTCGTTGCCGGGACTCGAGGCGAAACATGTTTGTTCCTTCGAGCGA
CAGAAAAGCTCCGCCCCTCGTGCAGTCCCAACATGTGTGCCATCTGTGCT
GACATTGACGACAAGGATGACGTGTTTGTCATTTACTCCACTTGCACGTA
TCGTGTTTGTCATGTACTCATCATGCTCGTGTTTTCTTCACGTGTACAAC
GGTGCTCGTACGCCTGGTATTCCCTCGCTGGAAGCGCACAGACGTGTTGG
CTATCAACCACAGCCGCAGACCGTTATGTGGGCAAATAGATCATATCTGC
TTTCCATATCGCGATATCCGTGTCAAGCGTCGCGTGATGGCACAACATAG
AGGGGCGCCGGCTGAATGGTTGACCCACTACGCTCTGCACACGGGAGATG
TGGAGTGCCGCTGTGCATCCCATTTATGCACACAATTATTTTCCCTAACT
CGTGACGTGCTTCTGCTCTGTGAACGTCTCCATGCCGGCAGATTTTCGAC
CCCCTCGGCCTGTCGGACGGCGCTGCCCCTGGCGAAATCAAGAAGTGGCG
CGAGGCAGAGATCAAGCACGGACGTGTGGCCATGCTTGCGTCGCTCGGTG
TACTCGTTGCAGAGGTAAGATGCACACCCATCTCGTGCAGTCGTATCGTA
GGCGGATAGCAACGAGTGTTGCTGTTGGTTTCTTGTGGAACGAATAGACG
AATTGTCCATTCTACTACAAAACCCAAACGTTTTTCGCACCGCCTTTGCC
ACCGCGGTCCCTCCCGTCAATCGTTGTGCCTCACTCAACAGCAATACCAC
CCTTTCTTCATGGGTCCCGACTATATCGGTCCGGCCGTGGACCACTTCCA
GGAGATCTCGGCGCAGTACCCCGAGGTAAGTAGATGTGTTGATCGTGGGC
TGGGAGGATAACCTTTGGTATCGGGTATAAGCATCGTTGGTAGATACAGC
AGTAGTAGCAGAGATATGGCCTGTTGGGGAAAACCCCTTTTGATTTGAAT
GTGTATATATCTGCTGGACATGGTTTCCCGAAACAAAATACACGCTTGTA
CAATATATCACGTACCACATGATACTCTCGGCATCTGAAAAAGCTTCGTG
CGTTATTCACCAAAAACTAAGCTAAATCGCCTCACAGGATACCGGGAATG
TCGAACGGACGCTGTGTTATATCACACGACAGACCACACTCGTGTAAATA
ATTTGGCGCGTGACAATGGCCCGATTCCCCACCGTTCCAATACCTGCCGC
TTGGTGCGAAAGAGTAGACCGTCTAGTTCTCCGATGTGTTCAATGGCGTA
CGCACACCCGCACGTCTACTAGAGAGTCGTTTGACTTCACCATGATGGGT
GGTGACAACTGTCTATGCTGTCACATTATTTCCTCCGTGGTTTGCATGGA
CTTGTCGGTGTTTCGACACGTGAACCCTTTGCTcCCCCCGTTTTGCTTTT
CATACACTTATGTCGAAAAACCACAGTTCTGGGCGTTCTCCCTGCTCGGC
ATGGCGTTCATCGAGTACAACACCATCGTGACCGCGTTCGCCTCTCCCAG
CTTCGTGACTGGCGAGGGCGGGCTCAAGGAGGACTACAGCCCGGGAGACC
TCGGCTTCGACCCCCTCCGAATCAAGCCAAAGACCGAGAAGGCCCTGGAC
ACAATGAAGACCAAGGAACTCAACAACGGTCGCCTGGCCATGATCGGCAT
CGCAGGCATGCTCGTGCAAGAACTGGTGAAGCCGGAAAACATCTTCGGCT
AACCAAAAGATACGGTCGACTTGCTGGTGTTGTCTTTTTAAATGGCGTGC
TGTATTATTTTGTGTGTTCTTGGTTGGATGCTTTCTTGTCAAAACGGCGG
TATGTGCGAAGTGTGGCGGTGTCCCTTCAAGAAGGGATGGTGGCGTTATC
GTGTTCAGGATGCGTGCGTTGATTATGCCCGTCCTTATGTGTGCTGGTTA
GTGATTTTTTGTTTCTGTCGTAGAGTGCATCGATGATCGAACAAGGTCTC
GTTTGCTGTACAGTGTTTTCATCCTTGCGTGATCTGCGATGTAAAATTGA
CTCTTGTATTGATCTTACCCTGGATGGCGGCGGGAGATTTTGAGTAATGT
TCTTTGCACGGTACCAGTTCCGGTCGAACAAGTTTCGAATGTTTTATCGC
GCGTGGTGTTCGCCAGACCTTCGTCGTCTCTAAAAGAGAAACATGGCAAG
CGTGCCAGCAGCCGCACGCACGGTTCCACTTAAAGGCCGTATCTAGAGGA
TGAGAGTCTGACGTCGGCATCCAAGGTATGTGGAACCATGTTGTGCAGGG
CTGCCGCATCAAGGAGACCTGGCAAAGGCCATCATATGGCGTGGATGTTC
ACTTTTAACGTTGTCGATGTCGGGGGGCAAAGAGATTCGTGGCGCACCTC
CTGGGGACGCGTGTGCGGTGTGTGTGCGTTGGTCTTTTGATTTTGTTGGA
TCGGTGACTGTTCGTTGGTAAAAATTTGATTTATTTGTATCTGTGAAAGT
AGTTCGTCTAAAAAAGGTGACCGGTGGTTAGACATGCAGAATGCAGATGC
AGACGGTGTGTGTACCCTCGTTGACGGCAGTCCAATCAAAATATACAAAA
CATGCGTTCGTTGATGTGGCCTTTACTTGGGGAGCGATGATGATTTCCCC
CAGGGCAACGGTCAGTCTTGACCTCCGACATTCCTGTGCTGTATGTTCGA
GGAAGGGTGCAATATTCACGCACGCACTCGCGCGGCCTCGCCGGGTCGAC
ATCTTGCCGCAATGACATATGGTCAAGGTGTGGGTGGGTGCCTAGCACAC
GAGTTGCACACATTAGGGTGGGGCGTAACCTCCGAAAAAATAATCGCAAC
ACGGAACCTGGCACGTG
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Coding sequence (CDS) from alignment at P-lacustris_contig947:54858..58124+

>mRNA_P-lacustris_contig947.15852.1 ID=mRNA_P-lacustris_contig947.15852.1|Name=mRNA_P-lacustris_contig947.15852.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=1320bp|location=Sequence derived from alignment at P-lacustris_contig947:54858..58124+ (Pleurocladia lacustris SAG_25_93)
ATGGTCGCCTCCCAAATGTTCCTCGGCACTGCGGCCACCCTCATCGCCTC
CTCGACTGCCTTCGTCGCACCAATGGCTGCTGTGCGATCCGTCGCTCCCG
CTTCCTCGTCGAGCCTCAAGATGAGCGCTGGATCCGACTACGTGGCAACC
CTGCCCGGTGCTCTCCCAGACGGCAAAATGGTCGCCTCCCAAATGTTCCT
CGGCACTGCGGCCACCCTCATCGCCTCCTCGACTGCCTTCGTCGCACCAA
TGGCTGCTGTGCGATCCGTCGCTCCCGCTTCCTCGTCGAGCCTCAAGATG
AGCGCTGGATCCGACTACGTGGCAACCCTGCCCGGTGCTCTCCCAGACGG
CAAAATTTTCGACCCCCTCGGCCTGTCGGACGGCGCTGCCCCTGGCGAAA
TCAAGAAGTGGCGCGAGGCAGAGATCAAGCACGGACGTGTGGCCATGCTT
GCGTCGCTCGGTGTACTCGTTGCAGAGATTTTCGACCCCCTCGGCCTGTC
GGACGGCGCTGCCCCTGGCGAAATCAAGAAGTGGCGCGAGGCAGAGATCA
AGCACGGACGTGTGGCCATGCTTGCGTCGCTCGGTGTACTCGTTGCAGAG
CAATACCACCCTTTCTTCATGGGTCCCGACTATATCGGTCCGGCCGTGGA
CCACTTCCAGGAGATCTCGGCGCAGTACCCCGAGCAATACCACCCTTTCT
TCATGGGTCCCGACTATATCGGTCCGGCCGTGGACCACTTCCAGGAGATC
TCGGCGCAGTACCCCGAGTTCTGGGCGTTCTCCCTGCTCGGCATGGCGTT
CATCGAGTACAACACCATCGTGACCGCGTTCGCCTCTCCCAGCTTCGTGA
CTGGCGAGGGCGGGCTCAAGGAGGACTACAGCCCGGGAGACCTCGGCTTC
GACCCCCTCCGAATCAAGCCAAAGACCGAGAAGGCCCTGGACACAATGAA
GACCAAGGAACTCAACAACGGTCGCCTGGCCATGATCGGCATCGCAGGCA
TGCTCGTGCAAGAACTGGTGAAGCCGGAAAACATCTTCGGCTAATTCTGG
GCGTTCTCCCTGCTCGGCATGGCGTTCATCGAGTACAACACCATCGTGAC
CGCGTTCGCCTCTCCCAGCTTCGTGACTGGCGAGGGCGGGCTCAAGGAGG
ACTACAGCCCGGGAGACCTCGGCTTCGACCCCCTCCGAATCAAGCCAAAG
ACCGAGAAGGCCCTGGACACAATGAAGACCAAGGAACTCAACAACGGTCG
CCTGGCCATGATCGGCATCGCAGGCATGCTCGTGCAAGAACTGGTGAAGC
CGGAAAACATCTTCGGCTAA
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