prot_P-lacustris_contig928.15702.1 (polypeptide) Pleurocladia lacustris SAG_25_93

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_P-lacustris_contig928.15702.1
Unique Name	prot_P-lacustris_contig928.15702.1
Type	polypeptide
Organism	Pleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Sequence length	213

Homology

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BLAST of mRNA_P-lacustris_contig928.15702.1 vs. uniprot
Match: D7G1Y9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G1Y9_ECTSI)

HSP 1 Score: 412 bits (1060), Expect = 1.470e-145
Identity = 207/212 (97.64%), Postives = 211/212 (99.53%), Query Frame = 0

Query:    1 MEGSGPRLSDEGHKVYRVRQTCMKMLEKRGYNVLQEHVSMTSEAFLNQYGPEPNRHDLTLLVEKVDDPMDQIFVFFPDDEKVGVKPIRSYSEKMLEEEVKRAIIVIKGGITPFARSAIQELCAQREVQVEDFKDAELMLDITEHTLVPEHQVLTSEQKAELLKRYKLKDTQLPRIQSTDPVARFYGMQKGQVCKITRPSETAGRYVTYRLCI 212
            MEGSGPRLSDEGHK+YR+RQTCMKMLEKRGYNVLQEHVSMTSEAFL QYGPEPNRHDLTLLVEKVDDPMDQIFVFFPDDEKVGVKPIRSYSEKMLEEEVKRAIIVIKGGITPFARSAIQELCAQREVQVEDFKDAELMLDITEHTLVPEHQVL+SEQKAELLKRYKLKDTQLPRIQSTDPVARF+GMQKGQVCKITRPSETAGRYVTYRLCI
Sbjct:    1 MEGSGPRLSDEGHKIYRIRQTCMKMLEKRGYNVLQEHVSMTSEAFLQQYGPEPNRHDLTLLVEKVDDPMDQIFVFFPDDEKVGVKPIRSYSEKMLEEEVKRAIIVIKGGITPFARSAIQELCAQREVQVEDFKDAELMLDITEHTLVPEHQVLSSEQKAELLKRYKLKDTQLPRIQSTDPVARFFGMQKGQVCKITRPSETAGRYVTYRLCI 212

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BLAST of mRNA_P-lacustris_contig928.15702.1 vs. uniprot
Match: A0A835YLJ3_9STRA (RNA polymerase Rpb5, C-terminal domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLJ3_9STRA)

HSP 1 Score: 287 bits (735), Expect = 4.940e-96
Identity = 139/210 (66.19%), Postives = 176/210 (83.81%), Query Frame = 0

Query:    7 RLSDEGHKVYRVRQTCMKMLEKRGYNVLQEHVS----MTSEAFLNQYGPEPNRHDLTLLVEKVDDPMDQIFVFFPDDEKVGVKPIRSYSEKMLEEEVKRAIIVIKGGITPFARSAIQELCAQREVQVEDFKDAELMLDITEHTLVPEHQVLTSEQKAELLKRYKLKDTQLPRIQSTDPVARFYGMQKGQVCKITRPSETAGRYVTYRLCI 212
            +LS EG K++R+R+TC+KML KRGYNV  EH+S      ++ F+ Q+G  P+R  +T+LVEKVDDP D+IFVFFPD+EKVGVK IR+Y ++M +E V+++IIV++GG+TP +R A  +LC QR VQ+EDFKDAELM+DIT+H LVPEHQVL +E+KAELLKRYKL DTQLPRI STDPVAR+YG+Q+GQV KI RPSETAGRYVTYRLC+
Sbjct:    4 QLSLEGSKLFRIRKTCLKMLSKRGYNVADEHISGSNASATQRFIEQFGDNPSREQMTILVEKVDDPSDRIFVFFPDEEKVGVKTIRTYGDRMKDENVRKSIIVVRGGMTPLSRDANAQLCQQRGVQIEDFKDAELMVDITDHVLVPEHQVLNNEEKAELLKRYKLTDTQLPRIHSTDPVARYYGLQRGQVVKIIRPSETAGRYVTYRLCM 213

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BLAST of mRNA_P-lacustris_contig928.15702.1 vs. uniprot
Match: W4GMP1_9STRA (Uncharacterized protein n=3 Tax=Aphanomyces TaxID=100860 RepID=W4GMP1_9STRA)

HSP 1 Score: 243 bits (620), Expect = 1.160e-78
Identity = 118/202 (58.42%), Postives = 158/202 (78.22%), Query Frame = 0

Query:    8 LSDEGHKVYRVRQTCMKMLEKRGYNVLQEHVSMTSEAFLNQYGPEPNRHDLTLLVEKVDDPMDQIFVFFPDDEKVGVKPIRSYSEKMLEEEVKRAIIVIKGGITPFARSAIQELCAQREVQVEDFKDAELMLDITEHTLVPEHQVLTSEQKAELLKRYKLKDTQLPRIQSTDPVARFYGMQKGQVCKITRPSETAGRYVTYR 209
            L+ E  K++RVR+T +KML  RGY V +E +  T E F+ Q+G  P R  +T+LVEKVDDP D +FVF+P+D KVGVKPIR+Y  +M +E V +AI++++ GITPFA+ A+ E+  +   +++ FK+ EL++DITEHTLVP H+VLT E+K  LLKRYKLKDTQLPR+Q++DP+AR+YGM +GQV KI RPSETAGRYVTYR
Sbjct:    3 LNPEASKLFRVRKTVVKMLHNRGYIVSEEELHRTPEGFIGQFGENPTRDTMTILVEKVDDPSDNLFVFYPEDAKVGVKPIRNYCNRMKDENVTKAILIVQDGITPFAKQALNEMAPR--YKIDHFKENELLVDITEHTLVPVHKVLTKEEKLALLKRYKLKDTQLPRMQASDPIARYYGMSRGQVVKIIRPSETAGRYVTYR 202

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BLAST of mRNA_P-lacustris_contig928.15702.1 vs. uniprot
Match: A0A482UUV9_9ARCH (DNA-directed RNA polymerase subunit Rpo5 n=1 Tax=archaeon TaxID=1906665 RepID=A0A482UUV9_9ARCH)

HSP 1 Score: 241 bits (614), Expect = 1.150e-77
Identity = 121/205 (59.02%), Postives = 162/205 (79.02%), Query Frame = 0

Query:    8 LSDEGHKVYRVRQTCMKMLEKRGYNVLQEHVSMTSEAFLNQYGPEPNRHDLTLLVEKVDDPMDQIFVFFPDDEKVGVKPIRSYSEKMLEEEVKRAIIVIKGGITPFARSAIQELCAQREVQVEDFKDAELMLDITEHTLVPEHQVLTSEQKAELLKRYKLKDTQLPRIQSTDPVARFYGMQKGQVCKITRPSETAGRYVTYRLCI 212
            L+ E  K++RVR+TC+KML KRGY V +  + M+++ F +++G  P+R  LT+L EK DDP DQIFVFFP+DEKVGV PI+ Y ++M    V RAIIV+K  +TPFAR+A++E+ + R  +VE F+DAEL++DITEH LVPEH VLT +QK ELL+RY+LK +QLPRIQ  DP+AR+ G+++GQV KI RPSETAGRYVTYR+C+
Sbjct:    8 LNPEASKMFRVRKTCLKMLSKRGYVVDENALQMSTDQFRDKFGETPSRDSLTILAEKSDDPTDQIFVFFPEDEKVGVNPIKIYCQRMKTANVYRAIIVVKINLTPFARTAVKEM-SLRGYRVEYFRDAELLVDITEHKLVPEHIVLTDQQKLELLERYRLKVSQLPRIQIADPIARYMGLRQGQVVKIVRPSETAGRYVTYRICV 211

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BLAST of mRNA_P-lacustris_contig928.15702.1 vs. uniprot
Match: K3WP89_GLOUD (Uncharacterized protein n=27 Tax=Oomycota TaxID=4762 RepID=K3WP89_GLOUD)

HSP 1 Score: 238 bits (608), Expect = 7.950e-77
Identity = 116/202 (57.43%), Postives = 158/202 (78.22%), Query Frame = 0

Query:    8 LSDEGHKVYRVRQTCMKMLEKRGYNVLQEHVSMTSEAFLNQYGPEPNRHDLTLLVEKVDDPMDQIFVFFPDDEKVGVKPIRSYSEKMLEEEVKRAIIVIKGGITPFARSAIQELCAQREVQVEDFKDAELMLDITEHTLVPEHQVLTSEQKAELLKRYKLKDTQLPRIQSTDPVARFYGMQKGQVCKITRPSETAGRYVTYR 209
            L+ E  ++YRVR+T +KML  RGY V +  + MT E+F +Q+G  P R  +T+LVEK+DDP D +FVFFP+D KVGVKPIR++  +M +E V +AI+V++ GITPFAR A+ E+  +   ++E FK+ EL++DITEHTLVP H+VL  ++KA LLKRY++KD+QLPR+Q TDP+AR+YG+ +GQV KI RPSETAGRYVTYR
Sbjct:    4 LTPEASRLYRVRKTTVKMLHNRGYIVSENELVMTPESFQHQFGDNPTREMMTILVEKIDDPSDNLFVFFPEDTKVGVKPIRTFCNRMKDENVSKAILVVQEGITPFARQALNEMAPR--YKIEHFKETELLVDITEHTLVPVHRVLNRDEKAALLKRYRIKDSQLPRMQVTDPIARYYGITRGQVVKIIRPSETAGRYVTYR 203

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BLAST of mRNA_P-lacustris_contig928.15702.1 vs. uniprot
Match: A0A6S9BLJ2_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6S9BLJ2_9STRA)

HSP 1 Score: 239 bits (609), Expect = 1.200e-76
Identity = 121/205 (59.02%), Postives = 159/205 (77.56%), Query Frame = 0

Query:    8 LSDEGHKVYRVRQTCMKMLEKRGYNVLQEHVSMTSEAFLNQYGPEPNRHDLTLLVEKVDDPMDQIFVFFPDDEKVGVKPIRSYSEKMLEEEVKRAIIVIKGGITPFARSAIQELCAQREVQVEDFKDAELMLDITEHTLVPEHQVLTSEQKAELLKRYKLKDTQLPRIQSTDPVARFYGMQKGQVCKITRPSETAGRYVTYRLCI 212
            L+ E  ++YRV +T   MLEKRGY V +E  +M+++AF  ++G +P R  LT+LVEK DD  +Q+FVFFP DEKVGVKPI+  ++KM EE V  AI+V++  IT FA+ A+QE+      ++E FK+AEL++DITEH LVPEHQVL+  +K ELLKRY+LK+TQLPRIQ  DPVAR+YGM++GQV KI RPSETAGRYVTYR+C+
Sbjct:   27 LTPEASRLYRVYKTVAAMLEKRGYMVPREIRTMSADAFTQKFGEKPTRQSLTILVEKADDESNQLFVFFPIDEKVGVKPIKELTDKMKEETVSNAILVLREDITAFAKQAVQEM--SDSFRIEHFKEAELLVDITEHNLVPEHQVLSKNEKEELLKRYRLKETQLPRIQPNDPVARYYGMKRGQVVKIIRPSETAGRYVTYRICM 229

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BLAST of mRNA_P-lacustris_contig928.15702.1 vs. uniprot
Match: A0A067CT03_SAPPC (Uncharacterized protein n=4 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067CT03_SAPPC)

HSP 1 Score: 238 bits (606), Expect = 1.710e-76
Identity = 116/202 (57.43%), Postives = 156/202 (77.23%), Query Frame = 0

Query:    8 LSDEGHKVYRVRQTCMKMLEKRGYNVLQEHVSMTSEAFLNQYGPEPNRHDLTLLVEKVDDPMDQIFVFFPDDEKVGVKPIRSYSEKMLEEEVKRAIIVIKGGITPFARSAIQELCAQREVQVEDFKDAELMLDITEHTLVPEHQVLTSEQKAELLKRYKLKDTQLPRIQSTDPVARFYGMQKGQVCKITRPSETAGRYVTYR 209
            L+ E  ++YRVR+T +KML  RGY V  + +  T++ F  Q+G  P R  +T+LVEKVDDP D +FVF+PDD KVGVKPIR+Y  +M +E V +AI++++ GITPFA+ A+ E+  +   +++ FK+ EL++DITEHTLVP H+VLT E+K  LLKRYKLKD+QLPR+Q +DP+AR+YGM +GQV KI RPSETAGRYVTYR
Sbjct:    6 LNPEASRLYRVRKTVVKMLANRGYIVSDDELKRTTDGFAAQFGENPTREMMTILVEKVDDPSDNLFVFYPDDAKVGVKPIRTYCNRMKDENVTKAILIVQDGITPFAKQALNEMAPR--YKIDHFKETELLVDITEHTLVPVHKVLTREEKIALLKRYKLKDSQLPRMQVSDPIARYYGMTRGQVVKIIRPSETAGRYVTYR 205

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BLAST of mRNA_P-lacustris_contig928.15702.1 vs. uniprot
Match: A0A7S2KP14_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2KP14_9STRA)

HSP 1 Score: 237 bits (604), Expect = 6.860e-76
Identity = 121/209 (57.89%), Postives = 160/209 (76.56%), Query Frame = 0

Query:    4 SGPRLSDEGHKVYRVRQTCMKMLEKRGYNVLQEHVSMTSEAFLNQYGPEPNRHDLTLLVEKVDDPMDQIFVFFPDDEKVGVKPIRSYSEKMLEEEVKRAIIVIKGGITPFARSAIQELCAQREVQVEDFKDAELMLDITEHTLVPEHQVLTSEQKAELLKRYKLKDTQLPRIQSTDPVARFYGMQKGQVCKITRPSETAGRYVTYRLCI 212
            SG  L+ E  +++RV +T   ML KRGY V ++   M+   F+ ++   P R  LT+LVEK DD  +Q+FVFFP+DEKVGVKPI++ +++M +E V RAI+V++  ITP AR A+QEL      ++E FK++EL++DITEHTLVPEHQVL++ +K ELLKRY+LKDTQLPRIQ  DPVARFYGM++GQV KI RPSETAGRYVTYR+C+
Sbjct:   23 SGVSLNPEASRLFRVYKTVSAMLHKRGYLVPRDIRDMSPATFVEKFTEMPTRESLTMLVEKDDDESNQLFVFFPEDEKVGVKPIKTLTDRMKDESVSRAILVLRVDITPIARQALQEL--SESFRIEHFKESELLVDITEHTLVPEHQVLSTNEKQELLKRYRLKDTQLPRIQPNDPVARFYGMKRGQVVKIIRPSETAGRYVTYRVCL 229

[Close]

BLAST of mRNA_P-lacustris_contig928.15702.1 vs. uniprot
Match: A0A2P4Y6Z7_9STRA (DNA-directed RNA polymerase I, II, and III subunit RPABC1 n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4Y6Z7_9STRA)

HSP 1 Score: 237 bits (605), Expect = 2.260e-75
Identity = 118/205 (57.56%), Postives = 157/205 (76.59%), Query Frame = 0

Query:    8 LSDEGHKVYRVRQTCMKMLEKRGYNVLQEHVSMTSEAFLNQYGPEPNRHDLTLLVEKVDDPMDQIFVFFPDDEKVGVKPIRSYSEKMLEEEVKRAIIVIKGGITPFARSAIQELCAQREVQVEDFKDAELMLDITEHTLVPEHQVLTSEQKAELLKRYKLKDTQLPRIQSTDPVARFYGMQKGQVCKITRPSETAGRYVTYRLCI 212
            L+ E  ++YRVR+T +KML  R Y V +  + MT EAF  Q+G  P R  +T+LVEK+DDP D +FVFFP+D KVGVKPIR+Y  +M +E V +AI+V++ GITPFAR A+ E+  +   ++E FK+ EL++DITEHTLVP H+VL  ++KA LLKRY+++D+QLPR+Q TDP+AR+YGM +GQV KI RPSETAGRYVTYR  I
Sbjct:   75 LTPEASRLYRVRKTTVKMLHNRDYIVSENELVMTPEAFQTQFGDNPTREMMTILVEKMDDPSDNLFVFFPEDTKVGVKPIRNYCNRMKDENVTKAILVVQEGITPFARQALNEMAPR--YKIEHFKETELLVDITEHTLVPVHRVLGRDEKAALLKRYRIRDSQLPRMQVTDPIARYYGMTRGQVVKIIRPSETAGRYVTYRAVI 277

[Close]

BLAST of mRNA_P-lacustris_contig928.15702.1 vs. uniprot
Match: A0A7R9WH73_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9WH73_9STRA)

HSP 1 Score: 236 bits (601), Expect = 1.210e-74
Identity = 118/205 (57.56%), Postives = 157/205 (76.59%), Query Frame = 0

Query:    8 LSDEGHKVYRVRQTCMKMLEKRGYNVLQEHVSMTSEAFLNQYGPEPNRHDLTLLVEKVDDPMDQIFVFFPDDEKVGVKPIRSYSEKMLEEEVKRAIIVIKGGITPFARSAIQELCAQREVQVEDFKDAELMLDITEHTLVPEHQVLTSEQKAELLKRYKLKDTQLPRIQSTDPVARFYGMQKGQVCKITRPSETAGRYVTYRLCI 212
            L+ E  +++RV +T   ML KRGY V ++   MT  AF  ++G  P R  LT+LVEK DD  +Q+FVFFP+DEKVGVKPI+ Y+++M EE V  A++V++  ITPFA+ A+QE+      ++E FK+AEL++DIT+H LVPEHQVL+  +K ELLKRY+LK+TQLPRIQ  DPVAR+YGM++GQV KI RPSETAGRYVTYR+C+
Sbjct:   84 LTPEASRLFRVYKTVAAMLTKRGYMVPRDMRDMTPSAFTEKFGEYPARESLTILVEKADDETNQLFVFFPEDEKVGVKPIKIYTDRMKEEAVSNAVLVLRVDITPFAKQAVQEM--SDSFRIEHFKEAELLVDITDHQLVPEHQVLSQNEKQELLKRYRLKETQLPRIQPNDPVARYYGMKRGQVVKIIRPSETAGRYVTYRICM 286

The following BLAST results are available for this feature:

BLAST of mRNA_P-lacustris_contig928.15702.1 vs. uniprot

BLAST of mRNA_P-lacustris_contig928.15702.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D7G1Y9_ECTSI	1.470e-145	97.64	Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2...	[more]
A0A835YLJ3_9STRA	4.940e-96	66.19	RNA polymerase Rpb5, C-terminal domain-containing ...	[more]
W4GMP1_9STRA	1.160e-78	58.42	Uncharacterized protein n=3 Tax=Aphanomyces TaxID=...	[more]
A0A482UUV9_9ARCH	1.150e-77	59.02	DNA-directed RNA polymerase subunit Rpo5 n=1 Tax=a...	[more]
K3WP89_GLOUD	7.950e-77	57.43	Uncharacterized protein n=27 Tax=Oomycota TaxID=47...	[more]
A0A6S9BLJ2_9STRA	1.200e-76	59.02	Hypothetical protein n=2 Tax=Ditylum brightwellii ...	[more]
A0A067CT03_SAPPC	1.710e-76	57.43	Uncharacterized protein n=4 Tax=Saprolegniaceae Ta...	[more]
A0A7S2KP14_9STRA	6.860e-76	57.89	Hypothetical protein n=1 Tax=Leptocylindrus danicu...	[more]
A0A2P4Y6Z7_9STRA	2.260e-75	57.56	DNA-directed RNA polymerase I, II, and III subunit...	[more]
A0A7R9WH73_9STRA	1.210e-74	57.56	Hypothetical protein n=1 Tax=Pseudictyota dubia Ta...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR035913	RPB5-like RNA polymerase subunit superfamily	GENE3D	3.90.940.20		coord: 140..212 e-value: 1.3E-34 score: 119.6
IPR035913	RPB5-like RNA polymerase subunit superfamily	SUPERFAMILY	55287	RPB5-like RNA polymerase subunit	coord: 137..212
IPR005571	RNA polymerase, Rpb5, N-terminal	PFAM	PF03871	RNA_pol_Rpb5_N	coord: 10..94 e-value: 2.7E-27 score: 95.2
IPR014381	DNA-directed RNA polymerase RPB5 subunit, eukaryote/virus	PIRSF	PIRSF000747	RPB5	coord: 7..212 e-value: 2.0E-75 score: 250.8
IPR000783	RNA polymerase, subunit H/Rpb5 C-terminal	PFAM	PF01191	RNA_pol_Rpb5_C	coord: 140..211 e-value: 5.5E-33 score: 112.7
IPR036710	RNA polymerase Rpb5, N-terminal domain superfamily	GENE3D	3.40.1340.10		coord: 8..139 e-value: 1.0E-37 score: 131.3
IPR036710	RNA polymerase Rpb5, N-terminal domain superfamily	SUPERFAMILY	53036	Eukaryotic RPB5 N-terminal domain	coord: 10..139
IPR039531	DNA-directed RNA polymerase subunit Rpb5-like	PANTHER	PTHR10535	DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC1	coord: 10..210
None	No IPR available	PANTHER	PTHR10535:SF8		coord: 10..210
None	No IPR available	PRODOM	PD005155		coord: 146..210 e-value: 1.0E-23 score: 271.0
IPR020609	Archaeal RpoH /eukaryotic RPB5 RNA polymerase subunit	HAMAP	MF_00025	RNApol_RpoH_RPB5	coord: 139..212 score: 21.121

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
P-lacustris_contig928	contig	P-lacustris_contig928:48439..51845 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Pleurocladia lacustris SAG_25_93	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_P-lacustris_contig928.15702.1	mRNA_P-lacustris_contig928.15702.1	Pleurocladia lacustris SAG_25_93	mRNA	P-lacustris_contig928 47568..52092 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_P-lacustris_contig928.15702.1 ID=prot_P-lacustris_contig928.15702.1|Name=mRNA_P-lacustris_contig928.15702.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=213bp
MEGSGPRLSDEGHKVYRVRQTCMKMLEKRGYNVLQEHVSMTSEAFLNQYG
PEPNRHDLTLLVEKVDDPMDQIFVFFPDDEKVGVKPIRSYSEKMLEEEVK
RAIIVIKGGITPFARSAIQELCAQREVQVEDFKDAELMLDITEHTLVPEH
QVLTSEQKAELLKRYKLKDTQLPRIQSTDPVARFYGMQKGQVCKITRPSE
TAGRYVTYRLCI*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR035913	RPB5-like_sf
IPR005571	RNA_pol_Rpb5_N
IPR014381	DNA_RNA_pol_RPB5_euk/virus
IPR000783	RNA_pol_subH/Rpb5_C
IPR036710	RNA_pol_Rpb5_N_sf
IPR039531	Rpb5-like
IPR020609	RpoH/RPB5