mRNA_P-lacustris_contig928.15702.1 (mRNA) Pleurocladia lacustris SAG_25_93

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-lacustris_contig928.15702.1
Unique NamemRNA_P-lacustris_contig928.15702.1
TypemRNA
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Homology
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BLAST of mRNA_P-lacustris_contig928.15702.1 vs. uniprot
Match: D7G1Y9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G1Y9_ECTSI)

HSP 1 Score: 411 bits (1057), Expect = 3.310e-139
Identity = 207/212 (97.64%), Postives = 211/212 (99.53%), Query Frame = 2 
Query:  248 MEGSGPRLSDEGHKVYRVRQTCMKMLEKRGYNVLQEHVSMTSEAFLNQYGPEPNRHDLTLLVEKVDDPMDQIFVFFPDDEKVGVKPIRSYSEKMLEEEVKRAIIVIKGGITPFARSAIQELCAQREVQVEDFKDAELMLDITEHTLVPEHQVLTSEQKAELLKRYKLKDTQLPRIQSTDPVARFYGMQKGQVCKITRPSETAGRYVTYRLCI 883
            MEGSGPRLSDEGHK+YR+RQTCMKMLEKRGYNVLQEHVSMTSEAFL QYGPEPNRHDLTLLVEKVDDPMDQIFVFFPDDEKVGVKPIRSYSEKMLEEEVKRAIIVIKGGITPFARSAIQELCAQREVQVEDFKDAELMLDITEHTLVPEHQVL+SEQKAELLKRYKLKDTQLPRIQSTDPVARF+GMQKGQVCKITRPSETAGRYVTYRLCI
Sbjct:    1 MEGSGPRLSDEGHKIYRIRQTCMKMLEKRGYNVLQEHVSMTSEAFLQQYGPEPNRHDLTLLVEKVDDPMDQIFVFFPDDEKVGVKPIRSYSEKMLEEEVKRAIIVIKGGITPFARSAIQELCAQREVQVEDFKDAELMLDITEHTLVPEHQVLSSEQKAELLKRYKLKDTQLPRIQSTDPVARFFGMQKGQVCKITRPSETAGRYVTYRLCI 212
[Close]
BLAST of mRNA_P-lacustris_contig928.15702.1 vs. uniprot
Match: A0A835YLJ3_9STRA (RNA polymerase Rpb5, C-terminal domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLJ3_9STRA)

HSP 1 Score: 286 bits (733), Expect = 2.060e-90
Identity = 139/209 (66.51%), Postives = 175/209 (83.73%), Query Frame = 2 
Query:  269 LSDEGHKVYRVRQTCMKMLEKRGYNVLQEHVS----MTSEAFLNQYGPEPNRHDLTLLVEKVDDPMDQIFVFFPDDEKVGVKPIRSYSEKMLEEEVKRAIIVIKGGITPFARSAIQELCAQREVQVEDFKDAELMLDITEHTLVPEHQVLTSEQKAELLKRYKLKDTQLPRIQSTDPVARFYGMQKGQVCKITRPSETAGRYVTYRLCI 883
            LS EG K++R+R+TC+KML KRGYNV  EH+S      ++ F+ Q+G  P+R  +T+LVEKVDDP D+IFVFFPD+EKVGVK IR+Y ++M +E V+++IIV++GG+TP +R A  +LC QR VQ+EDFKDAELM+DIT+H LVPEHQVL +E+KAELLKRYKL DTQLPRI STDPVAR+YG+Q+GQV KI RPSETAGRYVTYRLC+
Sbjct:    5 LSLEGSKLFRIRKTCLKMLSKRGYNVADEHISGSNASATQRFIEQFGDNPSREQMTILVEKVDDPSDRIFVFFPDEEKVGVKTIRTYGDRMKDENVRKSIIVVRGGMTPLSRDANAQLCQQRGVQIEDFKDAELMVDITDHVLVPEHQVLNNEEKAELLKRYKLTDTQLPRIHSTDPVARYYGLQRGQVVKIIRPSETAGRYVTYRLCM 213
[Close]
BLAST of mRNA_P-lacustris_contig928.15702.1 vs. uniprot
Match: W4GMP1_9STRA (Uncharacterized protein n=3 Tax=Aphanomyces TaxID=100860 RepID=W4GMP1_9STRA)

HSP 1 Score: 243 bits (620), Expect = 1.080e-73
Identity = 118/202 (58.42%), Postives = 158/202 (78.22%), Query Frame = 2 
Query:  269 LSDEGHKVYRVRQTCMKMLEKRGYNVLQEHVSMTSEAFLNQYGPEPNRHDLTLLVEKVDDPMDQIFVFFPDDEKVGVKPIRSYSEKMLEEEVKRAIIVIKGGITPFARSAIQELCAQREVQVEDFKDAELMLDITEHTLVPEHQVLTSEQKAELLKRYKLKDTQLPRIQSTDPVARFYGMQKGQVCKITRPSETAGRYVTYR 874
            L+ E  K++RVR+T +KML  RGY V +E +  T E F+ Q+G  P R  +T+LVEKVDDP D +FVF+P+D KVGVKPIR+Y  +M +E V +AI++++ GITPFA+ A+ E+  +   +++ FK+ EL++DITEHTLVP H+VLT E+K  LLKRYKLKDTQLPR+Q++DP+AR+YGM +GQV KI RPSETAGRYVTYR
Sbjct:    3 LNPEASKLFRVRKTVVKMLHNRGYIVSEEELHRTPEGFIGQFGENPTRDTMTILVEKVDDPSDNLFVFYPEDAKVGVKPIRNYCNRMKDENVTKAILIVQDGITPFAKQALNEMAPR--YKIDHFKENELLVDITEHTLVPVHKVLTKEEKLALLKRYKLKDTQLPRMQASDPIARYYGMSRGQVVKIIRPSETAGRYVTYR 202
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BLAST of mRNA_P-lacustris_contig928.15702.1 vs. uniprot
Match: A0A482UUV9_9ARCH (DNA-directed RNA polymerase subunit Rpo5 n=1 Tax=archaeon TaxID=1906665 RepID=A0A482UUV9_9ARCH)

HSP 1 Score: 240 bits (613), Expect = 1.450e-72
Identity = 121/205 (59.02%), Postives = 162/205 (79.02%), Query Frame = 2 
Query:  269 LSDEGHKVYRVRQTCMKMLEKRGYNVLQEHVSMTSEAFLNQYGPEPNRHDLTLLVEKVDDPMDQIFVFFPDDEKVGVKPIRSYSEKMLEEEVKRAIIVIKGGITPFARSAIQELCAQREVQVEDFKDAELMLDITEHTLVPEHQVLTSEQKAELLKRYKLKDTQLPRIQSTDPVARFYGMQKGQVCKITRPSETAGRYVTYRLCI 883
            L+ E  K++RVR+TC+KML KRGY V +  + M+++ F +++G  P+R  LT+L EK DDP DQIFVFFP+DEKVGV PI+ Y ++M    V RAIIV+K  +TPFAR+A++E+ + R  +VE F+DAEL++DITEH LVPEH VLT +QK ELL+RY+LK +QLPRIQ  DP+AR+ G+++GQV KI RPSETAGRYVTYR+C+
Sbjct:    8 LNPEASKMFRVRKTCLKMLSKRGYVVDENALQMSTDQFRDKFGETPSRDSLTILAEKSDDPTDQIFVFFPEDEKVGVNPIKIYCQRMKTANVYRAIIVVKINLTPFARTAVKEM-SLRGYRVEYFRDAELLVDITEHKLVPEHIVLTDQQKLELLERYRLKVSQLPRIQIADPIARYMGLRQGQVVKIVRPSETAGRYVTYRICV 211
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BLAST of mRNA_P-lacustris_contig928.15702.1 vs. uniprot
Match: K3WP89_GLOUD (Uncharacterized protein n=27 Tax=Oomycota TaxID=4762 RepID=K3WP89_GLOUD)

HSP 1 Score: 238 bits (608), Expect = 6.750e-72
Identity = 116/202 (57.43%), Postives = 158/202 (78.22%), Query Frame = 2 
Query:  269 LSDEGHKVYRVRQTCMKMLEKRGYNVLQEHVSMTSEAFLNQYGPEPNRHDLTLLVEKVDDPMDQIFVFFPDDEKVGVKPIRSYSEKMLEEEVKRAIIVIKGGITPFARSAIQELCAQREVQVEDFKDAELMLDITEHTLVPEHQVLTSEQKAELLKRYKLKDTQLPRIQSTDPVARFYGMQKGQVCKITRPSETAGRYVTYR 874
            L+ E  ++YRVR+T +KML  RGY V +  + MT E+F +Q+G  P R  +T+LVEK+DDP D +FVFFP+D KVGVKPIR++  +M +E V +AI+V++ GITPFAR A+ E+  +   ++E FK+ EL++DITEHTLVP H+VL  ++KA LLKRY++KD+QLPR+Q TDP+AR+YG+ +GQV KI RPSETAGRYVTYR
Sbjct:    4 LTPEASRLYRVRKTTVKMLHNRGYIVSENELVMTPESFQHQFGDNPTREMMTILVEKIDDPSDNLFVFFPEDTKVGVKPIRTFCNRMKDENVSKAILVVQEGITPFARQALNEMAPR--YKIEHFKETELLVDITEHTLVPVHRVLNRDEKAALLKRYRIKDSQLPRMQVTDPIARYYGITRGQVVKIIRPSETAGRYVTYR 203
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BLAST of mRNA_P-lacustris_contig928.15702.1 vs. uniprot
Match: A0A067CT03_SAPPC (Uncharacterized protein n=4 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067CT03_SAPPC)

HSP 1 Score: 238 bits (606), Expect = 1.430e-71
Identity = 116/202 (57.43%), Postives = 156/202 (77.23%), Query Frame = 2 
Query:  269 LSDEGHKVYRVRQTCMKMLEKRGYNVLQEHVSMTSEAFLNQYGPEPNRHDLTLLVEKVDDPMDQIFVFFPDDEKVGVKPIRSYSEKMLEEEVKRAIIVIKGGITPFARSAIQELCAQREVQVEDFKDAELMLDITEHTLVPEHQVLTSEQKAELLKRYKLKDTQLPRIQSTDPVARFYGMQKGQVCKITRPSETAGRYVTYR 874
            L+ E  ++YRVR+T +KML  RGY V  + +  T++ F  Q+G  P R  +T+LVEKVDDP D +FVF+PDD KVGVKPIR+Y  +M +E V +AI++++ GITPFA+ A+ E+  +   +++ FK+ EL++DITEHTLVP H+VLT E+K  LLKRYKLKD+QLPR+Q +DP+AR+YGM +GQV KI RPSETAGRYVTYR
Sbjct:    6 LNPEASRLYRVRKTVVKMLANRGYIVSDDELKRTTDGFAAQFGENPTREMMTILVEKVDDPSDNLFVFYPDDAKVGVKPIRTYCNRMKDENVTKAILIVQDGITPFAKQALNEMAPR--YKIDHFKETELLVDITEHTLVPVHKVLTREEKIALLKRYKLKDSQLPRMQVSDPIARYYGMTRGQVVKIIRPSETAGRYVTYR 205
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BLAST of mRNA_P-lacustris_contig928.15702.1 vs. uniprot
Match: A0A6S9BLJ2_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6S9BLJ2_9STRA)

HSP 1 Score: 238 bits (608), Expect = 1.440e-71
Identity = 121/205 (59.02%), Postives = 159/205 (77.56%), Query Frame = 2 
Query:  269 LSDEGHKVYRVRQTCMKMLEKRGYNVLQEHVSMTSEAFLNQYGPEPNRHDLTLLVEKVDDPMDQIFVFFPDDEKVGVKPIRSYSEKMLEEEVKRAIIVIKGGITPFARSAIQELCAQREVQVEDFKDAELMLDITEHTLVPEHQVLTSEQKAELLKRYKLKDTQLPRIQSTDPVARFYGMQKGQVCKITRPSETAGRYVTYRLCI 883
            L+ E  ++YRV +T   MLEKRGY V +E  +M+++AF  ++G +P R  LT+LVEK DD  +Q+FVFFP DEKVGVKPI+  ++KM EE V  AI+V++  IT FA+ A+QE+      ++E FK+AEL++DITEH LVPEHQVL+  +K ELLKRY+LK+TQLPRIQ  DPVAR+YGM++GQV KI RPSETAGRYVTYR+C+
Sbjct:   27 LTPEASRLYRVYKTVAAMLEKRGYMVPREIRTMSADAFTQKFGEKPTRQSLTILVEKADDESNQLFVFFPIDEKVGVKPIKELTDKMKEETVSNAILVLREDITAFAKQAVQEM--SDSFRIEHFKEAELLVDITEHNLVPEHQVLSKNEKEELLKRYRLKETQLPRIQPNDPVARYYGMKRGQVVKIIRPSETAGRYVTYRICM 229
[Close]
BLAST of mRNA_P-lacustris_contig928.15702.1 vs. uniprot
Match: A0A7S2KP14_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2KP14_9STRA)

HSP 1 Score: 236 bits (602), Expect = 1.110e-70
Identity = 121/209 (57.89%), Postives = 160/209 (76.56%), Query Frame = 2 
Query:  257 SGPRLSDEGHKVYRVRQTCMKMLEKRGYNVLQEHVSMTSEAFLNQYGPEPNRHDLTLLVEKVDDPMDQIFVFFPDDEKVGVKPIRSYSEKMLEEEVKRAIIVIKGGITPFARSAIQELCAQREVQVEDFKDAELMLDITEHTLVPEHQVLTSEQKAELLKRYKLKDTQLPRIQSTDPVARFYGMQKGQVCKITRPSETAGRYVTYRLCI 883
            SG  L+ E  +++RV +T   ML KRGY V ++   M+   F+ ++   P R  LT+LVEK DD  +Q+FVFFP+DEKVGVKPI++ +++M +E V RAI+V++  ITP AR A+QEL      ++E FK++EL++DITEHTLVPEHQVL++ +K ELLKRY+LKDTQLPRIQ  DPVARFYGM++GQV KI RPSETAGRYVTYR+C+
Sbjct:   23 SGVSLNPEASRLFRVYKTVSAMLHKRGYLVPRDIRDMSPATFVEKFTEMPTRESLTMLVEKDDDESNQLFVFFPEDEKVGVKPIKTLTDRMKDESVSRAILVLRVDITPIARQALQEL--SESFRIEHFKESELLVDITEHTLVPEHQVLSTNEKQELLKRYRLKDTQLPRIQPNDPVARFYGMKRGQVVKIIRPSETAGRYVTYRVCL 229
[Close]
BLAST of mRNA_P-lacustris_contig928.15702.1 vs. uniprot
Match: A0A2P4Y6Z7_9STRA (DNA-directed RNA polymerase I, II, and III subunit RPABC1 n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4Y6Z7_9STRA)

HSP 1 Score: 237 bits (604), Expect = 2.630e-70
Identity = 118/205 (57.56%), Postives = 157/205 (76.59%), Query Frame = 2 
Query:  269 LSDEGHKVYRVRQTCMKMLEKRGYNVLQEHVSMTSEAFLNQYGPEPNRHDLTLLVEKVDDPMDQIFVFFPDDEKVGVKPIRSYSEKMLEEEVKRAIIVIKGGITPFARSAIQELCAQREVQVEDFKDAELMLDITEHTLVPEHQVLTSEQKAELLKRYKLKDTQLPRIQSTDPVARFYGMQKGQVCKITRPSETAGRYVTYRLCI 883
            L+ E  ++YRVR+T +KML  R Y V +  + MT EAF  Q+G  P R  +T+LVEK+DDP D +FVFFP+D KVGVKPIR+Y  +M +E V +AI+V++ GITPFAR A+ E+  +   ++E FK+ EL++DITEHTLVP H+VL  ++KA LLKRY+++D+QLPR+Q TDP+AR+YGM +GQV KI RPSETAGRYVTYR  I
Sbjct:   75 LTPEASRLYRVRKTTVKMLHNRDYIVSENELVMTPEAFQTQFGDNPTREMMTILVEKMDDPSDNLFVFFPEDTKVGVKPIRNYCNRMKDENVTKAILVVQEGITPFARQALNEMAPR--YKIEHFKETELLVDITEHTLVPVHRVLGRDEKAALLKRYRIRDSQLPRMQVTDPIARYYGMTRGQVVKIIRPSETAGRYVTYRAVI 277
[Close]
BLAST of mRNA_P-lacustris_contig928.15702.1 vs. uniprot
Match: A0A7R9WH73_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9WH73_9STRA)

HSP 1 Score: 235 bits (600), Expect = 1.360e-69
Identity = 118/205 (57.56%), Postives = 157/205 (76.59%), Query Frame = 2 
Query:  269 LSDEGHKVYRVRQTCMKMLEKRGYNVLQEHVSMTSEAFLNQYGPEPNRHDLTLLVEKVDDPMDQIFVFFPDDEKVGVKPIRSYSEKMLEEEVKRAIIVIKGGITPFARSAIQELCAQREVQVEDFKDAELMLDITEHTLVPEHQVLTSEQKAELLKRYKLKDTQLPRIQSTDPVARFYGMQKGQVCKITRPSETAGRYVTYRLCI 883
            L+ E  +++RV +T   ML KRGY V ++   MT  AF  ++G  P R  LT+LVEK DD  +Q+FVFFP+DEKVGVKPI+ Y+++M EE V  A++V++  ITPFA+ A+QE+      ++E FK+AEL++DIT+H LVPEHQVL+  +K ELLKRY+LK+TQLPRIQ  DPVAR+YGM++GQV KI RPSETAGRYVTYR+C+
Sbjct:   84 LTPEASRLFRVYKTVAAMLTKRGYMVPRDMRDMTPSAFTEKFGEYPARESLTILVEKADDETNQLFVFFPEDEKVGVKPIKIYTDRMKEEAVSNAVLVLRVDITPFAKQAVQEM--SDSFRIEHFKEAELLVDITDHQLVPEHQVLSQNEKQELLKRYRLKETQLPRIQPNDPVARYYGMKRGQVVKIIRPSETAGRYVTYRICM 286
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig928.15702.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G1Y9_ECTSI3.310e-13997.64Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YLJ3_9STRA2.060e-9066.51RNA polymerase Rpb5, C-terminal domain-containing ... [more]
W4GMP1_9STRA1.080e-7358.42Uncharacterized protein n=3 Tax=Aphanomyces TaxID=... [more]
A0A482UUV9_9ARCH1.450e-7259.02DNA-directed RNA polymerase subunit Rpo5 n=1 Tax=a... [more]
K3WP89_GLOUD6.750e-7257.43Uncharacterized protein n=27 Tax=Oomycota TaxID=47... [more]
A0A067CT03_SAPPC1.430e-7157.43Uncharacterized protein n=4 Tax=Saprolegniaceae Ta... [more]
A0A6S9BLJ2_9STRA1.440e-7159.02Hypothetical protein n=2 Tax=Ditylum brightwellii ... [more]
A0A7S2KP14_9STRA1.110e-7057.89Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A2P4Y6Z7_9STRA2.630e-7057.56DNA-directed RNA polymerase I, II, and III subunit... [more]
A0A7R9WH73_9STRA1.360e-6957.56Hypothetical protein n=1 Tax=Pseudictyota dubia Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig928contigP-lacustris_contig928:47568..52092 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score420.2
Seed ortholog evalue5.6e-115
Seed eggNOG ortholog2880.D7G1Y9
Preferred nameRPB5
KEGG rclassRC02795
KEGG koko:K03013
KEGG ReactionR00435,R00441,R00442,R00443
KEGG Pathwayko00230,ko00240,ko01100,ko03020,ko04623,ko05016,ko05169,map00230,map00240,map01100,map03020,map04623,map05016,map05169
KEGG ModuleM00180,M00181,M00182
Hectar predicted targeting categoryother localisation
GOsGO:0000428,GO:0001054,GO:0003674,GO:0003700,GO:0003824,GO:0003899,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005665,GO:0005666,GO:0005730,GO:0005736,GO:0006139,GO:0006351,GO:0006353,GO:0006355,GO:0006360,GO:0006366,GO:0006383,GO:0006386,GO:0006399,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009304,GO:0009719,GO:0009725,GO:0009733,GO:0009889,GO:0009987,GO:0010033,GO:0010467,GO:0010468,GO:0010556,GO:0016070,GO:0016591,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0030880,GO:0031323,GO:0031326,GO:0031974,GO:0031981,GO:0032774,GO:0032991,GO:0034062,GO:0034641,GO:0034645,GO:0034654,GO:0034660,GO:0042221,GO:0042797,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044452,GO:0044464,GO:0046483,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051252,GO:0055029,GO:0060255,GO:0061695,GO:0065007,GO:0070013,GO:0071704,GO:0080090,GO:0090304,GO:0097659,GO:0097747,GO:0098781,GO:0140098,GO:0140110,GO:1901360,GO:1901362,GO:1901576,GO:1902494,GO:1903506,GO:1990234,GO:2000112,GO:2001141
EggNOG free text desc.DNA-directed 5'-3' RNA polymerase activity
EggNOG OGsCOG2012@1,KOG3218@2759
Ec32 ortholog descriptionRNA polymerase, subunit H/Rpb5 C-terminal
Ec32 orthologEc-07_003640.1
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01611,ko00000,ko00001,ko00002,ko03021,ko03400
Exons5
Model size1757
Cds size639
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817356.2494476-UTR-P-lacustris_contig928:47567..484381622817356.2494476-UTR-P-lacustris_contig928:47567..48438Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig928 47568..48438 -
1693495001.86812-UTR-P-lacustris_contig928:47567..484381693495001.86812-UTR-P-lacustris_contig928:47567..48438Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig928 47568..48438 -
1622817356.3193722-UTR-P-lacustris_contig928:51845..520921622817356.3193722-UTR-P-lacustris_contig928:51845..52092Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig928 51846..52092 -
1693495001.9662108-UTR-P-lacustris_contig928:51845..520921693495001.9662108-UTR-P-lacustris_contig928:51845..52092Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig928 51846..52092 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817356.261321-CDS-P-lacustris_contig928:48438..485131622817356.261321-CDS-P-lacustris_contig928:48438..48513Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig928 48439..48513 -
1693495001.8852623-CDS-P-lacustris_contig928:48438..485131693495001.8852623-CDS-P-lacustris_contig928:48438..48513Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig928 48439..48513 -
1622817356.2718797-CDS-P-lacustris_contig928:49043..491541622817356.2718797-CDS-P-lacustris_contig928:49043..49154Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig928 49044..49154 -
1693495001.8997157-CDS-P-lacustris_contig928:49043..491541693495001.8997157-CDS-P-lacustris_contig928:49043..49154Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig928 49044..49154 -
1622817356.2850344-CDS-P-lacustris_contig928:49763..498381622817356.2850344-CDS-P-lacustris_contig928:49763..49838Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig928 49764..49838 -
1693495001.919164-CDS-P-lacustris_contig928:49763..498381693495001.919164-CDS-P-lacustris_contig928:49763..49838Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig928 49764..49838 -
1622817356.2959206-CDS-P-lacustris_contig928:50276..504621622817356.2959206-CDS-P-lacustris_contig928:50276..50462Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig928 50277..50462 -
1693495001.9334211-CDS-P-lacustris_contig928:50276..504621693495001.9334211-CDS-P-lacustris_contig928:50276..50462Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig928 50277..50462 -
1622817356.3082604-CDS-P-lacustris_contig928:51653..518451622817356.3082604-CDS-P-lacustris_contig928:51653..51845Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig928 51654..51845 -
1693495001.9485643-CDS-P-lacustris_contig928:51653..518451693495001.9485643-CDS-P-lacustris_contig928:51653..51845Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig928 51654..51845 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig928.15702.1prot_P-lacustris_contig928.15702.1Pleurocladia lacustris SAG_25_93polypeptideP-lacustris_contig928 48439..51845 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-lacustris_contig928.15702.1

>prot_P-lacustris_contig928.15702.1 ID=prot_P-lacustris_contig928.15702.1|Name=mRNA_P-lacustris_contig928.15702.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=213bp
MEGSGPRLSDEGHKVYRVRQTCMKMLEKRGYNVLQEHVSMTSEAFLNQYG
PEPNRHDLTLLVEKVDDPMDQIFVFFPDDEKVGVKPIRSYSEKMLEEEVK
RAIIVIKGGITPFARSAIQELCAQREVQVEDFKDAELMLDITEHTLVPEH
QVLTSEQKAELLKRYKLKDTQLPRIQSTDPVARFYGMQKGQVCKITRPSE
TAGRYVTYRLCI*
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mRNA from alignment at P-lacustris_contig928:47568..52092-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-lacustris_contig928.15702.1 ID=mRNA_P-lacustris_contig928.15702.1|Name=mRNA_P-lacustris_contig928.15702.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=4525bp|location=Sequence derived from alignment at P-lacustris_contig928:47568..52092- (Pleurocladia lacustris SAG_25_93)
TGGGATCGGGTCAAATCCGAGCATTCTGAGGCCAAAGAAAGGTTAGACCA
GGGAGGATCTCCACACGCAGCGATATCCTGCACATCAGTTAAGTTCAGCA
GCATCAACTGAGCTTACGGCTAACGTCTTCGACTCTGTTTTTGGGTGGAT
CTCTGTGTGGTGCACATCTAGTCAAGCTCAACTTTCAGGGGGGAATCTCT
TACATCGCCAGCAGGAAGGGCAAGCTGCGAGGAGGAGGTGTGTGCGGATG
GAGGGCTCAGGACCGAGACTGTCAGACGAAGGGCACAAGGTGTACCGGGT
TCGACAGACGTGCATGAAGATGCTGGAGAAGCGAGGCTACAACGTGCTGC
AGGAGCACGTCTCCATGACCTCCGAAGCGTTTTTGAACCAGTACGGGCCT
GAGCCAAATCGACACGACCTGACCCTCTTGGTAGAGAAGGTGAGCGATCG
TGGGGGCGACGCGGAAGGAATACGGTGGGCGTCAAGTGCTGCGTCCATGT
AGTCTAATGGTACGAATGGGCGGGTTCCGAGCTAAAGCCGAATTACCTCT
GCGGGCACGAAAAAACGAAGCATAAAATCGACTTGCACAGATCGTTTTGA
GGCCGTGTTGAGGCCGTTTTCTTATTGAGGCGGATTCTCAAATCGATGAA
GAGCAAAATCCGATGTCGTCTATTTTCACATGGCTGGGCATTCGGGCACC
ACGAACGTATTTTTTTCTTGACTTCCACAGACCGTCATTATTATGGCCAA
GGATCATGTGATTAAATGTTCAATATCGTAATCGGGGATGGGAAGAAGTC
GTCCCCACCCCCCAAACAAATCAGACTTTAGCTCGGAACCCGCCAGTCGG
GGGAATTACTGCTGTATCACGATCTTGACACGGAATTAGTGGCGTGGTGG
TAGGGGGAAGTCGACGAGGACTAATGTACTGCTGTGTACTGTGTACCCGC
GTCTGGTCAAGCCGGGGGGGTGTATATCGCCACACAGCCTCGGGTGCTAC
GTAACTTCTCCTGTGATATTTGTCGCGCAGTGATTGTTCAATTCAGCCGG
TGTCGGGGCTATGTATGCCTGCTATGTAAATATGCCTGTGACTTTCCCAC
TGTGTTCGTGTGATATTTCAGGCGAAAATACAGAGCAACGAACCGCAGTA
CAAGTAGTTCACAAGAACGCCTTCTTCGAAATGCATTTTGCGCGGAACTG
GCTTGTCAGGCGGACGGCCCGACCCCCTTTCAACAACGAGACGGTCGGGA
TAGTGGTTTATACCGGTAGTTAGCTGCTGTTGTGTTCTGTATATAACAGC
TGGCTATTTTTGTGAATCGTGCTGTTACTGCTGTGTGTTGATTGATACCT
GTAGTTCGAGTTGTAAAGATGTCCGATGTGTGTTTCACAGCTCATGCCTA
CATCGTCTGCTGTTGCTGTTGCTGCTGCTGCTGCTGCTGCTGGCGTCGCA
GCCGGACAGGATGTTTTTTTTTTTTGCCCGGACGTATATGGAACTGTATA
TCGAAGTGCTGGTAATACATGTACAAGCCCTCTCTACTGCCTGTTTCGGC
TTCATTTTGACCCATCCTACCGGCTTCTGCTGCTGCTGCTGCTGCTGCTG
CTGCTGCTGCTGCTGCTGCTGCTGAGGCAGGTGGACGACCCGATGGATCA
GATCTTCGTCTTCTTCCCCGACGACGAGAAGGTCGGCGTCAAGCCAATCC
GAAGCTACTCGGAGAAGATGCTGGAGGAAGAGGTGAAGAGGGCCATCATC
GTCATCAAGGGCGGCATCACCCCGTTCGCCAGGTCGGCCATCCAAGAACT
CTGCGCCCAGAGAGAGGTATATCATGTACATCCATACTGCACAACACACG
CGCAACACATGCTTCCGCACGCACGACTTTGGAGTATTTGCATAGCTCTG
CGCCCAGCGAGACACCACAGCTCTGTGGTAACATTATGCGGCCGAAAATA
CTATTACACCGGTATGTTTTTGTGCAGGGGTGTGGCATCTTATGTCAACG
TTTTTGCGTGATTTGAGGGCCTTGTGTTTTTGGTGTTTTTCGGGATGAAA
AAAAAGTAACACATGGGTATGGTATTGTGTGATTTGTTTCAAGGGGTATG
GAATCTTTTTGAAGGTGTGATATCGTATGCCACCTACGGTATGCGCTACA
GAGTGTAGACTGAACATTGTCAAGTTAATTCAAATGTACATAGTTCCCAA
TGACGCCAAAACGCCAACGACAAAGACAATATTTTCATATCTCACCACGC
ATAGGTCCAGGTGGAGGACTTCAAGGACGCCGAACTCATGCTCGACATTA
CGGAGCACACGCTAGTGCCGGAGCACCAGGTGAGAGAGAGGACCATGCTC
GTCCTCTCAGGACTGCTTCTTTCAATTTTTTTCGACCAAGTGCCTAGTAC
GGGCTAGTTTCCCGGGTGCCAACTTTGCGGCCGCCGCCGTGTATTACCCT
GACCGTCTGAGGACTTCACATTATCAGCGGGGTTGGTTTTTGGGGGCTAA
ACGAACATGTTCGCGTGAAGATCTCATCATGAACTTGTTATGAATAAATG
ATGTTGCCACGTGTTTTTTTGTAGCGGCGTATCGCGCTCCGTCTGTCCAG
ATCCAACCTGTGGTGATCGTGCCCAGAAGCGTAGAGCAAGTTGGGCTCTT
ATTGAACGGATTCAACAGTTTATGTAGATATTTTGCGTGCTAAGTGGATC
GTGCCCAGAAGCCTAGAACAAGTTGGGCTCTTTGAGAATGGATGAAACAT
TTCAAGTTAAATTTGCCTCCTACTCTACGTCGATCTGTTATAAGGCACAC
ACTTTACGTCGATCTGTTATAAGGCACAACGTGCCGGAATCATGGTAGAT
ATCGAGTTCGTGGAAGCGTGGGATATTATGTATCTATCTCGTGGTAGATC
GGCGGCAAACGTTCCTACGTTCTTCTCAATCACTGCAGGTGCTCACCTCG
GAACAAAAGGCGGAGCTTCTGAAGCGGTACAAGCTGAAGGACACGCAGCT
GCCCCGGATACAGTCGACGGACCCAGTCGCGAGATTCTACGGGATGCAGG
CATGTACCAAAAGGCATCTTATCTTGACTGCAACCCTCTCCGTATCTTAA
TTGTTTCTCGCTCTCCCGAATCATTCCCTACTCGCGCCACGGTTAGACAA
ACACGGCGTACAACTGGCTTGTTTGTATAATTTTATCGGCCGGTTTGATT
TGCTTCCATTTACCAGAGAGCATTTCGCACCAAACGTGAAGGCAGGATGG
CGAGATGGGTGCATGTGTCCCTTTCGGCCGGTTAAACTTCGGGGAGAGAC
CCAAATCCCCTGCCAGTAGTTGCGCATAGACGTTGCTCTCGTCGGATTGG
TTTCTGCGTAAGGTTGGCCGTCGTACCTCCTTACGGCCCACAAATGTGTG
TATCCGTATGCATCTAAGTCTGCTGTTGCTTTGATTGTACTGCTTCGGTT
GTATACTACTGCTGCTGATCAACCTCCCCGCATCTCCGGCCTCTACCGCC
CTTCCGGCACGCTTGCTGTTTTCTTGGCTGTGTGTGTGTTCAACGGCGAT
GGTCGAAATCGCCTGTTGGGTGCGAGCAGAAGGGCCAAGTGTGCAAGATC
ACCCGACCCAGCGAGACGGCAGGGCGATACGTCACGTACCGACTTTGTAT
TTGATGTATGCCTTTCACTTTTGATTTGCTTTCTCTGCTTACGTGCTTGC
GTGTACAAGGGGCCCCTAGCCAGTGCGATCGAGCCTCGGACCGCTGGCAT
TCCAGCCAAAAAAAAAAACAAAAAAAAAAAGACGGTCGAAACCCGCAAGA
AAATGTCGTGCGCGCTGTTATGCATGTGTGTTGGCGAAGTCTTGCGTACA
AGGCGTGTGGCACCGAGTCAGTCAGCAGGCGACGCTTGCTCCGAGGGTGC
GACAGGACGGGGTCGAACGCAGCGTGTCGTCTGTCAGGTTGGCATTGGCA
GTGGCATTGGCAGTGGCAGTGGCAGGCGTAGGTGTTCCTTCTTTCTTCTG
TTGGCCATCAGAGTGGGGGCGGGTAGCAGGGGTAGCGACGGGCGAGCCGG
GCGCATTGTAGATGTGGGGCGACCCCAGCCCTACTTTTTTTGGCGTCACC
TGCCCAGCTCACGCGGCCAGTCAGCGGTGGGCCTGGATGGATGCTCGAGC
TTTTCGCGCACCAAATTTGTTGATAATCTATGTCGCTCGCTCTCTTCCGT
CTCTCGGCCATGTGCTAGGGTAGAACGTAGCAGAGAAGGCAGATTGTTCG
CGACCGCGATGCTTTCTATCGTCTTGTCGCCCTTGCCTGATTGAAATGAT
CGAGAAGACGCGTGACCCTCCGACGATGCGTCTCTACATGATGTGTTTGG
TTTTGCGAAGCCACCTACAGCAGTAGTCACGCCTGTGACAGCAGTATGCG
CGACACTATTGAGTTACAACATAATGCACAACTCGCTGACGGCGAACGGC
GAAAACTCCTGGACATGAATGCGAAAACACATGTAGTAAGGTATTGCCGA
GAATTATCGTGTACACAGCACCTGG
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Coding sequence (CDS) from alignment at P-lacustris_contig928:47568..52092-

>mRNA_P-lacustris_contig928.15702.1 ID=mRNA_P-lacustris_contig928.15702.1|Name=mRNA_P-lacustris_contig928.15702.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=1278bp|location=Sequence derived from alignment at P-lacustris_contig928:47568..52092- (Pleurocladia lacustris SAG_25_93)
ATGGAGGGCTCAGGACCGAGACTGTCAGACGAAGGGCACAAGGTGTACCG
GGTTCGACAGACGTGCATGAAGATGCTGGAGAAGCGAGGCTACAACGTGC
TGCAGGAGCACGTCTCCATGACCTCCGAAGCGTTTTTGAACCAGTACGGG
CCTGAGCCAAATCGACACGACCTGACCCTCTTGGTAGAGAAGATGGAGGG
CTCAGGACCGAGACTGTCAGACGAAGGGCACAAGGTGTACCGGGTTCGAC
AGACGTGCATGAAGATGCTGGAGAAGCGAGGCTACAACGTGCTGCAGGAG
CACGTCTCCATGACCTCCGAAGCGTTTTTGAACCAGTACGGGCCTGAGCC
AAATCGACACGACCTGACCCTCTTGGTAGAGAAGGTGGACGACCCGATGG
ATCAGATCTTCGTCTTCTTCCCCGACGACGAGAAGGTCGGCGTCAAGCCA
ATCCGAAGCTACTCGGAGAAGATGCTGGAGGAAGAGGTGAAGAGGGCCAT
CATCGTCATCAAGGGCGGCATCACCCCGTTCGCCAGGTCGGCCATCCAAG
AACTCTGCGCCCAGAGAGAGGTGGACGACCCGATGGATCAGATCTTCGTC
TTCTTCCCCGACGACGAGAAGGTCGGCGTCAAGCCAATCCGAAGCTACTC
GGAGAAGATGCTGGAGGAAGAGGTGAAGAGGGCCATCATCGTCATCAAGG
GCGGCATCACCCCGTTCGCCAGGTCGGCCATCCAAGAACTCTGCGCCCAG
AGAGAGGTCCAGGTGGAGGACTTCAAGGACGCCGAACTCATGCTCGACAT
TACGGAGCACACGCTAGTGCCGGAGCACCAGGTCCAGGTGGAGGACTTCA
AGGACGCCGAACTCATGCTCGACATTACGGAGCACACGCTAGTGCCGGAG
CACCAGGTGCTCACCTCGGAACAAAAGGCGGAGCTTCTGAAGCGGTACAA
GCTGAAGGACACGCAGCTGCCCCGGATACAGTCGACGGACCCAGTCGCGA
GATTCTACGGGATGCAGGTGCTCACCTCGGAACAAAAGGCGGAGCTTCTG
AAGCGGTACAAGCTGAAGGACACGCAGCTGCCCCGGATACAGTCGACGGA
CCCAGTCGCGAGATTCTACGGGATGCAGAAGGGCCAAGTGTGCAAGATCA
CCCGACCCAGCGAGACGGCAGGGCGATACGTCACGTACCGACTTTGTATT
TGAAAGGGCCAAGTGTGCAAGATCACCCGACCCAGCGAGACGGCAGGGCG
ATACGTCACGTACCGACTTTGTATTTGA
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