prot_P-lacustris_contig1215.1617.1 (polypeptide) Pleurocladia lacustris SAG_25_93

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-lacustris_contig1215.1617.1
Unique Nameprot_P-lacustris_contig1215.1617.1
Typepolypeptide
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Sequence length405
Homology
BLAST of mRNA_P-lacustris_contig1215.1617.1 vs. uniprot
Match: D7FNL4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FNL4_ECTSI)

HSP 1 Score: 602 bits (1553), Expect = 5.200e-208
Identity = 306/382 (80.10%), Postives = 331/382 (86.65%), Query Frame = 0
Query:    1 MQMRPSFQHIDEAKAQEIEMDLDDPDNSGAKAAERPQQVSFKKKESEKATAARKSSYAYKKSIEDAEPWVALEVYGQNDDRSLDEFSRMFVYGDDDDDAGVRRGTITKEFPPCERYLQGLDYMEEYDENGESFSAGGRGRSLDDSIDLVTAGMGSYSPVKIPTPPVQNLAGDAKVVGYLKLAHLVPFGMLLDVTNMSPDAVMEALSVEGRQQGLLLRGNWAARASDVWPRGPPHAADCLSVAQCLLHKYGAVSRPNLQRRFPELDPVTLREVLSHIAELDTVDRRWVPKVKDGITFGMEHPDLVELEEERWALQESSLKERLGEDVLAPPTCRTFEPFVGILAAATKAASTASALAARAPASRAMPSFGVLRPGGGTVKREV 382
            MQMRP FQHIDEAKAQEIEMDLDDPDN G K AE+PQQVSFKKKESE+ATAARKSSYAYKKSIEDAEPWVALEV+GQNDDRSLDEFSRMFV    DDDA   RGT TKEFPPCERYLQGLDYMEEYDENGESFSAGGRGRSL DSIDLVTAG G+YSPV +P  P   L GDAKVVGYLKLAHLVPF MLLDVTNMSPDAV++ALSVEGRQ+GLL+RGNWAA  +DVWPRGPPHAADCLSVAQCLLH+YGAVSRP+LQRRFPEL+PVTL+E+L  IAELDTVDRRWVPKVKDG+TFGMEHP++VELEEERW L ES LKERLG+D+LAPP+C TF  FV +L AA +A         RAP SRA+PSFGVLR G    K E+
Sbjct:  168 MQMRPCFQHIDEAKAQEIEMDLDDPDNGGTKEAEKPQQVSFKKKESERATAARKSSYAYKKSIEDAEPWVALEVHGQNDDRSLDEFSRMFV----DDDASANRGTTTKEFPPCERYLQGLDYMEEYDENGESFSAGGRGRSLADSIDLVTAGTGTYSPVNLPAAPAHQLGGDAKVVGYLKLAHLVPFSMLLDVTNMSPDAVLQALSVEGRQKGLLMRGNWAALPADVWPRGPPHAADCLSVAQCLLHRYGAVSRPDLQRRFPELEPVTLKELLLRIAELDTVDRRWVPKVKDGLTFGMEHPEIVELEEERWTLHESILKERLGDDILAPPSCPTFGTFVKVLEAAARAXXXXXXXXXRAPMSRAVPSFGVLRRGEVAAKEEI 545          
BLAST of mRNA_P-lacustris_contig1215.1617.1 vs. uniprot
Match: W7TNB1_9STRA (Dna-directed rna polymerase iii subunit rpc5 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TNB1_9STRA)

HSP 1 Score: 74.7 bits (182), Expect = 9.010e-11
Identity = 90/329 (27.36%), Postives = 139/329 (42.25%), Query Frame = 0
Query:   39 VSFKKKESEKATAARKSSYAYKKSIEDAEPWVALEVYGQNDDRSLDEFSRMFVYGDDDDDAGVR---RGTITKEFPPCERYLQGLDYMEEYDENGESFSAGGRGRSLDDSID--------LVTAGM--------GSYSPVKI-----------PTPP-----VQNLAGDAKVVGYLKLAHLVPFGMLLDVTN-----------MSPDAV-------MEALSVEGRQQ-GLLLRGNWAARASDVWPRGP--PHAADCLSVAQCLLHKYGAVSRPNLQRRFPELDPVTLREVLSHIAELDTVDRRWVPKVKDGITFGMEHPDLVELEEERW 311
            + +KK+ESEKA AAR++SYA+KK  E+ EPW  L V+  +      +  RMF   ++D    ++    GTI               Y++ Y       +A  RG  L  +ID         + AGM        G  + VK            P  P     + ++ G  +V   L  AH+V F  +L+++             +P+ V       + AL++E  ++  +L+RGNW  R S ++       HA D L +   LL +YG V+R          D  + R +LS IA LD   R WV    D I F    P++   ++  W
Sbjct:  225 IEYKKRESEKAAAARRTSYAFKKQQEEGEPWRELLVHPLSSQTGQTDLERMFCTREEDMGRKIKFQGGGTI---------------YLDLYRSQKSKAAARERGEGLSRTIDHQQQHSAAFLDAGMDAGDGVIDGDETAVKANLSSLAVGNRAPRDPSIGALIPHMQGAEQVATILARAHVVSFEQVLELSGGNGSWPPHGGATTPEGVDHATGSAVSALALERLKKCAVLVRGNWV-RKSILYGLSARLSHARDALLL---LLDRYGGVNRQQFGAAAGLSDEES-RGLLSPIATLDKAARMWVMVPPDDIIFLTAFPEVALQQQRLW 533          
BLAST of mRNA_P-lacustris_contig1215.1617.1 vs. uniprot
Match: K0R562_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0R562_THAOC)

HSP 1 Score: 73.6 bits (179), Expect = 1.870e-10
Identity = 89/357 (24.93%), Postives = 159/357 (44.54%), Query Frame = 0
Query:    1 MQMRPSFQHI-DEAKAQEIEMDLDDPDNSGAKAAERPQQVSFKKKESEKATAARKSSYAYKKSIEDAEPWVALEVYGQNDDRSLDEFSRMFVYGDDDDDAGVRRGTITKEFPPCER----YLQGLDYM-----EEYDENGESFSAGGRGRSLDDSI--------DLVTAGMGSYSPVKIPTPPVQNLAGDAKVVGYLKLAHLVPFGML---LDVTNMSPDAVMEALSVEGRQQGLLLRGNWAARASDV------WPRGPPHAADCLSVAQCLLHKYGAVSRPNLQRRFPELDPV----------TLREVLSHIAELDTVDRRWVPKVKDGITFGMEHPDLVELEEERWALQESSLKE 320
            +QMRPSF+H+ DE +        D+ DN  A   +RP  V F KKESE+A AA+++SYAYK S E++E W+ L+V+G     S +  + M      D +  ++   ++K    C      Y++ L+Y+      +Y EN   ++     +++ DS         D+    +   + V         LAG   V+       +VP+ +L      + +S + ++ ALS        ++RGN+A ++S          +      +   +   +L+ +G++ R  L + + +L             T+  +L  +A     D  WV KV+D   F  + P + ++  E WA + + L E
Sbjct:  158 LQMRPSFRHLHDEEEDDPNHAAADEADNQSA-PKQRP--VMFNKKESERAMAAKRNSYAYKCSNEESEEWIELDVHGSQGTWSQERKALMKRASCPDREKQLQ---LSKRGANCINGDGGYVKSLNYLASSGGSDYVENLSDWNPAAVEQAVPDSSQNDDEDGNDVEMEDVEPTAQVGKTEQATAELAGKLAVLLQTGNGTMVPYRVLRSRFHPSKVSDEMLVNALSA----CACIVRGNFAMKSSLAKFLKVGGVKQRKIMCELRDLILIILNVHGSIQRERLTKAYVKLTETNSDYDVMNVDTITFILKTVARKG--DNCWVGKVQDDDEFAGQFPSVAQMHAEYWAKKRTKLDE 502          
BLAST of mRNA_P-lacustris_contig1215.1617.1 vs. uniprot
Match: A0A7S0PIR7_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus aporus TaxID=1398097 RepID=A0A7S0PIR7_9STRA)

HSP 1 Score: 63.9 bits (154), Expect = 9.090e-8
Identity = 38/75 (50.67%), Postives = 54/75 (72.00%), Query Frame = 0
Query:    1 MQMRPSFQHIDEAKAQEIEMDLDDPDNSGAKAAERPQQVSFKKKESEKATAARKSSYAYKKSIEDAEPWVALEVY 75
            +Q+RPSF+H +E   Q+   D++D   +G  AA +P  + FKKKESEKA AARKSSYAYK+  E++E W+ L+V+
Sbjct:  128 IQVRPSFKHFNEQFVQDSS-DMNDNAVAGDSAAPKP--LMFKKKESEKAIAARKSSYAYKRKSEESEEWIELDVH 199          
BLAST of mRNA_P-lacustris_contig1215.1617.1 vs. uniprot
Match: A0A7S1TWY4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TWY4_9STRA)

HSP 1 Score: 62.0 bits (149), Expect = 5.570e-7
Identity = 47/134 (35.07%), Postives = 75/134 (55.97%), Query Frame = 0
Query:    2 QMRPSFQHIDEAKAQEIEMDLDDPDN-SGAKAAERP-----QQVSFKKKESEKATAARKSSYAYKKSIEDAEPWVALEVYGQNDDRSLDEFSRMFVYGDDDDDAGVRRGTITKEF--PPCER---YLQGLDYME 124
            Q+RPSF H+ + +  ++E+D DD     G KAA  P     Q+V + KKESE+A A  + S+A+ ++  +AEPWV LEV G + D + + F +++   +++D AG        E   P  ++   YL  L YM+
Sbjct:  115 QLRPSFAHV-KNRQDDMELDTDDEXXXEGNKAAAEPAKPALQEVQYVKKESERAMAQHRRSFAHHRAQLEAEPWVPLEVSGPSSDVAEELFPQLYAPFNEEDAAGGEAAANDAEMLLPSRDKALAYLDSLQYMD 247          
BLAST of mRNA_P-lacustris_contig1215.1617.1 vs. uniprot
Match: A0A7S0KZL8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Asterionellopsis glacialis TaxID=33640 RepID=A0A7S0KZL8_9STRA)

HSP 1 Score: 60.1 bits (144), Expect = 2.240e-6
Identity = 40/84 (47.62%), Postives = 49/84 (58.33%), Query Frame = 0
Query:    2 QMRPSFQHIDEAKAQEIEMDLDDPDNSGAKAAERP----------QQVSFKKKESEKATAARKSSYAYKKSIEDAEPWVALEVY 75
            QMRPSF HIDEA      M  DD     A AA             + + F+KKESE+A  AR++SYAYKKS+EDAE W+ L V+
Sbjct:  154 QMRPSFSHIDEAM-----MQTDDQMQKDADAAAEXXXXXXXXXXXKSIMFQKKESERAALARQNSYAYKKSLEDAEEWLPLTVH 232          
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig1215.1617.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D7FNL4_ECTSI5.200e-20880.10Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
W7TNB1_9STRA9.010e-1127.36Dna-directed rna polymerase iii subunit rpc5 n=2 T... [more]
K0R562_THAOC1.870e-1024.93Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]
A0A7S0PIR7_9STRA9.090e-850.67Hypothetical protein n=1 Tax=Leptocylindrus aporus... [more]
A0A7S1TWY4_9STRA5.570e-735.07Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A7S0KZL8_9STRA2.240e-647.62Hypothetical protein (Fragment) n=1 Tax=Asterionel... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006886DNA-directed RNA polymerase III subunit Rpc5PFAMPF04801Sin_Ncoord: 1..319
e-value: 2.4E-54
score: 185.2
IPR006886DNA-directed RNA polymerase III subunit Rpc5PANTHERPTHR12069DNA-DIRECTED RNA POLYMERASES III 80 KDA POLYPEPTIDE RNA POLYMERASE III SUBUNIT 5coord: 1..307

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig1215contigP-lacustris_contig1215:7096..12647 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig1215.1617.1mRNA_P-lacustris_contig1215.1617.1Pleurocladia lacustris SAG_25_93mRNAP-lacustris_contig1215 2138..14090 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-lacustris_contig1215.1617.1 ID=prot_P-lacustris_contig1215.1617.1|Name=mRNA_P-lacustris_contig1215.1617.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=405bp
MQMRPSFQHIDEAKAQEIEMDLDDPDNSGAKAAERPQQVSFKKKESEKAT
AARKSSYAYKKSIEDAEPWVALEVYGQNDDRSLDEFSRMFVYGDDDDDAG
VRRGTITKEFPPCERYLQGLDYMEEYDENGESFSAGGRGRSLDDSIDLVT
AGMGSYSPVKIPTPPVQNLAGDAKVVGYLKLAHLVPFGMLLDVTNMSPDA
VMEALSVEGRQQGLLLRGNWAARASDVWPRGPPHAADCLSVAQCLLHKYG
AVSRPNLQRRFPELDPVTLREVLSHIAELDTVDRRWVPKVKDGITFGMEH
PDLVELEEERWALQESSLKERLGEDVLAPPTCRTFEPFVGILAAATKAAS
TASALAARAPASRAMPSFGVLRPGGGTVKREVAGAGAGASGGAGWGLNTR
RPSP*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006886RNA_pol_III_Rpc5