prot_P-lacustris_contig1159.1218.1 (polypeptide) Pleurocladia lacustris SAG_25_93

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-lacustris_contig1159.1218.1
Unique Nameprot_P-lacustris_contig1159.1218.1
Typepolypeptide
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Sequence length112
Homology
BLAST of mRNA_P-lacustris_contig1159.1218.1 vs. uniprot
Match: D7FHU0_ECTSI (Cytochrome c oxidase subunit VIa n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FHU0_ECTSI)

HSP 1 Score: 145 bits (365), Expect = 6.140e-43
Identity = 64/75 (85.33%), Postives = 68/75 (90.67%), Query Frame = 0
Query:   37 AEEMVKWKKMSAGMSVLSVAVAALVLATDEHHHRDEDAPIPSYMKIRNKPHPWNCADCTLLDAHCFAKCKEERAG 111
            AEEM KWKKM+AGM VLS+AV  LVLAT+EHHHRDEDAPIPSYMKIRNKPHPWNCADCTLLD+ CFAKCK ER G
Sbjct:   33 AEEMAKWKKMTAGMGVLSLAVTTLVLATEEHHHRDEDAPIPSYMKIRNKPHPWNCADCTLLDSACFAKCKAEREG 107          
BLAST of mRNA_P-lacustris_contig1159.1218.1 vs. uniprot
Match: A0A7S2G097_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2G097_9STRA)

HSP 1 Score: 65.5 bits (158), Expect = 1.530e-11
Identity = 28/71 (39.44%), Postives = 44/71 (61.97%), Query Frame = 0
Query:   39 EMVKWKKMSAGMSVLSVAVAALVLATDEHHHRDEDAPIPSYMKIRNKPHPWNCADCTLLDAHCFAKCKEER 109
            +M  W K+S  +++  V+VA +V+   E  H   +AP  S+ KIR KP+PW C+DCTL D  C+ +C+  +
Sbjct:   36 DMNNWIKISV-VAIGGVSVAGVVIGYLESQHHHHEAPPRSFKKIRAKPYPWECSDCTLFDLECWKECRANK 105          
BLAST of mRNA_P-lacustris_contig1159.1218.1 vs. uniprot
Match: A0A5D6XZ58_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XZ58_9STRA)

HSP 1 Score: 62.0 bits (149), Expect = 2.400e-10
Identity = 27/65 (41.54%), Postives = 42/65 (64.62%), Query Frame = 0
Query:   38 EEMVKWKKMSAGMSVLSVAVAAL-VLATDEHHHRDEDAPIPSYMKIRNKPHPWNCADCTLLDAHC 101
            ++M++W ++S GM  L+  + A  V+A    H   E+AP  +Y+K+RNKP PW  + C LLD+HC
Sbjct:   11 DQMIRWTQISKGMIGLTTLLTAYNVVAHFGGHEHHEEAPSYAYLKLRNKPFPWEYSGCDLLDSHC 75          
BLAST of mRNA_P-lacustris_contig1159.1218.1 vs. uniprot
Match: A0A662YHV6_9STRA (Uncharacterized protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662YHV6_9STRA)

HSP 1 Score: 60.8 bits (146), Expect = 4.690e-10
Identity = 30/70 (42.86%), Postives = 39/70 (55.71%), Query Frame = 0
Query:   40 MVKWKKMSAGMSVLSVAVAALVLAT-----DEHHHRDEDAPIPSYMKIRNKPHPWNCADCTLLDAHCFAK 104
            M +W  +S GM  L   V A  + T      EH H +E+ P   Y+K+RNKP PW+ +DC LLD  C AK
Sbjct:    1 MHRWNTISKGMIAL---VGAFTVYTAMGHMGEHEHHEEEKPAYPYLKMRNKPFPWDASDCDLLDRACHAK 67          
BLAST of mRNA_P-lacustris_contig1159.1218.1 vs. uniprot
Match: A0A662YJ33_9STRA (Uncharacterized protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662YJ33_9STRA)

HSP 1 Score: 63.5 bits (153), Expect = 1.070e-9
Identity = 31/70 (44.29%), Postives = 41/70 (58.57%), Query Frame = 0
Query:   38 EEMVKWKKMSAGMSVLSVAVAALVLATD---EHHHRDEDAPIPSYMKIRNKPHPWNCADCTLLDAHCFAK 104
            E+M +W  +S GM  L V V  +  A     EH H +E+ P   Y+K+RNKP PW+ +DC LLD  C AK
Sbjct:  180 EQMHRWNTISKGMIAL-VGVFTVYTAMGHMGEHEHHEEEKPAYPYLKMRNKPFPWDASDCDLLDRACHAK 248          
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig1159.1218.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7FHU0_ECTSI6.140e-4385.33Cytochrome c oxidase subunit VIa n=2 Tax=Ectocarpu... [more]
A0A7S2G097_9STRA1.530e-1139.44Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A5D6XZ58_9STRA2.400e-1041.54Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
A0A662YHV6_9STRA4.690e-1042.86Uncharacterized protein n=1 Tax=Nothophytophthora ... [more]
A0A662YJ33_9STRA1.070e-944.29Uncharacterized protein n=1 Tax=Nothophytophthora ... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036418Cytochrome c oxidase, subunit VIa superfamilyGENE3D4.10.95.10coord: 30..98
e-value: 4.9E-7
score: 31.7
IPR036418Cytochrome c oxidase, subunit VIa superfamilySUPERFAMILY81411Mitochondrial cytochrome c oxidase subunit VIacoord: 37..96
NoneNo IPR availablePANTHERPTHR11504:SF0CYTOCHROME C OXIDASE SUBUNIT 6A, MITOCHONDRIALcoord: 36..107
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 64..111
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 46..63
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..45
IPR001349Cytochrome c oxidase, subunit VIaPANTHERPTHR11504CYTOCHROME C OXIDASE POLYPEPTIDE VIAcoord: 36..107

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig1159contigP-lacustris_contig1159:56931..57922 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig1159.1218.1mRNA_P-lacustris_contig1159.1218.1Pleurocladia lacustris SAG_25_93mRNAP-lacustris_contig1159 56556..58060 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-lacustris_contig1159.1218.1 ID=prot_P-lacustris_contig1159.1218.1|Name=mRNA_P-lacustris_contig1159.1218.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=112bp
MNDSNGIESSMQSRPLVFYAYKLYFTSLTNPRRACRAEEMVKWKKMSAGM
SVLSVAVAALVLATDEHHHRDEDAPIPSYMKIRNKPHPWNCADCTLLDAH
CFAKCKEERAG*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036418Cyt_c_oxidase_su6a_sf
IPR001349Cyt_c_oxidase_su6a