mRNA_P-lacustris_contig1159.1218.1 (mRNA) Pleurocladia lacustris SAG_25_93

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-lacustris_contig1159.1218.1
Unique NamemRNA_P-lacustris_contig1159.1218.1
TypemRNA
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Homology
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BLAST of mRNA_P-lacustris_contig1159.1218.1 vs. uniprot
Match: D7FHU0_ECTSI (Cytochrome c oxidase subunit VIa n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FHU0_ECTSI)

HSP 1 Score: 145 bits (365), Expect = 2.070e-40
Identity = 64/75 (85.33%), Postives = 68/75 (90.67%), Query Frame = 1 
Query:  247 AEEMVKWKKMSAGMSVLSVAVAALVLATDEHHHRDEDAPIPSYMKIRNKPHPWNCADCTLLDAHCFAKCKEERAG 471
            AEEM KWKKM+AGM VLS+AV  LVLAT+EHHHRDEDAPIPSYMKIRNKPHPWNCADCTLLD+ CFAKCK ER G
Sbjct:   33 AEEMAKWKKMTAGMGVLSLAVTTLVLATEEHHHRDEDAPIPSYMKIRNKPHPWNCADCTLLDSACFAKCKAEREG 107
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BLAST of mRNA_P-lacustris_contig1159.1218.1 vs. uniprot
Match: A0A7S2G097_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2G097_9STRA)

HSP 1 Score: 65.9 bits (159), Expect = 4.070e-10
Identity = 28/71 (39.44%), Postives = 44/71 (61.97%), Query Frame = 1 
Query:  253 EMVKWKKMSAGMSVLSVAVAALVLATDEHHHRDEDAPIPSYMKIRNKPHPWNCADCTLLDAHCFAKCKEER 465
            +M  W K+S  +++  V+VA +V+   E  H   +AP  S+ KIR KP+PW C+DCTL D  C+ +C+  +
Sbjct:   36 DMNNWIKISV-VAIGGVSVAGVVIGYLESQHHHHEAPPRSFKKIRAKPYPWECSDCTLFDLECWKECRANK 105
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BLAST of mRNA_P-lacustris_contig1159.1218.1 vs. uniprot
Match: A0A5D6XZ58_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XZ58_9STRA)

HSP 1 Score: 62.0 bits (149), Expect = 7.160e-9
Identity = 27/65 (41.54%), Postives = 42/65 (64.62%), Query Frame = 1 
Query:  250 EEMVKWKKMSAGMSVLSVAVAAL-VLATDEHHHRDEDAPIPSYMKIRNKPHPWNCADCTLLDAHC 441
            ++M++W ++S GM  L+  + A  V+A    H   E+AP  +Y+K+RNKP PW  + C LLD+HC
Sbjct:   11 DQMIRWTQISKGMIGLTTLLTAYNVVAHFGGHEHHEEAPSYAYLKLRNKPFPWEYSGCDLLDSHC 75
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BLAST of mRNA_P-lacustris_contig1159.1218.1 vs. uniprot
Match: A0A662YHV6_9STRA (Uncharacterized protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662YHV6_9STRA)

HSP 1 Score: 60.8 bits (146), Expect = 1.290e-8
Identity = 30/70 (42.86%), Postives = 39/70 (55.71%), Query Frame = 1 
Query:  256 MVKWKKMSAGMSVLSVAVAALVLAT-----DEHHHRDEDAPIPSYMKIRNKPHPWNCADCTLLDAHCFAK 450
            M +W  +S GM  L   V A  + T      EH H +E+ P   Y+K+RNKP PW+ +DC LLD  C AK
Sbjct:    1 MHRWNTISKGMIAL---VGAFTVYTAMGHMGEHEHHEEEKPAYPYLKMRNKPFPWDASDCDLLDRACHAK 67
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BLAST of mRNA_P-lacustris_contig1159.1218.1 vs. uniprot
Match: A0A662YJ33_9STRA (Uncharacterized protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662YJ33_9STRA)

HSP 1 Score: 63.5 bits (153), Expect = 3.950e-8
Identity = 31/70 (44.29%), Postives = 41/70 (58.57%), Query Frame = 1 
Query:  250 EEMVKWKKMSAGMSVLSVAVAALVLATD---EHHHRDEDAPIPSYMKIRNKPHPWNCADCTLLDAHCFAK 450
            E+M +W  +S GM  L V V  +  A     EH H +E+ P   Y+K+RNKP PW+ +DC LLD  C AK
Sbjct:  180 EQMHRWNTISKGMIAL-VGVFTVYTAMGHMGEHEHHEEEKPAYPYLKMRNKPFPWDASDCDLLDRACHAK 248
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig1159.1218.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7FHU0_ECTSI2.070e-4085.33Cytochrome c oxidase subunit VIa n=2 Tax=Ectocarpu... [more]
A0A7S2G097_9STRA4.070e-1039.44Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A5D6XZ58_9STRA7.160e-941.54Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
A0A662YHV6_9STRA1.290e-842.86Uncharacterized protein n=1 Tax=Nothophytophthora ... [more]
A0A662YJ33_9STRA3.950e-844.29Uncharacterized protein n=1 Tax=Nothophytophthora ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig1159contigP-lacustris_contig1159:56556..58060 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score144.8
Seed ortholog evalue2.4e-32
Seed eggNOG ortholog2880.D7FHU0
KEGG koko:K02266
KEGG TC3.D.4.11,3.D.4.8
KEGG Pathwayko00190,ko01100,ko04260,ko04714,ko04932,ko05010,ko05012,ko05016,map00190,map01100,map04260,map04714,map04932,map05010,map05012,map05016
KEGG ModuleM00154
Hectar predicted targeting categoryother localisation
EggNOG OGs2BY4U@1,2SBT1@2759
Ec32 ortholog descriptioncytochrome c oxidase subunit VIa
Ec32 orthologEc-07_006760.1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002
Exons2
Model size849
Cds size336
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig1159.1218.1prot_P-lacustris_contig1159.1218.1Pleurocladia lacustris SAG_25_93polypeptideP-lacustris_contig1159 56931..57922 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815467.297124-UTR-P-lacustris_contig1159:56555..569301622815467.297124-UTR-P-lacustris_contig1159:56555..56930Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1159 56556..56930 -
1693493556.414127-UTR-P-lacustris_contig1159:56555..569301693493556.414127-UTR-P-lacustris_contig1159:56555..56930Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1159 56556..56930 -
1622815467.3439093-UTR-P-lacustris_contig1159:57922..580601622815467.3439093-UTR-P-lacustris_contig1159:57922..58060Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1159 57923..58060 -
1693493556.4534523-UTR-P-lacustris_contig1159:57922..580601693493556.4534523-UTR-P-lacustris_contig1159:57922..58060Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1159 57923..58060 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815467.3151762-CDS-P-lacustris_contig1159:56930..570381622815467.3151762-CDS-P-lacustris_contig1159:56930..57038Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1159 56931..57038 -
1693493556.4267995-CDS-P-lacustris_contig1159:56930..570381693493556.4267995-CDS-P-lacustris_contig1159:56930..57038Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1159 56931..57038 -
1622815467.3298178-CDS-P-lacustris_contig1159:57694..579221622815467.3298178-CDS-P-lacustris_contig1159:57694..57922Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1159 57695..57922 -
1693493556.4427786-CDS-P-lacustris_contig1159:57694..579221693493556.4427786-CDS-P-lacustris_contig1159:57694..57922Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1159 57695..57922 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-lacustris_contig1159.1218.1

>prot_P-lacustris_contig1159.1218.1 ID=prot_P-lacustris_contig1159.1218.1|Name=mRNA_P-lacustris_contig1159.1218.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=112bp
MNDSNGIESSMQSRPLVFYAYKLYFTSLTNPRRACRAEEMVKWKKMSAGM
SVLSVAVAALVLATDEHHHRDEDAPIPSYMKIRNKPHPWNCADCTLLDAH
CFAKCKEERAG*
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mRNA from alignment at P-lacustris_contig1159:56556..58060-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-lacustris_contig1159.1218.1 ID=mRNA_P-lacustris_contig1159.1218.1|Name=mRNA_P-lacustris_contig1159.1218.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=1505bp|location=Sequence derived from alignment at P-lacustris_contig1159:56556..58060- (Pleurocladia lacustris SAG_25_93)
CAAACGCCACCGCCACTCGCGCGAAAGAACGCTCTCGTGTCAAAGTGCCT
TGGTTTAGGAGGAAGTAGGTTCCTTAAGAAGGCAGGTGCTCCTTTCGTGT
CCAAGGGCGGGGCGACTAAGGCACGCAGCAAGCAACAAATGAATGACTCG
AACGGAATCGAATCGTCGATGCAATCTCGCCCACTGGTGTTCTACGCGTA
CAAATTGTATTTCACAAGCCTCACAAACCCGCGACGTGCATGCCGAGCAG
AGGAGATGGTGAAGTGGAAAAAGATGTCGGCAGGCATGTCGGTGTTGAGC
GTGGCCGTGGCTGCACTGGTGCTGGCCACAGACGAGCACCACCACAGGGA
TGAAGACGCCCCCATCGTAAGAAAATAAAAAAACACTGGCTCGTTTTATG
GTATCCCGTTAATTCTGGACCAAACATTGTTTTTGAAACGTTTTGCTTGC
CAATTTGGTTTCGAAGGTGTTAAGGAGTCTCGTAACGTTCCCCGATGTTT
GCACATGGTGAGAATATTGGGAGAGAGTAAGGCACGACGACACGTCAAGG
GTAGCAGGGTACATTCACGTAGTTTTCCGTACACCACAGCATGAGGACGC
CAGACGCGTTGCTTGGTATGGTGCGAGGGGGGCATTCGTCTCAAGGGTTG
AGGATGGATCTCGTATCGAACGGTCGGTGTGCGACCGAAGCGATTTGGCG
TCCTTCTCGCGGAACGGAGGATCTCGTTTTTTTCTGGAATCCCGAGTTTG
AGTATTTCGTTGGTCCTCGTCGTGAAAGCAGTCAGACAACGCTAGAATCA
AAGATGGAAGTACCGTCTTCATCAGGTACACCACAATTCCGTTCACGGCG
CTAACTCCACCTTTCTTTTCAGTACTCTCCCACACACCATGTCTGATGCC
ACCGCCGTCGCCTCCGCTGACTTTTTATTCTTTTTTTTTTTTCTCGCCGT
CTTTGCTTTTTTTTTCGTGCGTTCCCTCCGTTGGACCTCCGTCCTATGTG
GCAACCTAAACCCCACCCCCAGCCGTCGTACATGAAGATCCGCAACAAGC
CGCACCCGTGGAACTGTGCGGACTGCACGCTTCTCGACGCGCATTGCTTC
GCAAAGTGCAAAGAGGAACGCGCCGGGTGAGCGTTCGGCGCCGTCATGGC
CACTCATGACTCATGGCGCAGGCAACGACGGGGAACACTTTGTTCGTGGA
CAGGAAAGGCTCTCGTAACGACGGCGATGATGGCGAAGCAAGAATAGAAG
CAGTAGGAGCGGTGACTTGCTGGTTAACTTGTGTCTTGAAACGAGGAAGC
GAGGCCGGGGCGGCCGAGTCACAGCCATTCTTGTCTGCAACTGAGGTGCT
CGTGTTTAGGTTTTATGTGCGAGTACACAATAGGTGCGTATGTTGCGCCC
TTTACGCAGCTGCTGTGTGAACGGGCGTGCGTCCAGTGCGAGCGCATGAC
AATCTCTGTTAATTGCTTCGGATGGGGGTGGGGGGTATAAGGCTGCGTTG
TCGAG
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Coding sequence (CDS) from alignment at P-lacustris_contig1159:56556..58060-

>mRNA_P-lacustris_contig1159.1218.1 ID=mRNA_P-lacustris_contig1159.1218.1|Name=mRNA_P-lacustris_contig1159.1218.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=672bp|location=Sequence derived from alignment at P-lacustris_contig1159:56556..58060- (Pleurocladia lacustris SAG_25_93)
ATGAATGACTCGAACGGAATCGAATCGTCGATGCAATCTCGCCCACTGGT
GTTCTACGCGTACAAATTGTATTTCACAAGCCTCACAAACCCGCGACGTG
CATGCCGAGCAGAGGAGATGGTGAAGTGGAAAAAGATGTCGGCAGGCATG
TCGGTGTTGAGCGTGGCCGTGGCTGCACTGGTGCTGGCCACAGACGAGCA
CCACCACAGGGATGAAGACGCCCCCATCATGAATGACTCGAACGGAATCG
AATCGTCGATGCAATCTCGCCCACTGGTGTTCTACGCGTACAAATTGTAT
TTCACAAGCCTCACAAACCCGCGACGTGCATGCCGAGCAGAGGAGATGGT
GAAGTGGAAAAAGATGTCGGCAGGCATGTCGGTGTTGAGCGTGGCCGTGG
CTGCACTGGTGCTGGCCACAGACGAGCACCACCACAGGGATGAAGACGCC
CCCATCCCGTCGTACATGAAGATCCGCAACAAGCCGCACCCGTGGAACTG
TGCGGACTGCACGCTTCTCGACGCGCATTGCTTCGCAAAGTGCAAAGAGG
AACGCGCCGGGTGACCGTCGTACATGAAGATCCGCAACAAGCCGCACCCG
TGGAACTGTGCGGACTGCACGCTTCTCGACGCGCATTGCTTCGCAAAGTG
CAAAGAGGAACGCGCCGGGTGA
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