prot_P-lacustris_contig11.825.1 (polypeptide) Pleurocladia lacustris SAG_25_93

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-lacustris_contig11.825.1
Unique Nameprot_P-lacustris_contig11.825.1
Typepolypeptide
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Sequence length274
Homology
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BLAST of mRNA_P-lacustris_contig11.825.1 vs. uniprot
Match: A0A6H5LKX2_9PHAE (DUF4149 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LKX2_9PHAE)

HSP 1 Score: 334 bits (856), Expect = 1.270e-112
Identity = 193/263 (73.38%), Postives = 217/263 (82.51%), Query Frame = 0 
Query:   11 VLVGGAQAFIAPALVPRATTGARVKSPLEHSGMFVAQVSTGVSGSAKARSIAPMGVKRSAVVTMTSYKGPSKSVIANVGALSFAAGCSAVASAVAEISPHAAAFVQLVCLSIWLGMSVYATFVWPIITGLNMRDSSEFASLLGKLGPSYLQLSAAMIMSLGTSSLVIGHANEVQLVILGIALSITLYNSIVLEPSAVEALEEEQEVERRVRGSKKGEVVPQEDLRKMDAVLANFVGAEVLLDFLCILCAVCYAWDLASSITIA 273
            VL+G    FIAPA +P AT GARVK P+  S    A  +T ++G+A     AP+  +RS  +TMT+ K P ++VIAN   L+FAAGCSAVASAVAEISPHAAAFVQLVCLSIWLGMSVYATF+WP+ITGLNMRDSSEFASLLGKLGPSYLQLS AMIMSLGTSSLVIGHAN  QLVILGIAL ITLYN+IVLEPSAVEALEEEQ +E ++RG  K ++  QEDL KM+A LANF+GAEVLLDFLCILCAVCYAWDLASSIT A
Sbjct:   12 VLLGIVDGFIAPAFIPPATAGARVKLPVASS----APTAT-IAGAAPR---APLVDRRSRALTMTANKAPDQTVIANAVPLTFAAGCSAVASAVAEISPHAAAFVQLVCLSIWLGMSVYATFIWPVITGLNMRDSSEFASLLGKLGPSYLQLSVAMIMSLGTSSLVIGHANTTQLVILGIALGITLYNAIVLEPSAVEALEEEQAIEIKLRGPNKQKIAAQEDLPKMNANLANFLGAEVLLDFLCILCAVCYAWDLASSITFA 266
[Close]
BLAST of mRNA_P-lacustris_contig11.825.1 vs. uniprot
Match: D8LR36_ECTSI (DUF4149 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LR36_ECTSI)

HSP 1 Score: 259 bits (663), Expect = 3.600e-84
Identity = 148/204 (72.55%), Postives = 166/204 (81.37%), Query Frame = 0 
Query:   11 VLVGGAQAFIAPALVPRATTGARVKSPLEHSGMFVAQVSTGVSGSAKARSIAPMGVKRSAVVTMTSYKGPSKSVIANVGALSFAAGCSAVASAVAEISPHAAAFVQLVCLSIWLGMSVYATFVWPIITGLNMRDSSEFASLLGKLGPSYLQLSAAMIMSLGTSSLVIGHANEVQLVILGIALSITLYNSIVLEPSAVEALEEEQ 214
            VL+G    FIAPA +P AT GARVK P+  SG         ++G+A+    AP   +RS+ +TMT+ K P ++ IAN   L+FAAGCSAVASAVAEISPHAAAFVQLVCLSIWLGMSVYATF+WP+ITGLNMRDSSEFASLLGKLGPSYLQLS AMIMSLGTSSLVIGHAN  QLVILGIAL ITLYN+IVLEPSA+EALEEEQ
Sbjct:   12 VLLGIVDGFIAPAFIPPATAGARVKLPVASSGT--------IAGAARR---APFVARRSSALTMTANKAPDRTAIANAAPLTFAAGCSAVASAVAEISPHAAAFVQLVCLSIWLGMSVYATFIWPVITGLNMRDSSEFASLLGKLGPSYLQLSVAMIMSLGTSSLVIGHANTTQLVILGIALGITLYNAIVLEPSAIEALEEEQ 204
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig11.825.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5LKX2_9PHAE1.270e-11273.38DUF4149 domain-containing protein n=1 Tax=Ectocarp... [more]
D8LR36_ECTSI3.600e-8472.55DUF4149 domain-containing protein n=1 Tax=Ectocarp... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR025423Domain of unknown function DUF4149PFAMPF13664DUF4149coord: 119..212
e-value: 6.7E-8
score: 32.8
NoneNo IPR availablePANTHERPTHR23241:SF102LD23009Pcoord: 92..271
NoneNo IPR availablePANTHERPTHR23241LATE EMBRYOGENESIS ABUNDANT PLANTS LEA-RELATEDcoord: 92..271
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 106..116
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 139..157
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 117..138
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 158..178
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 203..239
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 84..105
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 14..18
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 179..184
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 265..273
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 19..83
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 240..264
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..5
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..18
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 185..202
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 6..13
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..18
score: 0.915
NoneNo IPR availableTMHMMTMhelixcoord: 7..29
NoneNo IPR availableTMHMMTMhelixcoord: 117..139
NoneNo IPR availableTMHMMTMhelixcoord: 159..178
NoneNo IPR availableTMHMMTMhelixcoord: 83..105
NoneNo IPR availableTMHMMTMhelixcoord: 185..202
NoneNo IPR availableTMHMMTMhelixcoord: 244..266

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig11contigP-lacustris_contig11:370532..375390 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig11.825.1mRNA_P-lacustris_contig11.825.1Pleurocladia lacustris SAG_25_93mRNAP-lacustris_contig11 369388..375559 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-lacustris_contig11.825.1 ID=prot_P-lacustris_contig11.825.1|Name=mRNA_P-lacustris_contig11.825.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=274bp
MIFRMSLLLVVLVGGAQAFIAPALVPRATTGARVKSPLEHSGMFVAQVST
GVSGSAKARSIAPMGVKRSAVVTMTSYKGPSKSVIANVGALSFAAGCSAV
ASAVAEISPHAAAFVQLVCLSIWLGMSVYATFVWPIITGLNMRDSSEFAS
LLGKLGPSYLQLSAAMIMSLGTSSLVIGHANEVQLVILGIALSITLYNSI
VLEPSAVEALEEEQEVERRVRGSKKGEVVPQEDLRKMDAVLANFVGAEVL
LDFLCILCAVCYAWDLASSITIA*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR025423DUF4149