mRNA_P-lacustris_contig11.825.1 (mRNA) Pleurocladia lacustris SAG_25_93
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Overview
Homology
BLAST of mRNA_P-lacustris_contig11.825.1 vs. uniprot
Match: A0A6H5LKX2_9PHAE (DUF4149 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LKX2_9PHAE) HSP 1 Score: 335 bits (858), Expect = 5.700e-107 Identity = 193/263 (73.38%), Postives = 217/263 (82.51%), Query Frame = 2
Query: 200 VLVGGAQAFIAPALVPRATTGARVKSPLEHSGMFVAQVSTGVSGSAKARSIAPMGVKRSAVVTMTSYKGPSKSVIANVGALSFAAGCSAVASAVAEISPHAAAFVQLVCLSIWLGMSVYATFVWPIITGLNMRDSSEFASLLGKLGPSYLQLSAAMIMSLGTSSLVIGHANEVQLVILGIALSITLYNSIVLEPSAVEALEEEQEVERRVRGSKKGEVVPQEDLRKMDAVLANFVGAEVLLDFLCILCAVCYAWDLASSITIA 988
VL+G FIAPA +P AT GARVK P+ S A +T ++G+A AP+ +RS +TMT+ K P ++VIAN L+FAAGCSAVASAVAEISPHAAAFVQLVCLSIWLGMSVYATF+WP+ITGLNMRDSSEFASLLGKLGPSYLQLS AMIMSLGTSSLVIGHAN QLVILGIAL ITLYN+IVLEPSAVEALEEEQ +E ++RG K ++ QEDL KM+A LANF+GAEVLLDFLCILCAVCYAWDLASSIT A
Sbjct: 12 VLLGIVDGFIAPAFIPPATAGARVKLPVASS----APTAT-IAGAAPR---APLVDRRSRALTMTANKAPDQTVIANAVPLTFAAGCSAVASAVAEISPHAAAFVQLVCLSIWLGMSVYATFIWPVITGLNMRDSSEFASLLGKLGPSYLQLSVAMIMSLGTSSLVIGHANTTQLVILGIALGITLYNAIVLEPSAVEALEEEQAIEIKLRGPNKQKIAAQEDLPKMNANLANFLGAEVLLDFLCILCAVCYAWDLASSITFA 266
BLAST of mRNA_P-lacustris_contig11.825.1 vs. uniprot
Match: D8LR36_ECTSI (DUF4149 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LR36_ECTSI) HSP 1 Score: 260 bits (664), Expect = 4.970e-79 Identity = 148/204 (72.55%), Postives = 166/204 (81.37%), Query Frame = 2
Query: 200 VLVGGAQAFIAPALVPRATTGARVKSPLEHSGMFVAQVSTGVSGSAKARSIAPMGVKRSAVVTMTSYKGPSKSVIANVGALSFAAGCSAVASAVAEISPHAAAFVQLVCLSIWLGMSVYATFVWPIITGLNMRDSSEFASLLGKLGPSYLQLSAAMIMSLGTSSLVIGHANEVQLVILGIALSITLYNSIVLEPSAVEALEEEQ 811
VL+G FIAPA +P AT GARVK P+ SG ++G+A+ AP +RS+ +TMT+ K P ++ IAN L+FAAGCSAVASAVAEISPHAAAFVQLVCLSIWLGMSVYATF+WP+ITGLNMRDSSEFASLLGKLGPSYLQLS AMIMSLGTSSLVIGHAN QLVILGIAL ITLYN+IVLEPSA+EALEEEQ
Sbjct: 12 VLLGIVDGFIAPAFIPPATAGARVKLPVASSGT--------IAGAARR---APFVARRSSALTMTANKAPDRTAIANAAPLTFAAGCSAVASAVAEISPHAAAFVQLVCLSIWLGMSVYATFIWPVITGLNMRDSSEFASLLGKLGPSYLQLSVAMIMSLGTSSLVIGHANTTQLVILGIALGITLYNAIVLEPSAIEALEEEQ 204 The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig11.825.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-lacustris_contig11.825.1 >prot_P-lacustris_contig11.825.1 ID=prot_P-lacustris_contig11.825.1|Name=mRNA_P-lacustris_contig11.825.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=274bp MIFRMSLLLVVLVGGAQAFIAPALVPRATTGARVKSPLEHSGMFVAQVSTback to top mRNA from alignment at P-lacustris_contig11:369388..375559- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-lacustris_contig11.825.1 ID=mRNA_P-lacustris_contig11.825.1|Name=mRNA_P-lacustris_contig11.825.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=6172bp|location=Sequence derived from alignment at P-lacustris_contig11:369388..375559- (Pleurocladia lacustris SAG_25_93)back to top Coding sequence (CDS) from alignment at P-lacustris_contig11:369388..375559- >mRNA_P-lacustris_contig11.825.1 ID=mRNA_P-lacustris_contig11.825.1|Name=mRNA_P-lacustris_contig11.825.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=1644bp|location=Sequence derived from alignment at P-lacustris_contig11:369388..375559- (Pleurocladia lacustris SAG_25_93)back to top |