prot_P-lacustris_contig1088.724.1 (polypeptide) Pleurocladia lacustris SAG_25_93

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-lacustris_contig1088.724.1
Unique Nameprot_P-lacustris_contig1088.724.1
Typepolypeptide
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Sequence length335
Homology
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BLAST of mRNA_P-lacustris_contig1088.724.1 vs. uniprot
Match: D7FK93_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FK93_ECTSI)

HSP 1 Score: 377 bits (968), Expect = 5.320e-127
Identity = 217/335 (64.78%), Postives = 250/335 (74.63%), Query Frame = 0 
Query:    1 MARCKGIPAASLVVLIAASCASGFLSGAPQGPPRG-GKTSQSDVAKSKVNEKLRTMVEETAVGPSPMIETISVGSPRDGLSIDSEQARAIALEAATSKTVPKDTTLEALHCLARSSELELSTGSSDPLPMESMGGLWRLCFVDGGFLQGIEVDKHGYVSRGQEVEIMFDTEDQKVVLGSRGLQSSLPMAVRGGLSYAQATQTVTGTFDKATVGIESLELRAFLIDDDALGFLTVSQDKDCYLLFHAQKSKAAAARLSNAAATVGSPLLDAVAEEAATAK------VAGQKLLDLKRGIELISWEELHEDKRVAVQETGRKTGSFNTFVRYLETEG 328
            MARC  + A  LVVL   + ASGFLSGAP GPPRG GK  Q DVAK+KV+ K RT  ++T VGPSP IETI+VGSP+ GL I SEQARAIALEAATSKTVPK TTLEALH LA SSELEL+TG S PLP+++M GLWRLCF +G FL GI+VDKHGYV+RGQ VEI+FD E +K+ L S GL SSLP A+ GGLSY   TQTVTGTF++   GIESL+LRAF+IDDDALGF TVS+DK   LLFHA+KSKAAAARLS A                          VAG+ LLDL   ++L S E++HEDKR+AVQETGR+TGSFNTF+RYLE EG
Sbjct:    1 MARCCKVVAVLLVVL---ATASGFLSGAPPGPPRGKGKAPQPDVAKNKVDGKPRTAADKTLVGPSPTIETITVGSPQHGLFIGSEQARAIALEAATSKTVPKATTLEALHSLAHSSELELTTGLSAPLPLQTMEGLWRLCFCEGDFLPGIDVDKHGYVARGQNVEILFDPEGEKITLASSGLGSSLPAAMEGGLSYTPETQTVTGTFEET--GIESLDLRAFMIDDDALGFHTVSEDKHGILLFHAEKSKAAAARLSKAVXXXXXXXXXXXXXXXXXXXXXXXXXVAGKDLLDLVLDVQLASEEDVHEDKRLAVQETGRETGSFNTFIRYLEKEG 330
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig1088.724.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FK93_ECTSI5.320e-12764.78Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 9..20
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 21..27
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..8
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 28..334
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..27
NoneNo IPR availablePROSITEPS51257PROKAR_LIPOPROTEINcoord: 1..20
score: 6.0
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..23
score: 0.729
NoneNo IPR availableTMHMMTMhelixcoord: 7..29

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig1088contigP-lacustris_contig1088:16091..21721 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig1088.724.1mRNA_P-lacustris_contig1088.724.1Pleurocladia lacustris SAG_25_93mRNAP-lacustris_contig1088 15996..22863 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-lacustris_contig1088.724.1 ID=prot_P-lacustris_contig1088.724.1|Name=mRNA_P-lacustris_contig1088.724.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=335bp
MARCKGIPAASLVVLIAASCASGFLSGAPQGPPRGGKTSQSDVAKSKVNE
KLRTMVEETAVGPSPMIETISVGSPRDGLSIDSEQARAIALEAATSKTVP
KDTTLEALHCLARSSELELSTGSSDPLPMESMGGLWRLCFVDGGFLQGIE
VDKHGYVSRGQEVEIMFDTEDQKVVLGSRGLQSSLPMAVRGGLSYAQATQ
TVTGTFDKATVGIESLELRAFLIDDDALGFLTVSQDKDCYLLFHAQKSKA
AAARLSNAAATVGSPLLDAVAEEAATAKVAGQKLLDLKRGIELISWEELH
EDKRVAVQETGRKTGSFNTFVRYLETEGASSTPR*
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