mRNA_P-lacustris_contig1088.724.1 (mRNA) Pleurocladia lacustris SAG_25_93
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Overview
Homology
BLAST of mRNA_P-lacustris_contig1088.724.1 vs. uniprot
Match: D7FK93_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FK93_ECTSI) HSP 1 Score: 376 bits (966), Expect = 2.030e-123 Identity = 217/335 (64.78%), Postives = 250/335 (74.63%), Query Frame = 3
Query: 96 MARCKGIPAASLVVLIAASCASGFLSGAPQGPPRG-GKTSQSDVAKSKVNEKLRTMVEETAVGPSPMIETISVGSPRDGLSIDSEQARAIALEAATSKTVPKDTTLEALHCLARSSELELSTGSSDPLPMESMGGLWRLCFVDGGFLQGIEVDKHGYVSRGQEVEIMFDTEDQKVVLGSRGLQSSLPMAVRGGLSYAQATQTVTGTFDKATVGIESLELRAFLIDDDALGFLTVSQDKDCYLLFHAQKSKAAAARLSNAAATVGSPLLDAVAEEAATAK------VAGQKLLDLKRGIELISWEELHEDKRVAVQETGRKTGSFNTFVRYLETEG 1079
MARC + A LVVL + ASGFLSGAP GPPRG GK Q DVAK+KV+ K RT ++T VGPSP IETI+VGSP+ GL I SEQARAIALEAATSKTVPK TTLEALH LA SSELEL+TG S PLP+++M GLWRLCF +G FL GI+VDKHGYV+RGQ VEI+FD E +K+ L S GL SSLP A+ GGLSY TQTVTGTF++ GIESL+LRAF+IDDDALGF TVS+DK LLFHA+KSKAAAARLS A VAG+ LLDL ++L S E++HEDKR+AVQETGR+TGSFNTF+RYLE EG
Sbjct: 1 MARCCKVVAVLLVVL---ATASGFLSGAPPGPPRGKGKAPQPDVAKNKVDGKPRTAADKTLVGPSPTIETITVGSPQHGLFIGSEQARAIALEAATSKTVPKATTLEALHSLAHSSELELTTGLSAPLPLQTMEGLWRLCFCEGDFLPGIDVDKHGYVARGQNVEILFDPEGEKITLASSGLGSSLPAAMEGGLSYTPETQTVTGTFEET--GIESLDLRAFMIDDDALGFHTVSEDKHGILLFHAEKSKAAAARLSKAVXXXXXXXXXXXXXXXXXXXXXXXXXVAGKDLLDLVLDVQLASEEDVHEDKRLAVQETGRETGSFNTFIRYLEKEG 330 The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig1088.724.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 1
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-lacustris_contig1088.724.1 >prot_P-lacustris_contig1088.724.1 ID=prot_P-lacustris_contig1088.724.1|Name=mRNA_P-lacustris_contig1088.724.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=335bp MARCKGIPAASLVVLIAASCASGFLSGAPQGPPRGGKTSQSDVAKSKVNEback to top mRNA from alignment at P-lacustris_contig1088:15996..22863+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-lacustris_contig1088.724.1 ID=mRNA_P-lacustris_contig1088.724.1|Name=mRNA_P-lacustris_contig1088.724.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=6868bp|location=Sequence derived from alignment at P-lacustris_contig1088:15996..22863+ (Pleurocladia lacustris SAG_25_93)back to top Coding sequence (CDS) from alignment at P-lacustris_contig1088:15996..22863+ >mRNA_P-lacustris_contig1088.724.1 ID=mRNA_P-lacustris_contig1088.724.1|Name=mRNA_P-lacustris_contig1088.724.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=2010bp|location=Sequence derived from alignment at P-lacustris_contig1088:15996..22863+ (Pleurocladia lacustris SAG_25_93)back to top |