prot_P-lacustris_contig1060.558.1 (polypeptide) Pleurocladia lacustris SAG_25_93

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-lacustris_contig1060.558.1
Unique Nameprot_P-lacustris_contig1060.558.1
Typepolypeptide
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Sequence length244
Homology
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BLAST of mRNA_P-lacustris_contig1060.558.1 vs. uniprot
Match: A0A6H5JGC6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGC6_9PHAE)

HSP 1 Score: 247 bits (630), Expect = 2.800e-76
Identity = 118/147 (80.27%), Postives = 135/147 (91.84%), Query Frame = 0 
Query:   15 RARYDDDDGPPAAVSFLLVVLGVAALCVAAVYLRASALHEREIEISAYEEIVSAWTSFRPTFSRLSINVTAHFGVPPANTSLPGLDPNPPPPGTLLALGVSKEADPIHDEEGDSGGLPNYVPFKLVRGVAPPPWRTARRYPPPDENS 161
            RARY+++ GPPAAVSFLL++LG+AALC+AAVYLRAS LH+REI+ISAYEE +S WT+FRPTF+RLSINVTAHFGV P NT+ PGLDPNPPPPGT LAL VS++ADPIHDEEGD+GGLPNYVP KL RGVAPPPWRTARR+PPP ENS
Sbjct:   33 RARYENE-GPPAAVSFLLIILGIAALCIAAVYLRASTLHDREIKISAYEETISEWTAFRPTFARLSINVTAHFGVAPVNTTSPGLDPNPPPPGTPLALAVSEDADPIHDEEGDAGGLPNYVPLKLERGVAPPPWRTARRFPPPQENS 178
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig1060.558.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JGC6_9PHAE2.800e-7680.27Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 48..244
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..25
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 26..47
NoneNo IPR availableTMHMMTMhelixcoord: 25..47

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig1060contigP-lacustris_contig1060:33174..39112 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig1060.558.1mRNA_P-lacustris_contig1060.558.1Pleurocladia lacustris SAG_25_93mRNAP-lacustris_contig1060 33174..39170 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-lacustris_contig1060.558.1 ID=prot_P-lacustris_contig1060.558.1|Name=mRNA_P-lacustris_contig1060.558.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=244bp
MAAPTALENRLVRARARYDDDDGPPAAVSFLLVVLGVAALCVAAVYLRAS
ALHEREIEISAYEEIVSAWTSFRPTFSRLSINVTAHFGVPPANTSLPGLD
PNPPPPGTLLALGVSKEADPIHDEEGDSGGLPNYVPFKLVRGVAPPPWRT
ARRYPPPDENSEEGSGDSSAADESEHGDGGGGDGGHDAGGAEGDPEGTPA
GAGGGGWRRWRRLNELGGSPREDAFLPPGGAAATAALPRPASPA
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