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Homology
BLAST of mRNA_P-lacustris_contig1060.558.1 vs. uniprot
Match: A0A6H5JGC6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGC6_9PHAE) HSP 1 Score: 246 bits (629), Expect = 7.890e-76 Identity = 118/147 (80.27%), Postives = 135/147 (91.84%), Query Frame = 2
Query: 101 RARYDDDDGPPAAVSFLLVVLGVAALCVAAVYLRASALHEREIEISAYEEIVSAWTSFRPTFSRLSINVTAHFGVPPANTSLPGLDPNPPPPGTLLALGVSKEADPIHDEEGDSGGLPNYVPFKLVRGVAPPPWRTARRYPPPDENS 541
RARY+++ GPPAAVSFLL++LG+AALC+AAVYLRAS LH+REI+ISAYEE +S WT+FRPTF+RLSINVTAHFGV P NT+ PGLDPNPPPPGT LAL VS++ADPIHDEEGD+GGLPNYVP KL RGVAPPPWRTARR+PPP ENS
Sbjct: 33 RARYENE-GPPAAVSFLLIILGIAALCIAAVYLRASTLHDREIKISAYEETISEWTAFRPTFARLSINVTAHFGVAPVNTTSPGLDPNPPPPGTPLALAVSEDADPIHDEEGDAGGLPNYVPLKLERGVAPPPWRTARRFPPPQENS 178
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Hectar predicted targeting category | signal anchor |
| Exons | 5 |
| Model size | 791 |
| Cds size | 732 |
| Stop | 0 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1622815331.4670293-CDS-P-lacustris_contig1060:33173..33487 | 1622815331.4670293-CDS-P-lacustris_contig1060:33173..33487 | Pleurocladia lacustris SAG_25_93 | CDS | P-lacustris_contig1060 33174..33487 - |
| 1693493481.4376428-CDS-P-lacustris_contig1060:33173..33487 | 1693493481.4376428-CDS-P-lacustris_contig1060:33173..33487 | Pleurocladia lacustris SAG_25_93 | CDS | P-lacustris_contig1060 33174..33487 - |
| 1622815331.4777896-CDS-P-lacustris_contig1060:35486..35724 | 1622815331.4777896-CDS-P-lacustris_contig1060:35486..35724 | Pleurocladia lacustris SAG_25_93 | CDS | P-lacustris_contig1060 35487..35724 - |
| 1693493481.4482694-CDS-P-lacustris_contig1060:35486..35724 | 1693493481.4482694-CDS-P-lacustris_contig1060:35486..35724 | Pleurocladia lacustris SAG_25_93 | CDS | P-lacustris_contig1060 35487..35724 - |
| 1622815331.4884243-CDS-P-lacustris_contig1060:36834..36935 | 1622815331.4884243-CDS-P-lacustris_contig1060:36834..36935 | Pleurocladia lacustris SAG_25_93 | CDS | P-lacustris_contig1060 36835..36935 - |
| 1693493481.4579566-CDS-P-lacustris_contig1060:36834..36935 | 1693493481.4579566-CDS-P-lacustris_contig1060:36834..36935 | Pleurocladia lacustris SAG_25_93 | CDS | P-lacustris_contig1060 36835..36935 - |
| 1622815331.500777-CDS-P-lacustris_contig1060:37544..37620 | 1622815331.500777-CDS-P-lacustris_contig1060:37544..37620 | Pleurocladia lacustris SAG_25_93 | CDS | P-lacustris_contig1060 37545..37620 - |
| 1693493481.467794-CDS-P-lacustris_contig1060:37544..37620 | 1693493481.467794-CDS-P-lacustris_contig1060:37544..37620 | Pleurocladia lacustris SAG_25_93 | CDS | P-lacustris_contig1060 37545..37620 - |
| 1622815331.5155585-CDS-P-lacustris_contig1060:39109..39112 | 1622815331.5155585-CDS-P-lacustris_contig1060:39109..39112 | Pleurocladia lacustris SAG_25_93 | CDS | P-lacustris_contig1060 39110..39112 - |
| 1693493481.485526-CDS-P-lacustris_contig1060:39109..39112 | 1693493481.485526-CDS-P-lacustris_contig1060:39109..39112 | Pleurocladia lacustris SAG_25_93 | CDS | P-lacustris_contig1060 39110..39112 - |
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1622815331.5250723-UTR-P-lacustris_contig1060:39112..39170 | 1622815331.5250723-UTR-P-lacustris_contig1060:39112..39170 | Pleurocladia lacustris SAG_25_93 | UTR | P-lacustris_contig1060 39113..39170 - |
| 1693493481.4985678-UTR-P-lacustris_contig1060:39112..39170 | 1693493481.4985678-UTR-P-lacustris_contig1060:39112..39170 | Pleurocladia lacustris SAG_25_93 | UTR | P-lacustris_contig1060 39113..39170 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-lacustris_contig1060.558.1 >prot_P-lacustris_contig1060.558.1 ID=prot_P-lacustris_contig1060.558.1|Name=mRNA_P-lacustris_contig1060.558.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=244bp
MAAPTALENRLVRARARYDDDDGPPAAVSFLLVVLGVAALCVAAVYLRAS ALHEREIEISAYEEIVSAWTSFRPTFSRLSINVTAHFGVPPANTSLPGLD PNPPPPGTLLALGVSKEADPIHDEEGDSGGLPNYVPFKLVRGVAPPPWRT ARRYPPPDENSEEGSGDSSAADESEHGDGGGGDGGHDAGGAEGDPEGTPA GAGGGGWRRWRRLNELGGSPREDAFLPPGGAAATAALPRPASPA back to topmRNA from alignment at P-lacustris_contig1060:33174..39170- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_P-lacustris_contig1060.558.1 ID=mRNA_P-lacustris_contig1060.558.1|Name=mRNA_P-lacustris_contig1060.558.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=5997bp|location=Sequence derived from alignment at P-lacustris_contig1060:33174..39170- (Pleurocladia lacustris SAG_25_93) CGGCACTCCCGCGCAGCAAGAGAGAGAACAGCGGGATCTGCCGCCGGCTA
GCTGAGCTATGGTGAGAGCGTAGGCGTGTTTTCGCAAAATTGACTTGTAA
TGTGATTGCAGCCTAAAAAATGATCGTGGCAACGGAGTTAACGCAACAAC
GGACACCGCGCCGCAACGCGCATCGCCAAGAAGCACGCAGCGCTCAAGAT
GGGGAGGCAGAGTCTCAAGCCTCGCTACTCGTCGGCCGAACTGCTTCGAT
ACAGATTGCCAGGCACTGTACCGACTTGAATTTCGATACAGATTGCCAGG
CACTGTTCCGACTTGTTCGGTTAATTGCTATGCAGTTCGTGCCGTATCTG
TCTCTCGCCTGTCGGCTAAATGGCCATTTAGACTATGTGCATCCCATGTG
GTTGTTCTTCATCGCCGGGCCTAGTGAGGACCTCCTTCGTATGCATATGA
ACCCCGTTGGCGTCAGTCTGGGTCCTTCCCGCTAGTTGGTAGTTGGTTTA
TAGGGCTACCTATTTAATCAAAGACCAAACCAAAGAGTAGTCAGCGCTGA
CTCTTTTGTTAAATAGGTAGCCCTGTAGTCTAAACCAATTAAAAGAGCTG
GCCCCGGGGCCACACCCCCAGAACACCTTTTCTCCGGGGAATAGCTTCCC
CTTGCCATACGCTGCTACTTGATAGGGTTTTTACGTGTTTTCCGACTCAG
ACATGCATGTCAATTTTCAATCTCCCAGTATTTTTTTGGGTAGAAAAAGA
CGTATTCACAATGGGAGGGGCTTGTTGCACCGCCTGCTGTTGTGTTGTTT
CCTCCCACCACTACCACCAGTAGTTGCTGCTCGCGACTACGACGCATTGT
CGAGCACCACACCCACGTGGACACCACCAAGTAGATGGAACGATCCGTGG
TGGATTACGTTTGTGTTGCTTCTCACGCGCGGTAATCTGCGCGGGGCGTA
TGCGAGCTTCATAGCGGTCGCTTTCTGGATGGGAGAGAGAGTGGTGTCTG
GCGCCGCCAAGACGCAAGGGAGGACGAAGAAGTGATTTTGTACTGCTGTA
ACGCAAGCCCCAACTCCCCGCCCGAAATATGGCTGAGTGAAGAGCGTTGA
GAAGGAGAGGGCCGGCGCAGCAGGCGGTGTCTGTCTCGAGTTAGAATAGG
AGTAGCAGCAGGGGCTGAATACGAGGGGGCTCGGACTGACATTCGCCGAC
AGGTCGTGGGTCGAGCCTCCGTTTGTCGTCTCTCGGCCCCCGTTTCGAGC
ATGGACTATGTGATGTATTGTAGAGTCCTCTTCCTCACGGAGATAATGTG
CTCGTCTTACCATTTCTACTTTATATTCGGGCGAGACCGGAGCATTTGCT
TTTACATTCTTTTTCCGTGTGTCCTTGTGTTTGTTCTCCCTTGTGGTCCC
CAACTGCAAAGGCGTTGCGTCTCGACGGGGATGTATGCGTGGTCCACGGC
CAAATGTCTATTAAGTGCGCACTATTGTAAGTGAGTCCCCCTCCCCTCAC
TTTCTCCCTGGACCCCATACCCCACTTGGGCAACCCCCCCGTAATACGAG
GCGGCGCCGACGGCGTTGGAAAACAGGCTGGTCAGGGCGAGGGCACGATA
CGACGACGACGATGGTCCTCCCGCTGGTGAGAGAGCGATTTCCTCTAGAC
GCGCACCTGTTTAGCCGTAAAATGCCGCCAAAGATGACGATGAGCTTGGT
AGCGGTAGTGGTTGCACGTTTGCTTTCACTCAAAGTACGGGCTAAGATTT
GCGCGCACCCTGCATGTGTAGGGTTGCCTACATTGTGCCCCCCAAGTATC
AGTGAGGTGAGACTGGTGACGTCCCGCTGTGTTTTTTCCTTTTTTTTTTT
TTTTATTGTTTTTTTTCCGTACAATTTCGTTTTTTGCCGTCCCATGTGTT
GCCGTTGCATGTGTCCTTTTGTTGTTGTGTTACACAATACTCGAAGTGTA
GAGTTTAAAAGCCGAAGAAGTCCCCAAACATTTGCTCAAGAAGACGACGA
GCTGTAGAGGCGAGCAAAGAGATGCCCCCAAAAAAAAAAATAGGGGAAAA
GAAAAGATTTAGCGGCACGAGTACAAGCACACCCATCACCATCACGCCTC
CTTAGATGAAGCCAGTGCTTTTTTTTCTCCCGGTACGCAATGGACAAGCT
CTCTCTCTCTCTCTCTCTCTCTCGCGCGCGCGCTACGTCTCCTTTGGCTT
ACCGTCGAAACCGTCCAATCCGCGAAAATTCAAAGCTGTATCGTTCCTGC
TCGTGGTTCTCGGCGTTGCGGCCTTGTGCGTCGCGGCGGTGTACCTGAGG
GCGTCCGCCCTTCACGAGAGAGAGATAGAGATATCGGTGAGCGTCTCGTC
ATCGCTTGTTGTTGTTGTCGTTGTTGTTGTTGTTGTTGTACCTGTGTTCC
ACGAAGCCTGTGTTCCACGAAGTCTAAGTCGAACGGAAAAAAACAAAACA
AGCGACCTTTAACTTCACGAGGGGCGTGATCTTCGGTGCGTTGTCACAAC
ACACTTTGACGCTCCCTTTGACGTGCCTAGTTTACTTCATTTTTCTCTTC
TTCCTCACGAAGACTGACTGCTCCTATCAGAAAACGGCGGTGACCCCACC
CCATCCTCTCGATTTCAATCAAAGCGATATAAAACGAACCCTGCCCACAA
AAAAACATGAACCACCTGCAGGGGGCTTCTCAGATGTCAGTCTTCCTTTG
ATGCTTGTGATTTTCCTTGAATGTCGCTTGCTTGTTCGGCTGATGTCAAC
CAGACATAACGGAATCCTCGGACAGGTTGCCTCCCCCATAGCCCGACCTT
CGCACACAGCTCGATCGCTCCTCAACGTAGAGGTTGCAAACACTGCATCC
ACGGAAAAAATGATAGGGATATTGTAGATTCGTTTCCTTTTTGGCGAGGA
GAAAAAAAGCGAAATCGACCACCGAGAAATCTGGAAGATATCATGATCTC
ACCATGAGATCTTTCCTGATATGCATATAGTCACCATTTTTTTCATTCGA
TTTTTTCGGGATCGACACCTTACCAAGTTTGTTGAGGAGCAAGACCGGCC
TATGTAAGGGCGGGTGCGATCTCTCCAATGAGGACCCCCACGTTTTTTTT
TGTGTCATGTCATGTCCGTGTCATATTTTATCATTTTACATGATACCCTG
CCATCATCTACATCATGTCATGGCGTATCAGTCAAAGTAGCATATTCATT
GTCGTGTATAGGGGGTGGTCGCCCTGCCCCGCAGGTCAGTTGGTTAACTG
CAAACCTTCTGCCGGCTAGGTCGTGGGTTCGTTCTGTATTATTCAATGTT
ATACTCTAGATAAAACAACGACAACTCACGCCGTCAATGTTTGTGCTTGT
CTCGAATTTTGTGTTTTTTTTTTCGTGAATTTTGTGTTTTTTTGTGTTTT
TTTCGTGTGTTCTTTCCTCTCGATTTTTTTTTTTTTTTTCCCGAAGGCTT
ACGAAGAAATCGTCAGCGCGTGGACCTCTTTCCGCCCGACATTCTCGCGG
CTCTCAATCAACGTCACCGCACACTTCGGGGTCCCTCCGGCGAACACTAG
CCTGCCGGGGTTGGATCCAAATCCTCCCCCCCCGGGAACACTGCTAGCCT
TGGGGGTCTCCAAAGAGGCAGATCCGATCCACGATGAGGAGGGAGATTCC
GGTGGGCTTCCGAACTATGTGCCCTTCAAGCTTGGTGAGCTCTTTTTGGG
TGGGGGATAGTGGGGACACGTCGTGGCTTGCTACCTTTCGTTGGAGGATT
TGATTCGTGGGTTTTTCGACAGAACGTGTCGTGTATTGCGGGTCTCCCCC
TCTCCTCCATCTCCCCCGAGGCGTTTTTTTTTTCAGCAAGGGATACTTGT
TGGGTTAGGGTTAAACATGGAGTAAAGAATAAAGAATAAAGAACTGATCG
CGGGGGAGGGGGAACTGATCGCAGGGGAGGGGGCTTTGCGTGCGAGAGAA
GTCTCCGCCTCCCGGAGGGCGCTCGTTAATTGTTACTCAGTTGTGTGTGT
GTGTGTGTGTGTTTGTGTTTTCTTTTTTTCTTTATCTTTCCTTTCGTTTC
TTTCCTTAGGGCCCCCCGTATTAACGAAGTTTCCAAAATTAAATTGGGAG
TTGAAATCGAGTTGTGATTGGCCCAGGAGCCCTCCAGGAGGCGTGAACGT
TATGATCATGGAACCACACATTTTGATTTTAATTCTAAGAAAAACAGTCC
CGAAAGAGTTTTTTTCTTGGAATTAAAATTAAAGTCAAACGCCTACCACT
TGTGTGAAACCTGGGGACCCGGTCTCGACACCTCAAGCACTCTGCGGGCC
CCCAGGAAGCCCAAAATCGCGAGAACCAGGCCCGACACGCCTCCTTATTT
TAATTTTGATTTTAATTTTGGAAACTTCGTTAATACGGGCACTTACGAAA
CAAATCAAATCCGTCTCTCTGTCTGTGGATACGGCGTCCAAGACAACTGA
ATTTTTTTTTTTGTTCACCTGTTCGGCCGGATAGCAAATAGTCCGCGCGT
CCATCCAAATCAGGCAGCAGCGTGTCGCTAATTTATAAACCATTGTGTAG
TTTCGGCGGCGTCGTGTGTTTATCTGGGTTTATTTTTTATGGGGGCAAAA
GAAGGTGAAACCACCCTTTGACGACTGCTGACTTGCCTCCCCGCCCTCGT
GGCGGCGACTGCTCTCCTGCTACGATTGCCTGTCTCGTGTTTGCGCGTTT
GCAGTGCTTCGCGGGCTGTGTAGCAGGGTCCGTCGTGATGGCTAGGGACA
GACAGACGGGGCTCTGTGTAAGGCATTGCCTGGTACCCCAGTCGTTGGCG
ACGCCAAGGCGTTGTAGAGACTTTTTTTTGTTTTCGCTTTGTGGAGCAGC
AGGCCCCGAATTTTGAACGCATTTATTGTCCGGCGCCCCCGGCAGGCGCC
GCCGCTTTCTTCCTCGCGCGCCGCACCGTGGCTGGACGATGTCCGGGTAT
ACTCCCTTCGCAACTGTCGCAAACATGCCACACGCCACTGGCTGGCCTAC
ACAGCAGTTGTCGTCCATTTTTTTTTTTTTTTTTTGCTCTTTCTTTTCGT
CCCATCTATTCTGTATTCTGGGCGCTATGCCGTTTTTACACCTTTGGGTG
ATTGTAGGGTTAGGAACCAGCCGGGGTCACACAGAAGGATTCGTCTCTCT
GAGGCCCCCGCCCGCCCTCCTGCGGTACGTGCCTTAATATTTATCGCGAT
GGTTCAGCTGTCCCTTTCCCTCGTCGAAATTAGTCGAATTTTGGATATTA
TATATACGAATTAATCACTTTCCACTGTAAAGTTGCAAGAAAAAACACCC
GCAGTGGGAATTGAACTCCAGACTTGCCGCTAAGTTGGTAACCACTAGAC
CACCGGGGCAGGGTATACTGCAACTGATAAAACGCCTCAAAATTTGTTTA
CTCATCCAGCCTCCCAACTTTTGGAAAGCGCCAAGCATGCGAAATCCCCT
ACCTCCTATATACTCGGAGTACGTCTAAAAATATATTTCCCCAAGATCAA
ACAAAGATACATGGTTGCTTCGTTGTTCTGCCTTGCTCCCTCTACCTCCA
CCCACCCTCCAAGAAAATAAATAAATAATGATAATGTCACCAACCTGCTC
GAAAACTTTTTTCAAGTGTCGCCGCCGATATCCTGCCGCGTGCGTTTACG
TGTGTGCACGCATGCGTCCTGGGCCCCGTGCAGTTAGGGGCGTGGCCCCA
CCTCCGTGGCGGACCGCCCGCCGTTACCCCCCCCCAGACGAAAATTCCGA
AGAAGGTTCCGGGGACAGTTCAGCGGCTGACGAAAGCGAGCACGGCGACG
GAGGCGGCGGTGACGGGGGGCATGATGCAGGCGGGGCGGAGGGAGACCCA
GAAGGCACTCCAGCCGGCGCCGGGGGTGGCGGGTGGCGGCGGTGGCGGAG
ACTAAACGAACTCGGTGGCAGCCCACGGGAAGATGCTTTCCTTCCACCGG
GTGGTGCGGCGGCAACGGCGGCGCTTCCGCGACCGGCTTCGCCAGCG back to topCoding sequence (CDS) from alignment at P-lacustris_contig1060:33174..39170- >mRNA_P-lacustris_contig1060.558.1 ID=mRNA_P-lacustris_contig1060.558.1|Name=mRNA_P-lacustris_contig1060.558.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=1464bp|location=Sequence derived from alignment at P-lacustris_contig1060:33174..39170- (Pleurocladia lacustris SAG_25_93) ATGATGGCGGCGCCGACGGCGTTGGAAAACAGGCTGGTCAGGGCGAGGGC ACGATACGACGACGACGATGGTCCTCCCGCTGGCGGCGCCGACGGCGTTG GAAAACAGGCTGGTCAGGGCGAGGGCACGATACGACGACGACGATGGTCC TCCCGCTGCTGTATCGTTCCTGCTCGTGGTTCTCGGCGTTGCGGCCTTGT GCGTCGCGGCGGTGTACCTGAGGGCGTCCGCCCTTCACGAGAGAGAGATA GAGATATCGCTGTATCGTTCCTGCTCGTGGTTCTCGGCGTTGCGGCCTTG TGCGTCGCGGCGGTGTACCTGAGGGCGTCCGCCCTTCACGAGAGAGAGAT AGAGATATCGGCTTACGAAGAAATCGTCAGCGCGTGGACCTCTTTCCGCC CGACATTCTCGCGGCTCTCAATCAACGTCACCGCACACTTCGGGGTCCCT CCGGCGAACACTAGCCTGCCGGGGTTGGATCCAAATCCTCCCCCCCCGGG AACACTGCTAGCCTTGGGGGTCTCCAAAGAGGCAGATCCGATCCACGATG AGGAGGGAGATTCCGGTGGGCTTCCGAACTATGTGCCCTTCAAGCTTGGC TTACGAAGAAATCGTCAGCGCGTGGACCTCTTTCCGCCCGACATTCTCGC GGCTCTCAATCAACGTCACCGCACACTTCGGGGTCCCTCCGGCGAACACT AGCCTGCCGGGGTTGGATCCAAATCCTCCCCCCCCGGGAACACTGCTAGC CTTGGGGGTCTCCAAAGAGGCAGATCCGATCCACGATGAGGAGGGAGATT CCGGTGGGCTTCCGAACTATGTGCCCTTCAAGCTTGTTAGGGGCGTGGCC CCACCTCCGTGGCGGACCGCCCGCCGTTACCCCCCCCCAGACGAAAATTC CGAAGAAGGTTCCGGGGACAGTTCAGCGGCTGACGAAAGCGAGCACGGCG ACGGAGGCGGCGGTGACGGGGGGCATGATGCAGGCGGGGCGGAGGGAGAC CCAGAAGGCACTCCAGCCGGCGCCGGGGGTGGCGGGTGGCGGCGGTGGCG GAGACTAAACGAACTCGGTGGCAGCCCACGGGAAGATGCTTTCCTTCCAC CGGGTGGTGCGGCGGCAACGGCGGCGCTTCCGCGACCGGCTTCGCCAGCG TTAGGGGCGTGGCCCCACCTCCGTGGCGGACCGCCCGCCGTTACCCCCCC CCAGACGAAAATTCCGAAGAAGGTTCCGGGGACAGTTCAGCGGCTGACGA AAGCGAGCACGGCGACGGAGGCGGCGGTGACGGGGGGCATGATGCAGGCG GGGCGGAGGGAGACCCAGAAGGCACTCCAGCCGGCGCCGGGGGTGGCGGG TGGCGGCGGTGGCGGAGACTAAACGAACTCGGTGGCAGCCCACGGGAAGA TGCTTTCCTTCCACCGGGTGGTGCGGCGGCAACGGCGGCGCTTCCGCGAC CGGCTTCGCCAGCG back to top
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