mRNA_P-lacustris_contig1060.558.1 (mRNA) Pleurocladia lacustris SAG_25_93

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-lacustris_contig1060.558.1
Unique NamemRNA_P-lacustris_contig1060.558.1
TypemRNA
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Homology
BLAST of mRNA_P-lacustris_contig1060.558.1 vs. uniprot
Match: A0A6H5JGC6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGC6_9PHAE)

HSP 1 Score: 246 bits (629), Expect = 7.890e-76
Identity = 118/147 (80.27%), Postives = 135/147 (91.84%), Query Frame = 2
Query:  101 RARYDDDDGPPAAVSFLLVVLGVAALCVAAVYLRASALHEREIEISAYEEIVSAWTSFRPTFSRLSINVTAHFGVPPANTSLPGLDPNPPPPGTLLALGVSKEADPIHDEEGDSGGLPNYVPFKLVRGVAPPPWRTARRYPPPDENS 541
            RARY+++ GPPAAVSFLL++LG+AALC+AAVYLRAS LH+REI+ISAYEE +S WT+FRPTF+RLSINVTAHFGV P NT+ PGLDPNPPPPGT LAL VS++ADPIHDEEGD+GGLPNYVP KL RGVAPPPWRTARR+PPP ENS
Sbjct:   33 RARYENE-GPPAAVSFLLIILGIAALCIAAVYLRASTLHDREIKISAYEETISEWTAFRPTFARLSINVTAHFGVAPVNTTSPGLDPNPPPPGTPLALAVSEDADPIHDEEGDAGGLPNYVPLKLERGVAPPPWRTARRFPPPQENS 178          
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig1060.558.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JGC6_9PHAE7.890e-7680.27Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig1060contigP-lacustris_contig1060:33174..39170 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons5
Model size791
Cds size732
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig1060.558.1prot_P-lacustris_contig1060.558.1Pleurocladia lacustris SAG_25_93polypeptideP-lacustris_contig1060 33174..39112 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815331.4670293-CDS-P-lacustris_contig1060:33173..334871622815331.4670293-CDS-P-lacustris_contig1060:33173..33487Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1060 33174..33487 -
1693493481.4376428-CDS-P-lacustris_contig1060:33173..334871693493481.4376428-CDS-P-lacustris_contig1060:33173..33487Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1060 33174..33487 -
1622815331.4777896-CDS-P-lacustris_contig1060:35486..357241622815331.4777896-CDS-P-lacustris_contig1060:35486..35724Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1060 35487..35724 -
1693493481.4482694-CDS-P-lacustris_contig1060:35486..357241693493481.4482694-CDS-P-lacustris_contig1060:35486..35724Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1060 35487..35724 -
1622815331.4884243-CDS-P-lacustris_contig1060:36834..369351622815331.4884243-CDS-P-lacustris_contig1060:36834..36935Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1060 36835..36935 -
1693493481.4579566-CDS-P-lacustris_contig1060:36834..369351693493481.4579566-CDS-P-lacustris_contig1060:36834..36935Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1060 36835..36935 -
1622815331.500777-CDS-P-lacustris_contig1060:37544..376201622815331.500777-CDS-P-lacustris_contig1060:37544..37620Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1060 37545..37620 -
1693493481.467794-CDS-P-lacustris_contig1060:37544..376201693493481.467794-CDS-P-lacustris_contig1060:37544..37620Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1060 37545..37620 -
1622815331.5155585-CDS-P-lacustris_contig1060:39109..391121622815331.5155585-CDS-P-lacustris_contig1060:39109..39112Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1060 39110..39112 -
1693493481.485526-CDS-P-lacustris_contig1060:39109..391121693493481.485526-CDS-P-lacustris_contig1060:39109..39112Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1060 39110..39112 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815331.5250723-UTR-P-lacustris_contig1060:39112..391701622815331.5250723-UTR-P-lacustris_contig1060:39112..39170Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1060 39113..39170 -
1693493481.4985678-UTR-P-lacustris_contig1060:39112..391701693493481.4985678-UTR-P-lacustris_contig1060:39112..39170Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1060 39113..39170 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-lacustris_contig1060.558.1

>prot_P-lacustris_contig1060.558.1 ID=prot_P-lacustris_contig1060.558.1|Name=mRNA_P-lacustris_contig1060.558.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=244bp
MAAPTALENRLVRARARYDDDDGPPAAVSFLLVVLGVAALCVAAVYLRAS
ALHEREIEISAYEEIVSAWTSFRPTFSRLSINVTAHFGVPPANTSLPGLD
PNPPPPGTLLALGVSKEADPIHDEEGDSGGLPNYVPFKLVRGVAPPPWRT
ARRYPPPDENSEEGSGDSSAADESEHGDGGGGDGGHDAGGAEGDPEGTPA
GAGGGGWRRWRRLNELGGSPREDAFLPPGGAAATAALPRPASPA
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mRNA from alignment at P-lacustris_contig1060:33174..39170-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-lacustris_contig1060.558.1 ID=mRNA_P-lacustris_contig1060.558.1|Name=mRNA_P-lacustris_contig1060.558.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=5997bp|location=Sequence derived from alignment at P-lacustris_contig1060:33174..39170- (Pleurocladia lacustris SAG_25_93)
CGGCACTCCCGCGCAGCAAGAGAGAGAACAGCGGGATCTGCCGCCGGCTA GCTGAGCTATGGTGAGAGCGTAGGCGTGTTTTCGCAAAATTGACTTGTAA TGTGATTGCAGCCTAAAAAATGATCGTGGCAACGGAGTTAACGCAACAAC GGACACCGCGCCGCAACGCGCATCGCCAAGAAGCACGCAGCGCTCAAGAT GGGGAGGCAGAGTCTCAAGCCTCGCTACTCGTCGGCCGAACTGCTTCGAT ACAGATTGCCAGGCACTGTACCGACTTGAATTTCGATACAGATTGCCAGG CACTGTTCCGACTTGTTCGGTTAATTGCTATGCAGTTCGTGCCGTATCTG TCTCTCGCCTGTCGGCTAAATGGCCATTTAGACTATGTGCATCCCATGTG GTTGTTCTTCATCGCCGGGCCTAGTGAGGACCTCCTTCGTATGCATATGA ACCCCGTTGGCGTCAGTCTGGGTCCTTCCCGCTAGTTGGTAGTTGGTTTA TAGGGCTACCTATTTAATCAAAGACCAAACCAAAGAGTAGTCAGCGCTGA CTCTTTTGTTAAATAGGTAGCCCTGTAGTCTAAACCAATTAAAAGAGCTG GCCCCGGGGCCACACCCCCAGAACACCTTTTCTCCGGGGAATAGCTTCCC CTTGCCATACGCTGCTACTTGATAGGGTTTTTACGTGTTTTCCGACTCAG ACATGCATGTCAATTTTCAATCTCCCAGTATTTTTTTGGGTAGAAAAAGA CGTATTCACAATGGGAGGGGCTTGTTGCACCGCCTGCTGTTGTGTTGTTT CCTCCCACCACTACCACCAGTAGTTGCTGCTCGCGACTACGACGCATTGT CGAGCACCACACCCACGTGGACACCACCAAGTAGATGGAACGATCCGTGG TGGATTACGTTTGTGTTGCTTCTCACGCGCGGTAATCTGCGCGGGGCGTA TGCGAGCTTCATAGCGGTCGCTTTCTGGATGGGAGAGAGAGTGGTGTCTG GCGCCGCCAAGACGCAAGGGAGGACGAAGAAGTGATTTTGTACTGCTGTA ACGCAAGCCCCAACTCCCCGCCCGAAATATGGCTGAGTGAAGAGCGTTGA GAAGGAGAGGGCCGGCGCAGCAGGCGGTGTCTGTCTCGAGTTAGAATAGG AGTAGCAGCAGGGGCTGAATACGAGGGGGCTCGGACTGACATTCGCCGAC AGGTCGTGGGTCGAGCCTCCGTTTGTCGTCTCTCGGCCCCCGTTTCGAGC ATGGACTATGTGATGTATTGTAGAGTCCTCTTCCTCACGGAGATAATGTG CTCGTCTTACCATTTCTACTTTATATTCGGGCGAGACCGGAGCATTTGCT TTTACATTCTTTTTCCGTGTGTCCTTGTGTTTGTTCTCCCTTGTGGTCCC CAACTGCAAAGGCGTTGCGTCTCGACGGGGATGTATGCGTGGTCCACGGC CAAATGTCTATTAAGTGCGCACTATTGTAAGTGAGTCCCCCTCCCCTCAC TTTCTCCCTGGACCCCATACCCCACTTGGGCAACCCCCCCGTAATACGAG GCGGCGCCGACGGCGTTGGAAAACAGGCTGGTCAGGGCGAGGGCACGATA CGACGACGACGATGGTCCTCCCGCTGGTGAGAGAGCGATTTCCTCTAGAC GCGCACCTGTTTAGCCGTAAAATGCCGCCAAAGATGACGATGAGCTTGGT AGCGGTAGTGGTTGCACGTTTGCTTTCACTCAAAGTACGGGCTAAGATTT GCGCGCACCCTGCATGTGTAGGGTTGCCTACATTGTGCCCCCCAAGTATC AGTGAGGTGAGACTGGTGACGTCCCGCTGTGTTTTTTCCTTTTTTTTTTT TTTTATTGTTTTTTTTCCGTACAATTTCGTTTTTTGCCGTCCCATGTGTT GCCGTTGCATGTGTCCTTTTGTTGTTGTGTTACACAATACTCGAAGTGTA GAGTTTAAAAGCCGAAGAAGTCCCCAAACATTTGCTCAAGAAGACGACGA GCTGTAGAGGCGAGCAAAGAGATGCCCCCAAAAAAAAAAATAGGGGAAAA GAAAAGATTTAGCGGCACGAGTACAAGCACACCCATCACCATCACGCCTC CTTAGATGAAGCCAGTGCTTTTTTTTCTCCCGGTACGCAATGGACAAGCT CTCTCTCTCTCTCTCTCTCTCTCGCGCGCGCGCTACGTCTCCTTTGGCTT ACCGTCGAAACCGTCCAATCCGCGAAAATTCAAAGCTGTATCGTTCCTGC TCGTGGTTCTCGGCGTTGCGGCCTTGTGCGTCGCGGCGGTGTACCTGAGG GCGTCCGCCCTTCACGAGAGAGAGATAGAGATATCGGTGAGCGTCTCGTC ATCGCTTGTTGTTGTTGTCGTTGTTGTTGTTGTTGTTGTACCTGTGTTCC ACGAAGCCTGTGTTCCACGAAGTCTAAGTCGAACGGAAAAAAACAAAACA AGCGACCTTTAACTTCACGAGGGGCGTGATCTTCGGTGCGTTGTCACAAC ACACTTTGACGCTCCCTTTGACGTGCCTAGTTTACTTCATTTTTCTCTTC TTCCTCACGAAGACTGACTGCTCCTATCAGAAAACGGCGGTGACCCCACC CCATCCTCTCGATTTCAATCAAAGCGATATAAAACGAACCCTGCCCACAA AAAAACATGAACCACCTGCAGGGGGCTTCTCAGATGTCAGTCTTCCTTTG ATGCTTGTGATTTTCCTTGAATGTCGCTTGCTTGTTCGGCTGATGTCAAC CAGACATAACGGAATCCTCGGACAGGTTGCCTCCCCCATAGCCCGACCTT CGCACACAGCTCGATCGCTCCTCAACGTAGAGGTTGCAAACACTGCATCC ACGGAAAAAATGATAGGGATATTGTAGATTCGTTTCCTTTTTGGCGAGGA GAAAAAAAGCGAAATCGACCACCGAGAAATCTGGAAGATATCATGATCTC ACCATGAGATCTTTCCTGATATGCATATAGTCACCATTTTTTTCATTCGA TTTTTTCGGGATCGACACCTTACCAAGTTTGTTGAGGAGCAAGACCGGCC TATGTAAGGGCGGGTGCGATCTCTCCAATGAGGACCCCCACGTTTTTTTT TGTGTCATGTCATGTCCGTGTCATATTTTATCATTTTACATGATACCCTG CCATCATCTACATCATGTCATGGCGTATCAGTCAAAGTAGCATATTCATT GTCGTGTATAGGGGGTGGTCGCCCTGCCCCGCAGGTCAGTTGGTTAACTG CAAACCTTCTGCCGGCTAGGTCGTGGGTTCGTTCTGTATTATTCAATGTT ATACTCTAGATAAAACAACGACAACTCACGCCGTCAATGTTTGTGCTTGT CTCGAATTTTGTGTTTTTTTTTTCGTGAATTTTGTGTTTTTTTGTGTTTT TTTCGTGTGTTCTTTCCTCTCGATTTTTTTTTTTTTTTTCCCGAAGGCTT ACGAAGAAATCGTCAGCGCGTGGACCTCTTTCCGCCCGACATTCTCGCGG CTCTCAATCAACGTCACCGCACACTTCGGGGTCCCTCCGGCGAACACTAG CCTGCCGGGGTTGGATCCAAATCCTCCCCCCCCGGGAACACTGCTAGCCT TGGGGGTCTCCAAAGAGGCAGATCCGATCCACGATGAGGAGGGAGATTCC GGTGGGCTTCCGAACTATGTGCCCTTCAAGCTTGGTGAGCTCTTTTTGGG TGGGGGATAGTGGGGACACGTCGTGGCTTGCTACCTTTCGTTGGAGGATT TGATTCGTGGGTTTTTCGACAGAACGTGTCGTGTATTGCGGGTCTCCCCC TCTCCTCCATCTCCCCCGAGGCGTTTTTTTTTTCAGCAAGGGATACTTGT TGGGTTAGGGTTAAACATGGAGTAAAGAATAAAGAATAAAGAACTGATCG CGGGGGAGGGGGAACTGATCGCAGGGGAGGGGGCTTTGCGTGCGAGAGAA GTCTCCGCCTCCCGGAGGGCGCTCGTTAATTGTTACTCAGTTGTGTGTGT GTGTGTGTGTGTTTGTGTTTTCTTTTTTTCTTTATCTTTCCTTTCGTTTC TTTCCTTAGGGCCCCCCGTATTAACGAAGTTTCCAAAATTAAATTGGGAG TTGAAATCGAGTTGTGATTGGCCCAGGAGCCCTCCAGGAGGCGTGAACGT TATGATCATGGAACCACACATTTTGATTTTAATTCTAAGAAAAACAGTCC CGAAAGAGTTTTTTTCTTGGAATTAAAATTAAAGTCAAACGCCTACCACT TGTGTGAAACCTGGGGACCCGGTCTCGACACCTCAAGCACTCTGCGGGCC CCCAGGAAGCCCAAAATCGCGAGAACCAGGCCCGACACGCCTCCTTATTT TAATTTTGATTTTAATTTTGGAAACTTCGTTAATACGGGCACTTACGAAA CAAATCAAATCCGTCTCTCTGTCTGTGGATACGGCGTCCAAGACAACTGA ATTTTTTTTTTTGTTCACCTGTTCGGCCGGATAGCAAATAGTCCGCGCGT CCATCCAAATCAGGCAGCAGCGTGTCGCTAATTTATAAACCATTGTGTAG TTTCGGCGGCGTCGTGTGTTTATCTGGGTTTATTTTTTATGGGGGCAAAA GAAGGTGAAACCACCCTTTGACGACTGCTGACTTGCCTCCCCGCCCTCGT GGCGGCGACTGCTCTCCTGCTACGATTGCCTGTCTCGTGTTTGCGCGTTT GCAGTGCTTCGCGGGCTGTGTAGCAGGGTCCGTCGTGATGGCTAGGGACA GACAGACGGGGCTCTGTGTAAGGCATTGCCTGGTACCCCAGTCGTTGGCG ACGCCAAGGCGTTGTAGAGACTTTTTTTTGTTTTCGCTTTGTGGAGCAGC AGGCCCCGAATTTTGAACGCATTTATTGTCCGGCGCCCCCGGCAGGCGCC GCCGCTTTCTTCCTCGCGCGCCGCACCGTGGCTGGACGATGTCCGGGTAT ACTCCCTTCGCAACTGTCGCAAACATGCCACACGCCACTGGCTGGCCTAC ACAGCAGTTGTCGTCCATTTTTTTTTTTTTTTTTTGCTCTTTCTTTTCGT CCCATCTATTCTGTATTCTGGGCGCTATGCCGTTTTTACACCTTTGGGTG ATTGTAGGGTTAGGAACCAGCCGGGGTCACACAGAAGGATTCGTCTCTCT GAGGCCCCCGCCCGCCCTCCTGCGGTACGTGCCTTAATATTTATCGCGAT GGTTCAGCTGTCCCTTTCCCTCGTCGAAATTAGTCGAATTTTGGATATTA TATATACGAATTAATCACTTTCCACTGTAAAGTTGCAAGAAAAAACACCC GCAGTGGGAATTGAACTCCAGACTTGCCGCTAAGTTGGTAACCACTAGAC CACCGGGGCAGGGTATACTGCAACTGATAAAACGCCTCAAAATTTGTTTA CTCATCCAGCCTCCCAACTTTTGGAAAGCGCCAAGCATGCGAAATCCCCT ACCTCCTATATACTCGGAGTACGTCTAAAAATATATTTCCCCAAGATCAA ACAAAGATACATGGTTGCTTCGTTGTTCTGCCTTGCTCCCTCTACCTCCA CCCACCCTCCAAGAAAATAAATAAATAATGATAATGTCACCAACCTGCTC GAAAACTTTTTTCAAGTGTCGCCGCCGATATCCTGCCGCGTGCGTTTACG TGTGTGCACGCATGCGTCCTGGGCCCCGTGCAGTTAGGGGCGTGGCCCCA CCTCCGTGGCGGACCGCCCGCCGTTACCCCCCCCCAGACGAAAATTCCGA AGAAGGTTCCGGGGACAGTTCAGCGGCTGACGAAAGCGAGCACGGCGACG GAGGCGGCGGTGACGGGGGGCATGATGCAGGCGGGGCGGAGGGAGACCCA GAAGGCACTCCAGCCGGCGCCGGGGGTGGCGGGTGGCGGCGGTGGCGGAG ACTAAACGAACTCGGTGGCAGCCCACGGGAAGATGCTTTCCTTCCACCGG GTGGTGCGGCGGCAACGGCGGCGCTTCCGCGACCGGCTTCGCCAGCG
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Coding sequence (CDS) from alignment at P-lacustris_contig1060:33174..39170-

>mRNA_P-lacustris_contig1060.558.1 ID=mRNA_P-lacustris_contig1060.558.1|Name=mRNA_P-lacustris_contig1060.558.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=1464bp|location=Sequence derived from alignment at P-lacustris_contig1060:33174..39170- (Pleurocladia lacustris SAG_25_93)
ATGATGGCGGCGCCGACGGCGTTGGAAAACAGGCTGGTCAGGGCGAGGGC
ACGATACGACGACGACGATGGTCCTCCCGCTGGCGGCGCCGACGGCGTTG
GAAAACAGGCTGGTCAGGGCGAGGGCACGATACGACGACGACGATGGTCC
TCCCGCTGCTGTATCGTTCCTGCTCGTGGTTCTCGGCGTTGCGGCCTTGT
GCGTCGCGGCGGTGTACCTGAGGGCGTCCGCCCTTCACGAGAGAGAGATA
GAGATATCGCTGTATCGTTCCTGCTCGTGGTTCTCGGCGTTGCGGCCTTG
TGCGTCGCGGCGGTGTACCTGAGGGCGTCCGCCCTTCACGAGAGAGAGAT
AGAGATATCGGCTTACGAAGAAATCGTCAGCGCGTGGACCTCTTTCCGCC
CGACATTCTCGCGGCTCTCAATCAACGTCACCGCACACTTCGGGGTCCCT
CCGGCGAACACTAGCCTGCCGGGGTTGGATCCAAATCCTCCCCCCCCGGG
AACACTGCTAGCCTTGGGGGTCTCCAAAGAGGCAGATCCGATCCACGATG
AGGAGGGAGATTCCGGTGGGCTTCCGAACTATGTGCCCTTCAAGCTTGGC
TTACGAAGAAATCGTCAGCGCGTGGACCTCTTTCCGCCCGACATTCTCGC
GGCTCTCAATCAACGTCACCGCACACTTCGGGGTCCCTCCGGCGAACACT
AGCCTGCCGGGGTTGGATCCAAATCCTCCCCCCCCGGGAACACTGCTAGC
CTTGGGGGTCTCCAAAGAGGCAGATCCGATCCACGATGAGGAGGGAGATT
CCGGTGGGCTTCCGAACTATGTGCCCTTCAAGCTTGTTAGGGGCGTGGCC
CCACCTCCGTGGCGGACCGCCCGCCGTTACCCCCCCCCAGACGAAAATTC
CGAAGAAGGTTCCGGGGACAGTTCAGCGGCTGACGAAAGCGAGCACGGCG
ACGGAGGCGGCGGTGACGGGGGGCATGATGCAGGCGGGGCGGAGGGAGAC
CCAGAAGGCACTCCAGCCGGCGCCGGGGGTGGCGGGTGGCGGCGGTGGCG
GAGACTAAACGAACTCGGTGGCAGCCCACGGGAAGATGCTTTCCTTCCAC
CGGGTGGTGCGGCGGCAACGGCGGCGCTTCCGCGACCGGCTTCGCCAGCG
TTAGGGGCGTGGCCCCACCTCCGTGGCGGACCGCCCGCCGTTACCCCCCC
CCAGACGAAAATTCCGAAGAAGGTTCCGGGGACAGTTCAGCGGCTGACGA
AAGCGAGCACGGCGACGGAGGCGGCGGTGACGGGGGGCATGATGCAGGCG
GGGCGGAGGGAGACCCAGAAGGCACTCCAGCCGGCGCCGGGGGTGGCGGG
TGGCGGCGGTGGCGGAGACTAAACGAACTCGGTGGCAGCCCACGGGAAGA
TGCTTTCCTTCCACCGGGTGGTGCGGCGGCAACGGCGGCGCTTCCGCGAC
CGGCTTCGCCAGCG
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