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Homology
BLAST of mRNA_P-lacustris_contig1055.514.1 vs. uniprot
Match: A0A6H5LDR5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LDR5_9PHAE) HSP 1 Score: 193 bits (491), Expect = 3.570e-47 Identity = 135/205 (65.85%), Postives = 147/205 (71.71%), Query Frame = 0
Query: 278 GSGGAFLGSSLWAESDLEWRDAPRAGSDALYELNMQLAAYAKDAQWEMAIMLLRQARALSMKRSSSGSSEGEKEERGDPSARDGRNTQEXXXXXXXXXQSGRRTNGVNPSNDVSPSVSSSSSFSFSAEEEWPVAVPVVVPNVVSYNNVITACANAKKQKRAEGVFREMTKERGIRPNXXXXXXXXXXXAKRGNWEDSVNYLEHMR 482
G AF G SLWA+SD EWRDAPRA SDAL+ELNMQLAAYAKDAQWEMAIMLLRQAR LS + S XXXXXXX + +R GV+P + + SVS + + EEEW +AVP V PNVVSYNNVITACANAKKQKRAEG+FREMTKERGIR XXXXXXXXXXXAKRGNWEDSVNYLE MR
Sbjct: 155 GGAAAFTGPSLWADSDPEWRDAPRADSDALFELNMQLAAYAKDAQWEMAIMLLRQARVLSRR----SSXXXXXXXXXXXXXXXXXXXXXXXXXXXXGNDAAKRRYGVHPGGNDNLSVSVPYTSAAEKEEEWRLAVPAVEPNVVSYNNVITACANAKKQKRAEGIFREMTKERGIRXXXXXXXXXXXXXAKRGNWEDSVNYLEQMR 355
BLAST of mRNA_P-lacustris_contig1055.514.1 vs. uniprot
Match: D7FHW4_ECTSI (PPR_long domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHW4_ECTSI) HSP 1 Score: 186 bits (471), Expect = 1.640e-45 Identity = 99/140 (70.71%), Postives = 103/140 (73.57%), Query Frame = 0
Query: 851 VDADKIEEAIQLFNKLQARRSCSVNIHSYTPLVEALTRELRWQEAIMLFQEMEDRKITPTVQCYXXXXXXXXXXXXXXXXXXXLDEMRKKRMRFYDIGILDELFKRLLAGLSLLRGRAPPRGGATGSADPRRAGSRTTVG 990
VDAD+IEEAIQLFNKLQARR+CSV IHSYTPLV+ALTRELRWQEAIMLFQEMEDRKI PTVQCY LD+MRKKRMRFYDIGILDELFKRLLAGLSLLRGR P G PR SR G
Sbjct: 516 VDADQIEEAIQLFNKLQARRNCSVTIHSYTPLVDALTRELRWQEAIMLFQEMEDRKIMPTVQCYTSVVRACERSGQYDVALRLLDDMRKKRMRFYDIGILDELFKRLLAGLSLLRGRGGPGGAKGRGGAPRIGSSRAPAG 655
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| IPR011990 | Tetratricopeptide-like helical domain superfamily | GENE3D | 1.25.40.10 | | coord: 530..691
e-value: 1.6E-43
score: 151.2 |
| IPR011990 | Tetratricopeptide-like helical domain superfamily | GENE3D | 1.25.40.10 | | coord: 412..521
e-value: 4.2E-32
score: 113.9 |
| IPR011990 | Tetratricopeptide-like helical domain superfamily | GENE3D | 1.25.40.10 | | coord: 855..955
e-value: 1.6E-21
score: 78.5
coord: 765..854
e-value: 7.0E-22
score: 79.6 |
| IPR011990 | Tetratricopeptide-like helical domain superfamily | GENE3D | 1.25.40.10 | | coord: 692..764
e-value: 1.9E-19
score: 71.9 |
| IPR002885 | Pentatricopeptide repeat | PFAM | PF13041 | PPR_2 | coord: 875..921
e-value: 9.0E-8
score: 32.2
coord: 523..567
e-value: 3.1E-10
score: 40.1 |
| IPR002885 | Pentatricopeptide repeat | PFAM | PF13812 | PPR_3 | coord: 581..642
e-value: 4.7E-4
score: 20.2
coord: 417..468
e-value: 2.2E-13
score: 50.1
coord: 651..711
e-value: 2.7E-11
score: 43.4 |
| IPR002885 | Pentatricopeptide repeat | PFAM | PF01535 | PPR | coord: 491..521
e-value: 3.6E-4
score: 20.6 |
| IPR002885 | Pentatricopeptide repeat | TIGRFAM | TIGR00756 | TIGR00756 | coord: 526..558
e-value: 9.8E-10
score: 36.0
coord: 736..769
e-value: 3.4E-8
score: 31.2
coord: 666..700
e-value: 1.4E-4
score: 19.8
coord: 631..665
e-value: 1.7E-5
score: 22.7
coord: 913..941
e-value: 3.0E-4
score: 18.8
coord: 702..735
e-value: 4.3E-6
score: 24.6
coord: 491..523
e-value: 6.7E-5
score: 20.8
coord: 456..490
e-value: 3.6E-7
score: 28.0
coord: 877..910
e-value: 3.4E-5
score: 21.7
coord: 420..455
e-value: 5.8E-5
score: 21.0
coord: 807..840
e-value: 4.2E-5
score: 21.4
coord: 842..875
e-value: 3.1E-4
score: 18.7 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 454..488
score: 12.584 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 875..909
score: 10.819 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 306..340
score: 5.612 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 839..873
score: 8.67 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 664..698
score: 10.972 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 699..733
score: 11.564 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 769..803
score: 9.986 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 559..593
score: 7.717 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 910..944
score: 9.799 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 629..663
score: 11.772 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 804..838
score: 10.687 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 418..453
score: 10.161 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 524..558
score: 12.474 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 489..523
score: 11.411 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 734..768
score: 12.375 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 594..628
score: 8.835 |
| IPR033443 | Pentacotripeptide-repeat region of PRORP | PFAM | PF17177 | PPR_long | coord: 713..846
e-value: 1.3E-13
score: 50.8 |
| None | No IPR available | PANTHER | PTHR46128 | FAMILY NOT NAMED | coord: 744..943
coord: 520..639
coord: 626..767
coord: 418..529 |
| None | No IPR available | PHOBIUS | CYTOPLASMIC_DOMAIN | Cytoplasmic domain | coord: 1..20 |
| None | No IPR available | PHOBIUS | NON_CYTOPLASMIC_DOMAIN | Non cytoplasmic domain | coord: 41..1019 |
| None | No IPR available | PHOBIUS | TRANSMEMBRANE | Transmembrane region | coord: 21..40 |
| None | No IPR available | TMHMM | TMhelix | | coord: 21..43 |
Alignments
The following features are aligned
Analyses
This polypeptide is derived from or has results from the following analyses
Relationships
This polypeptide derives from the following mRNA feature(s):
Sequences
The following sequences are available for this feature:
polypeptide sequence >prot_P-lacustris_contig1055.514.1 ID=prot_P-lacustris_contig1055.514.1|Name=mRNA_P-lacustris_contig1055.514.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=1020bp
MQRMGRRQTRYRGAAFSMTRVLGAMAAGGLDTSLTAVVLVTHTAGTAVTT
TAFGSAAAACRVVGSCRRSPRERRLRSLARPEGEGRAGGGTRRLKSPLAM
RQTLSGVQVAWPRRRYNSMNSGTCCRGSARSRSRGGNTIGCRKRTLATQT
SWPRTPSADGLVLLCAAPSASVDDSDTTTTVGRSFSAASASVPTMLIAPT
TATLSTGAKQRTEKTTQWQRALDQEPKVDTNIVKLGHDTQQYAAAAAGRR
AGAGARGEVEQQAERDEGDEERVIESGGSGGAFLGSSLWAESDLEWRDAP
RAGSDALYELNMQLAAYAKDAQWEMAIMLLRQARALSMKRSSSGSSEGEK
EERGDPSARDGRNTQEEEEEEEEESQSGRRTNGVNPSNDVSPSVSSSSSF
SFSAEEEWPVAVPVVVPNVVSYNNVITACANAKKQKRAEGVFREMTKERG
IRPNVFTYGALISACAKRGNWEDSVNYLEHMRQSGLAPNAVIYSTVISAC
ERSDQWQKAVRLLRTMRNDGILPVTVTYNTVISACGKSGQWSLAVSLLDE
MSDLGCPPGPVTFASAMLACERARQWPHVLRIMDQMQEDGVWVDKYAYTT
AIHAAGQLGKWARCVRYLDEMDANGVPKDVVTVSAAISACADKGQWEQAE
KLLEDMLDAGLTPNVVTYTSLMVVLRRGGQHEKSIKILDVMKSKGVMPNV
RTYSVAIAACADAKEWRRALALMKEMEREGVPPNEVSYNTAIRACGDAGQ
LSEALDLMDEMERKGIKRSVVTYGTAVSACQRKADWKMALELLAAMRREQ
IKPNEIVYGGIIKACCADGQADKAHEVLSRMIDLRLRPNTQCFNVVIKAF
VDADKIEEAIQLFNKLQARRSCSVNIHSYTPLVEALTRELRWQEAIMLFQ
EMEDRKITPTVQCYTSVVRACERSGQYNVALRLLDEMRKKRMRFYDIGIL
DELFKRLLAGLSLLRGRAPPRGGATGSADPRRAGSRTTVGPGPQPPPSSP
RTRSHDPDDPDGNGRERDA* back to top
Annotated Terms
The following terms have been associated with this polypeptide:
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